Clone Sequence Records
BO15661.3prime Sequence
641 bp (641 high quality bases) assembled on 2006-06-02
> BO15661.3prime
ATGGTCTAGAAAGCTTGCAACATCCGAGAATTCTGCCATCTTTTCAAGTA
TCCAGGGCATATAGGTGGGTACATCCATGTAGTAGGCTGTGTGACCAGCA
CCGCAGTTTTGGCTTCCAGTGCTGACCACACCAAATTGTACGGCTCGATC
CTTGCCAAACAACGTGGTCTTCCATAAGAGCGGTCCACCGGAGTCCCCAT
TGCATGTGTCCACATAATCTCCACTGGCGCAGAGGAACGAAGTATCCCTG
CCGTCGGTGCACTTCTCAGTTCTTATATCCACCTCCATTGTACTGTTGGC
ATAGCGTAGACTCTCCGTTTTTCCCCAGCCCACCGCCATGAAGCGTTGTC
CCAGCTGCAAGGTAAACGCCAAGAGTTCGTCGGTCAGGGGCAGGCATATG
GGTCGTATGTGATCTTTAAAGACCACTTTCTTGTTTAGTTTTATCAGGGC
AATATCATACCCGGGATAAAAGAGGTTAAACTCCTCGTGAAGAATCCACT
TGTCGATGGTAAACTCCTCCACGGGCGGAGCGCAAACCCGTTCATAATTG
TAGGTGGTGCAGTCACTTGTGGAACTAAGGTCGAGCTCTCCCAGCCACAC
TCTAATCTCCTTAGATCGGGGACACATGTCGACTGATAACT
BO15661.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:39:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30002-PA | 612 | CG30002-RA | 1..609 | 627..19 | 2995 | 99.6 | Minus |
CG1773-PA | 954 | CG1773-RA | 325..629 | 627..323 | 1100 | 94.4 | Minus |
CG1773-PA | 954 | CG1773-RA | 652..860 | 300..92 | 745 | 94.2 | Minus |
CG1773-PA | 954 | CG1773-RA | 865..905 | 87..47 | 180 | 97.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:29:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30002-RB | 1572 | CG30002-RB | 348..956 | 627..19 | 3015 | 99.7 | Minus |
CG1773-RA | 1123 | CG1773-RA | 350..955 | 627..22 | 2370 | 92.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:29:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9705135..9705531 | 415..19 | 1955 | 99.5 | Minus |
2R | 25286936 | 2R | 9707019..9707412 | 415..22 | 1445 | 91.1 | Minus |
2R | 25286936 | 2R | 9704871..9705064 | 607..414 | 970 | 100 | Minus |
2R | 25286936 | 2R | 9706755..9706948 | 607..414 | 835 | 95.4 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:29:48 has no hits.
