Clone BO15661 Report

Search the DGRC for BO15661

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:156
Well:61
Vector:pDNR-Dual
Associated Gene/TranscriptCG30002-RA
Protein status:BO15661.pep: validated full length
Sequenced Size:643

Clone Sequence Records

BO15661.3prime Sequence

641 bp (641 high quality bases) assembled on 2006-06-02

> BO15661.3prime
ATGGTCTAGAAAGCTTGCAACATCCGAGAATTCTGCCATCTTTTCAAGTA
TCCAGGGCATATAGGTGGGTACATCCATGTAGTAGGCTGTGTGACCAGCA
CCGCAGTTTTGGCTTCCAGTGCTGACCACACCAAATTGTACGGCTCGATC
CTTGCCAAACAACGTGGTCTTCCATAAGAGCGGTCCACCGGAGTCCCCAT
TGCATGTGTCCACATAATCTCCACTGGCGCAGAGGAACGAAGTATCCCTG
CCGTCGGTGCACTTCTCAGTTCTTATATCCACCTCCATTGTACTGTTGGC
ATAGCGTAGACTCTCCGTTTTTCCCCAGCCCACCGCCATGAAGCGTTGTC
CCAGCTGCAAGGTAAACGCCAAGAGTTCGTCGGTCAGGGGCAGGCATATG
GGTCGTATGTGATCTTTAAAGACCACTTTCTTGTTTAGTTTTATCAGGGC
AATATCATACCCGGGATAAAAGAGGTTAAACTCCTCGTGAAGAATCCACT
TGTCGATGGTAAACTCCTCCACGGGCGGAGCGCAAACCCGTTCATAATTG
TAGGTGGTGCAGTCACTTGTGGAACTAAGGTCGAGCTCTCCCAGCCACAC
TCTAATCTCCTTAGATCGGGGACACATGTCGACTGATAACT

BO15661.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:39:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG30002-PA 612 CG30002-RA 1..609 627..19 2995 99.6 Minus
CG1773-PA 954 CG1773-RA 325..629 627..323 1100 94.4 Minus
CG1773-PA 954 CG1773-RA 652..860 300..92 745 94.2 Minus
CG1773-PA 954 CG1773-RA 865..905 87..47 180 97.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:29:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG30002-RB 1572 CG30002-RB 348..956 627..19 3015 99.7 Minus
CG1773-RA 1123 CG1773-RA 350..955 627..22 2370 92.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:29:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9705135..9705531 415..19 1955 99.5 Minus
2R 25286936 2R 9707019..9707412 415..22 1445 91.1 Minus
2R 25286936 2R 9704871..9705064 607..414 970 100 Minus
2R 25286936 2R 9706755..9706948 607..414 835 95.4 Minus
Blast to na_te.dros performed on 2015-02-10 22:29:48 has no hits.

BO15661.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:52:33 Download gff for BO15661.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30002-PA 1..612 15..627 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:57:07 Download gff for BO15661.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30002-PA 1..612 15..627 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:11:57 Download gff for BO15661.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30002-RB 343..960 14..632 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:06:06 Download gff for BO15661.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30002-RB 343..960 14..632 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:06:06 Download gff for BO15661.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9704782..9704806 608..632 92 -> Minus
2R 9704871..9705064 414..607 100 -> Minus
2R 9705137..9705535 14..413 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:11:57 Download gff for BO15661.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5592287..5592311 608..632 92 -> Minus
arm_2R 5592376..5592569 414..607 100 -> Minus
arm_2R 5592642..5593040 14..413 99   Minus

BO15661.5prime Sequence

641 bp (641 high quality bases) assembled on 2006-05-30

> BO15661.5prime
GAAGTTATCAGTCGACATGTGTCCCCGATCTAAGGAGATTAGAGTGTGGC
TGGGAGAGCTCGACCTTAGTTCCACAAGTGACTGCACCACCTACAATTAT
GAACGGGTTTGCGCTCCGCCCGTGGAGGAGTTTACCATCGACAAGTGGAT
TCTTCACGAGGAGTTTAACCTCTTTTATCCCGGGTATGATATTGCCCTGA
TAAAACTAAACAAGAAAGTGGTCTTTAAAGATCACATACGACCCATATGC
CTGCCCCTGACCGACGAACTCTTGGCGTTTACCTTGCAGCTGGGACAACG
CTTCATGGCGGTGGGCTGGGGAAAAACGGAGAGTCTACGCTATGCCAACA
GTACAATGGAGGTGGATATAAGAACTGAGAAGTGCACCGACGGCAGGGAT
ACTTCGTTCCTCTGCGCCAGTGGAGATTATGTGGACACATGCAATGGGGA
CTCCGGTGGACCGCTCTTATGGAAGACCACGTTGTTTGGCAAGGATCGAG
CCGTACAATTTGGTGTGGTCAGCACTGGAAGCCAAAACTGCGGTGCTGGT
CACAAGGCCTACTACATGGATGTACCCACCTATATGCCCTGGATACTTGA
AAAGATGGCAGAATTCTCGGATGTTGCAAGCTTTCTAGACC

BO15661.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:39:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG30002-PA 612 CG30002-RA 1..609 17..625 3045 100 Plus
CG1773-PA 954 CG1773-RA 325..629 17..321 1100 94.4 Plus
CG1773-PA 954 CG1773-RA 652..905 344..597 920 94.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:10:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG30002-RB 1572 CG30002-RB 348..956 17..625 3045 100 Plus
CG1773-RA 1123 CG1773-RA 350..955 17..622 2400 93.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:10:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9705135..9705531 229..625 1985 100 Plus
2R 25286936 2R 9707019..9707412 229..622 1475 91.6 Plus
2R 25286936 2R 9704871..9705064 37..230 970 100 Plus
2R 25286936 2R 9706755..9706948 37..230 835 95.4 Plus
Blast to na_te.dros performed on 2015-02-11 13:10:30 has no hits.

