Clone BO15660 Report

Search the DGRC for BO15660

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:156
Well:60
Vector:pDNR-Dual
Associated Gene/TranscriptCG12207-RA
Protein status:BO15660.pep: full length peptide match
Sequenced Size:1063

Clone Sequence Records

BO15660.complete Sequence

1063 bp (1063 high quality bases) assembled on 2006-08-24

GenBank Submission: FJ633537

> BO15660.complete
GAAGTTATCAGTCGACATGGATGACTCGGAATTCATGTTCAACGAGAAGC
AATCGATCCGGGACTCCGGGCGCACCCTCAAGCGCTACGGGAGCACCTGC
TGCAACAGCCTCCGGAACAATGAGACCCTCATCCGGCACATCGTCGAGAA
GACGGACACGCTGCAGGGCATCGCCCTCAAGTACGGCTGCACGACGGAGC
AAATAAGACGGGCCAACCGCCTCTTCGCCTCGGACAGCCTGTTCCTGCGT
CAGTTTCTCCTCGTTCCAGTGGAGAAGAACTCACCGTACTATCCCCAGGT
GCCTGGCGATTCGATAGCCGCTTTCGACGCCGTGCTGGCCACGCCACCGG
GCACTCCGGATGCCAATGGACAGCGGGAGGCGCACAACAATGCCAATAAT
CTGAGCCAGAGCAACAAGAGCTTCATGAAGAGCAACGACATCAGCAGCAG
CAGTAGCAGCAGCAGCAGTGGGAGCAGCAGCAGCTGCAACACAAGTGGCA
CCGGCCCCATTTCCGGAGGATCGCGTTCCGGCGGCAACCAACAGCAGCAG
CAGCAACAGCCCCCACAACGTCCCTACTCCATTGCCGGGGAGCTGCTGGT
GGTGCAGGCCGGCGACGAGGATCCATCGATGATGCACGGCCACGGTGGTT
GCAGCGGCAAGCAGAGCAAGAGCCTGGACTCGGTGGCCGCAATGACGCCC
GAGGAGGAGAACAGGAAATGCATGAACGACTTCCTTAACAAGATAGACAA
CACCATTTCTGAGTCGCGCAAATATGTGGAGCGCTCTAAGGACCTGGTCA
GCAGTCAGAGTGATGCGGACATCTGCATCAGTGCCACCGCCGACGTTTTC
CCGCAGCGCCGCCATCCGCTGAACAACTCCTACAAGACCAACAACAACGA
CCGTCCGTCACAGTATCAGCGCCACAGCTCGACGGGCAGCGGGAACTCCT
CGGATACGGCGCACCTGCTGAACACGACGCAGACGCGACGAGTCCAGAAT
TCGCTGAAGCGGCTGGAGAAGCAGCAGGACGACTTCTTTGAGTTGGCAAG
CTTTCTAGACCAT

BO15660.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:32:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG12207-RG 1101 CG12207-PG 66..1098 13..1045 5150 99.9 Plus
CG12207-RF 1101 CG12207-PF 66..1098 13..1045 5150 99.9 Plus
CG12207-RC 1101 CG12207-PC 66..1098 13..1045 5150 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:32:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG12207-RG 2535 CG12207-RG 707..1739 13..1045 5150 99.9 Plus
CG12207-RF 2113 CG12207-RF 285..1317 13..1045 5150 99.9 Plus
CG12207-RE 1927 CG12207-RE 99..1131 13..1045 5150 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:32:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14300419..14301018 193..792 3000 100 Plus
3R 32079331 3R 14301228..14301480 793..1045 1250 99.6 Plus
3R 32079331 3R 14298807..14298987 13..193 905 100 Plus
Blast to na_te.dros performed 2014-11-27 01:32:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6741..6899 404..569 319 68.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6721..6893 406..569 275 66.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6796..6956 384..551 220 61.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2300..2449 426..581 216 63.7 Plus
roo 9092 roo DM_ROO 9092bp 1062..1157 473..572 165 67 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6719..6824 454..569 161 64.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6414..6563 419..569 149 58.2 Plus
gypsy11 4428 gypsy11 GYPSY11 4428bp 849..1005 403..569 146 58.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2450..2661 370..572 138 56.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2394 474..569 130 64.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..6779 529..569 120 79.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6758..6800 529..569 120 79.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2334..2376 532..572 111 76.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6726..6758 537..569 111 81.8 Plus

BO15660.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:52:58 Download gff for BO15660.complete
Subject Subject Range Query Range Percent Splice Strand
CG12207-RC 62..1101 8..1046 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:08:54 Download gff for BO15660.complete
Subject Subject Range Query Range Percent Splice Strand
CG12207-RA 321..1361 8..1051 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:56:27 Download gff for BO15660.complete
Subject Subject Range Query Range Percent Splice Strand
CG12207-RD 234..1262 17..1047 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:52:58 Download gff for BO15660.complete
Subject Subject Range Query Range Percent Splice Strand
CG12207-RA 321..1361 8..1051 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:27:32 Download gff for BO15660.complete
Subject Subject Range Query Range Percent Splice Strand
CG12207-RE 103..1131 17..1047 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:27:32 Download gff for BO15660.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14301228..14301480 793..1047 98   Plus
3R 14298811..14298987 17..193 100 -> Plus
3R 14300420..14301018 194..792 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:56:27 Download gff for BO15660.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10126950..10127202 793..1047 98   Plus
arm_3R 10124533..10124709 17..193 100 -> Plus
arm_3R 10126142..10126740 194..792 100 -> Plus

BO15660.pep Sequence

Translation from 16 to 1063

> BO15660.pep
MDDSEFMFNEKQSIRDSGRTLKRYGSTCCNSLRNNETLIRHIVEKTDTLQ
GIALKYGCTTEQIRRANRLFASDSLFLRQFLLVPVEKNSPYYPQVPGDSI
AAFDAVLATPPGTPDANGQREAHNNANNLSQSNKSFMKSNDISSSSSSSS
SGSSSSCNTSGTGPISGGSRSGGNQQQQQQQPPQRPYSIAGELLVVQAGD
EDPSMMHGHGGCSGKQSKSLDSVAAMTPEEENRKCMNDFLNKIDNTISES
RKYVERSKDLVSSQSDADICISATADVFPQRRHPLNNSYKTNNNDRPSQY
QRHSSTGSGNSSDTAHLLNTTQTRRVQNSLKRLEKQQDDFFELASFLDH

BO15660.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:34:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG12207-PE 343 CG12207-PE 1..343 1..343 1777 100 Plus
CG12207-PD 343 CG12207-PD 1..343 1..343 1777 100 Plus
CG12207-PA 343 CG12207-PA 1..343 1..343 1777 100 Plus
CG12207-PG 366 CG12207-PG 24..366 1..343 1777 100 Plus
CG12207-PF 366 CG12207-PF 24..366 1..343 1777 100 Plus