BO15661.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:52:33 Download gff for
BO15661.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30002-PA | 1..612 | 15..627 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:57:07 Download gff for
BO15661.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30002-PA | 1..612 | 15..627 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:11:57 Download gff for
BO15661.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30002-RB | 343..960 | 14..632 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:06:06 Download gff for
BO15661.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30002-RB | 343..960 | 14..632 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:06:06 Download gff for
BO15661.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9704782..9704806 | 608..632 | 92 | -> | Minus |
2R | 9704871..9705064 | 414..607 | 100 | -> | Minus |
2R | 9705137..9705535 | 14..413 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:11:57 Download gff for
BO15661.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5592287..5592311 | 608..632 | 92 | -> | Minus |
arm_2R | 5592376..5592569 | 414..607 | 100 | -> | Minus |
arm_2R | 5592642..5593040 | 14..413 | 99 | | Minus |
BO15661.5prime Sequence
641 bp (641 high quality bases) assembled on 2006-05-30
> BO15661.5prime
GAAGTTATCAGTCGACATGTGTCCCCGATCTAAGGAGATTAGAGTGTGGC
TGGGAGAGCTCGACCTTAGTTCCACAAGTGACTGCACCACCTACAATTAT
GAACGGGTTTGCGCTCCGCCCGTGGAGGAGTTTACCATCGACAAGTGGAT
TCTTCACGAGGAGTTTAACCTCTTTTATCCCGGGTATGATATTGCCCTGA
TAAAACTAAACAAGAAAGTGGTCTTTAAAGATCACATACGACCCATATGC
CTGCCCCTGACCGACGAACTCTTGGCGTTTACCTTGCAGCTGGGACAACG
CTTCATGGCGGTGGGCTGGGGAAAAACGGAGAGTCTACGCTATGCCAACA
GTACAATGGAGGTGGATATAAGAACTGAGAAGTGCACCGACGGCAGGGAT
ACTTCGTTCCTCTGCGCCAGTGGAGATTATGTGGACACATGCAATGGGGA
CTCCGGTGGACCGCTCTTATGGAAGACCACGTTGTTTGGCAAGGATCGAG
CCGTACAATTTGGTGTGGTCAGCACTGGAAGCCAAAACTGCGGTGCTGGT
CACAAGGCCTACTACATGGATGTACCCACCTATATGCCCTGGATACTTGA
AAAGATGGCAGAATTCTCGGATGTTGCAAGCTTTCTAGACC
BO15661.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:39:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30002-PA | 612 | CG30002-RA | 1..609 | 17..625 | 3045 | 100 | Plus |
CG1773-PA | 954 | CG1773-RA | 325..629 | 17..321 | 1100 | 94.4 | Plus |
CG1773-PA | 954 | CG1773-RA | 652..905 | 344..597 | 920 | 94.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:10:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30002-RB | 1572 | CG30002-RB | 348..956 | 17..625 | 3045 | 100 | Plus |
CG1773-RA | 1123 | CG1773-RA | 350..955 | 17..622 | 2400 | 93.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:10:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9705135..9705531 | 229..625 | 1985 | 100 | Plus |
2R | 25286936 | 2R | 9707019..9707412 | 229..622 | 1475 | 91.6 | Plus |
2R | 25286936 | 2R | 9704871..9705064 | 37..230 | 970 | 100 | Plus |
2R | 25286936 | 2R | 9706755..9706948 | 37..230 | 835 | 95.4 | Plus |
Blast to na_te.dros performed on 2015-02-11 13:10:30 has no hits.
BO15661.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:52:33 Download gff for
BO15661.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30002-PA | 1..612 | 17..629 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:57:09 Download gff for
BO15661.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30002-PA | 1..612 | 17..629 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:07:36 Download gff for
BO15661.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30002-RB | 343..960 | 12..630 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:44:06 Download gff for
BO15661.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30002-RB | 343..960 | 12..630 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:44:06 Download gff for
BO15661.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9704871..9705064 | 37..230 | 100 | -> | Plus |
2R | 9704782..9704806 | 12..36 | 92 | -> | Plus |
2R | 9705137..9705535 | 231..630 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:07:36 Download gff for