BO15661.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:52:33 Download gff for BO15661.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30002-PA 1..612 17..629 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:57:09 Download gff for BO15661.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30002-PA 1..612 17..629 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:07:36 Download gff for BO15661.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30002-RB 343..960 12..630 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:44:06 Download gff for BO15661.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30002-RB 343..960 12..630 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:44:06 Download gff for BO15661.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9704871..9705064 37..230 100 -> Plus
2R 9704782..9704806 12..36 92 -> Plus
2R 9705137..9705535 231..630 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:07:36 Download gff for BO15661.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5592287..5592311 12..36 92 -> Plus
arm_2R 5592376..5592569 37..230 100 -> Plus
arm_2R 5592642..5593040 231..630 99   Plus

BO15661.complete Sequence

643 bp (643 high quality bases) assembled on 2006-08-24

GenBank Submission: FJ633538

> BO15661.complete
GAAGTTATCAGTCGACATGTGTCCCCGATCTAAGGAGATTAGAGTGTGGC
TGGGAGAGCTCGACCTTAGTTCCACAAGTGACTGCACCACCTACAATTAT
GAACGGGTTTGCGCTCCGCCCGTGGAGGAGTTTACCATCGACAAGTGGAT
TCTTCACGAGGAGTTTAACCTCTTTTATCCCGGGTATGATATTGCCCTGA
TAAAACTAAACAAGAAAGTGGTCTTTAAAGATCACATACGACCCATATGC
CTGCCCCTGACCGACGAACTCTTGGCGTTTACCTTGCAGCTGGGACAACG
CTTCATGGCGGTGGGCTGGGGAAAAACGGAGAGTCTACGCTATGCCAACA
GTACAATGGAGGTGGATATAAGAACTGAGAAGTGCACCGACGGCAGGGAT
ACTTCGTTCCTCTGCGCCAGTGGAGATTATGTGGACACATGCAATGGGGA
CTCCGGTGGACCGCTCTTATGGAAGACCACGTTGTTTGGCAAGGATCGAG
CCGTACAATTTGGTGTGGTCAGCACTGGAAGCCAAAACTGCGGTGCTGGT
CACAAGGCCTACTACATGGATGTACCCACCTATATGCCCTGGATACTTGA
AAAGATGGCAGAATTCTCGGATGTTGCAAGCTTTCTAGACCAT

BO15661.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:15:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG30002-RB 936 CG30002-PB 325..933 17..625 3045 100 Plus
CG1773-RA 954 CG1773-PA 325..930 17..622 2400 93.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:15:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG30002-RB 1572 CG30002-RB 348..956 17..625 3045 100 Plus
CG1773-RA 1123 CG1773-RA 350..955 17..622 2400 93.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:15:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9705135..9705531 229..625 1985 100 Plus
2R 25286936 2R 9707019..9707412 229..622 1475 91.6 Plus
2R 25286936 2R 9704871..9705064 37..230 970 100 Plus
2R 25286936 2R 9706755..9706948 37..230 835 95.4 Plus
Blast to na_te.dros performed on 2014-11-27 15:15:29 has no hits.

BO15661.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:59:50 Download gff for BO15661.complete
Subject Subject Range Query Range Percent Splice Strand
CG30002-RA 1..612 17..629 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:31:52 Download gff for BO15661.complete
Subject Subject Range Query Range Percent Splice Strand
CG30002-RA 400..1017 12..630 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:38:59 Download gff for BO15661.complete
Subject Subject Range Query Range Percent Splice Strand
CG30002-RB 348..956 17..627 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:59:50 Download gff for BO15661.complete
Subject Subject Range Query Range Percent Splice Strand
CG30002-RA 400..1017 12..630 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:27 Download gff for BO15661.complete
Subject Subject Range Query Range Percent Splice Strand
CG30002-RB 348..956 17..627 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:03:27 Download gff for BO15661.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9704787..9704806 17..36 100 -> Plus
2R 9704871..9705064 37..230 100 -> Plus
2R 9705137..9705531 231..627 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:38:59 Download gff for BO15661.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5592292..5592311 17..36 100 -> Plus
arm_2R 5592376..5592569 37..230 100 -> Plus
arm_2R 5592642..5593036 231..627 99   Plus

BO15661.pep Sequence

Translation from 16 to 643

> BO15661.pep
MCPRSKEIRVWLGELDLSSTSDCTTYNYERVCAPPVEEFTIDKWILHEEF
NLFYPGYDIALIKLNKKVVFKDHIRPICLPLTDELLAFTLQLGQRFMAVG
WGKTESLRYANSTMEVDIRTEKCTDGRDTSFLCASGDYVDTCNGDSGGPL
LWKTTLFGKDRAVQFGVVSTGSQNCGAGHKAYYMDVPTYMPWILEKMAEF
SDVASFLDH

BO15661.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:48:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG30002-PB 311 CG30002-PB 109..311 1..203 1105 100 Plus
CG1773-PA 317 CG1773-PA 109..310 1..202 1000 90.1 Plus
grass-PA 335 CG5896-PA 132..331 7..198 307 37.4 Plus
grass-PB 377 CG5896-PB 174..373 7..198 307 37.4 Plus
CG5909-PA 381 CG5909-PA 183..380 8..197 286 34.5 Plus