BO15661.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5592287..5592311 | 12..36 | 92 | -> | Plus |
arm_2R | 5592376..5592569 | 37..230 | 100 | -> | Plus |
arm_2R | 5592642..5593040 | 231..630 | 99 | | Plus |
BO15661.complete Sequence
643 bp (643 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633538
> BO15661.complete
GAAGTTATCAGTCGACATGTGTCCCCGATCTAAGGAGATTAGAGTGTGGC
TGGGAGAGCTCGACCTTAGTTCCACAAGTGACTGCACCACCTACAATTAT
GAACGGGTTTGCGCTCCGCCCGTGGAGGAGTTTACCATCGACAAGTGGAT
TCTTCACGAGGAGTTTAACCTCTTTTATCCCGGGTATGATATTGCCCTGA
TAAAACTAAACAAGAAAGTGGTCTTTAAAGATCACATACGACCCATATGC
CTGCCCCTGACCGACGAACTCTTGGCGTTTACCTTGCAGCTGGGACAACG
CTTCATGGCGGTGGGCTGGGGAAAAACGGAGAGTCTACGCTATGCCAACA
GTACAATGGAGGTGGATATAAGAACTGAGAAGTGCACCGACGGCAGGGAT
ACTTCGTTCCTCTGCGCCAGTGGAGATTATGTGGACACATGCAATGGGGA
CTCCGGTGGACCGCTCTTATGGAAGACCACGTTGTTTGGCAAGGATCGAG
CCGTACAATTTGGTGTGGTCAGCACTGGAAGCCAAAACTGCGGTGCTGGT
CACAAGGCCTACTACATGGATGTACCCACCTATATGCCCTGGATACTTGA
AAAGATGGCAGAATTCTCGGATGTTGCAAGCTTTCTAGACCAT
BO15661.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:15:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30002-RB | 936 | CG30002-PB | 325..933 | 17..625 | 3045 | 100 | Plus |
CG1773-RA | 954 | CG1773-PA | 325..930 | 17..622 | 2400 | 93.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:15:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30002-RB | 1572 | CG30002-RB | 348..956 | 17..625 | 3045 | 100 | Plus |
CG1773-RA | 1123 | CG1773-RA | 350..955 | 17..622 | 2400 | 93.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:15:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9705135..9705531 | 229..625 | 1985 | 100 | Plus |
2R | 25286936 | 2R | 9707019..9707412 | 229..622 | 1475 | 91.6 | Plus |
2R | 25286936 | 2R | 9704871..9705064 | 37..230 | 970 | 100 | Plus |
2R | 25286936 | 2R | 9706755..9706948 | 37..230 | 835 | 95.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:15:29 has no hits.
BO15661.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:59:50 Download gff for
BO15661.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30002-RA | 1..612 | 17..629 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:31:52 Download gff for
BO15661.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30002-RA | 400..1017 | 12..630 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:38:59 Download gff for
BO15661.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30002-RB | 348..956 | 17..627 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:59:50 Download gff for
BO15661.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30002-RA | 400..1017 | 12..630 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:27 Download gff for
BO15661.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30002-RB | 348..956 | 17..627 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:03:27 Download gff for
BO15661.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9704787..9704806 | 17..36 | 100 | -> | Plus |
2R | 9704871..9705064 | 37..230 | 100 | -> | Plus |
2R | 9705137..9705531 | 231..627 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:38:59 Download gff for
BO15661.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5592292..5592311 | 17..36 | 100 | -> | Plus |
arm_2R | 5592376..5592569 | 37..230 | 100 | -> | Plus |
arm_2R | 5592642..5593036 | 231..627 | 99 | | Plus |
BO15661.pep Sequence
Translation from 16 to 643
> BO15661.pep
MCPRSKEIRVWLGELDLSSTSDCTTYNYERVCAPPVEEFTIDKWILHEEF
NLFYPGYDIALIKLNKKVVFKDHIRPICLPLTDELLAFTLQLGQRFMAVG
WGKTESLRYANSTMEVDIRTEKCTDGRDTSFLCASGDYVDTCNGDSGGPL
LWKTTLFGKDRAVQFGVVSTGSQNCGAGHKAYYMDVPTYMPWILEKMAEF
SDVASFLDH
BO15661.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:48:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30002-PB | 311 | CG30002-PB | 109..311 | 1..203 | 1105 | 100 | Plus |
CG1773-PA | 317 | CG1773-PA | 109..310 | 1..202 | 1000 | 90.1 | Plus |
grass-PA | 335 | CG5896-PA | 132..331 | 7..198 | 307 | 37.4 | Plus |
grass-PB | 377 | CG5896-PB | 174..373 | 7..198 | 307 | 37.4 | Plus |
CG5909-PA | 381 | CG5909-PA | 183..380 | 8..197 | 286 | 34.5 | Plus |