Clone BO15662 Report

Search the DGRC for BO15662

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:156
Well:62
Vector:pDNR-Dual
Associated Gene/TranscriptATPsyn-Cf6-RA
Protein status:BO15662.pep: validated full length
Sequenced Size:352

Clone Sequence Records

BO15662.5prime Sequence

350 bp (350 high quality bases) assembled on 2006-05-30

> BO15662.5prime
GAAGTTATCAGTCGACATGCTGTCGCAATCCCTGCTGAGTGGCATGCGTG
TCCTGCGCACAGAGGCCCGTCGTAACTTCGGAATCGTTGCCCCTGCCCTG
AACAAGGCCTCCGATCCCATCCAGCAGCTGTTCCTGGACAAAGTGCGCGA
GTACAAGCAGAAGAGCGCCGGTGGCAAGCTGGTGGACTCCAATCCCGATA
TTGAGCGGGAGCTGAAGACCGAACTGGACCGTGTGGCCAAGCAGTTTGGC
AGCGATGGCAAGACCGACATGCTGAAGTTCCCCGAATTCCAGTTCCCCGA
TGTTAAGGTCGATCCCATCACCCAGGCCCCACAGGCAAGCTTTCTAGACC

BO15662.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:39:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG4412-PA 321 ATPsyn-Cf6-RA 1..318 17..334 1590 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:45:34
Subject Length Description Subject Range Query Range Score Percent Strand
ATPsyn-Cf6-RB 616 CG4412-RB 150..467 17..334 1590 100 Plus
ATPsyn-Cf6-RC 586 CG4412-RC 85..402 17..334 1590 100 Plus
ATPsyn-Cf6-RA 526 CG4412-RA 85..402 17..334 1590 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:45:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23355404..23355569 334..169 830 100 Minus
3R 32079331 3R 23355634..23355785 168..17 760 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:45:32 has no hits.

BO15662.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:52:36 Download gff for BO15662.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4412-PA 1..321 17..335 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:57:11 Download gff for BO15662.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4412-PA 1..321 17..335 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:50:09 Download gff for BO15662.5prime
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-Cf6-RA 85..402 17..334 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:50:12 Download gff for BO15662.5prime
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-Cf6-RA 85..402 17..334 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:50:12 Download gff for BO15662.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23355404..23355569 169..334 100 <- Minus
3R 23355634..23355797 6..168 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:50:09 Download gff for BO15662.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19181126..19181291 169..334 100 <- Minus
arm_3R 19181356..19181519 6..168 97   Minus

BO15662.3prime Sequence

350 bp (350 high quality bases) assembled on 2006-05-30

> BO15662.3prime
ATGGTCTAGAAAGCTTGCCTGTGGGGCCTGGGTGATGGGATCGACCTTAA
CATCGGGGAACTGGAATTCGGGGAACTTCAGCATGTCGGTCTTGCCATCG
CTGCCAAACTGCTTGGCCACACGGTCCAGTTCGGTCTTCAGCTCCCGCTC
AATATCGGGATTGGAGTCCACCAGCTTGCCACCGGCGCTCTTCTGCTTGT
ACTCGCGCACTTTGTCCAGGAACAGCTGCTGGATGGGATCGGAGGCCTTG
TTCAGGGCAGGGGCAACGATTCCGAAGTTACGACGGGCCTCTGTGCGCAG
GACACGCATGCCACTCAGCAGGGATTGCGACAGCATGTCGACTGATAACT

BO15662.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:39:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG4412-PA 321 ATPsyn-Cf6-RA 1..318 336..19 1590 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:58:43
Subject Length Description Subject Range Query Range Score Percent Strand
ATPsyn-Cf6-RB 616 CG4412-RB 150..467 336..19 1590 100 Minus
ATPsyn-Cf6-RC 586 CG4412-RC 85..402 336..19 1590 100 Minus
ATPsyn-Cf6-RA 526 CG4412-RA 85..402 336..19 1590 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:58:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23355404..23355569 19..184 830 100 Plus
3R 32079331 3R 23355634..23355785 185..336 760 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:58:40 has no hits.

BO15662.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:52:35 Download gff for BO15662.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4412-PA 1..321 18..336 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:57:10 Download gff for BO15662.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4412-PA 1..321 18..336 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:27:42 Download gff for BO15662.3prime
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-Cf6-RA 85..402 19..336 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:34:21 Download gff for BO15662.3prime
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-Cf6-RA 85..402 19..336 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:34:21 Download gff for BO15662.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23355404..23355569 19..184 100 <- Plus
3R 23355634..23355797 185..347 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:27:42 Download gff for BO15662.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19181126..19181291 19..184 100 <- Plus
arm_3R 19181356..19181519 185..347 97   Plus

BO15662.complete Sequence

352 bp (352 high quality bases) assembled on 2006-08-24

GenBank Submission: FJ633539

> BO15662.complete
GAAGTTATCAGTCGACATGCTGTCGCAATCCCTGCTGAGTGGCATGCGTG
TCCTGCGCACAGAGGCCCGTCGTAACTTCGGAATCGTTGCCCCTGCCCTG
AACAAGGCCTCCGATCCCATCCAGCAGCTGTTCCTGGACAAAGTGCGCGA
GTACAAGCAGAAGAGCGCCGGTGGCAAGCTGGTGGACTCCAATCCCGATA
TTGAGCGGGAGCTGAAGACCGAACTGGACCGTGTGGCCAAGCAGTTTGGC
AGCGATGGCAAGACCGACATGCTGAAGTTCCCCGAATTCCAGTTCCCCGA
TGTTAAGGTCGATCCCATCACCCAGGCCCCACAGGCAAGCTTTCTAGACC
AT

BO15662.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:54:49
Subject Length Description Subject Range Query Range Score Percent Strand
ATPsyn-Cf6-RB 321 CG4412-PB 1..318 17..334 1590 100 Plus
ATPsyn-Cf6-RC 321 CG4412-PC 1..318 17..334 1590 100 Plus
ATPsyn-Cf6-RA 321 CG4412-PA 1..318 17..334 1590 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:54:51
Subject Length Description Subject Range Query Range Score Percent Strand
ATPsyn-Cf6-RB 616 CG4412-RB 150..467 17..334 1590 100 Plus
ATPsyn-Cf6-RC 586 CG4412-RC 85..402 17..334 1590 100 Plus
ATPsyn-Cf6-RA 526 CG4412-RA 85..402 17..334 1590 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:54:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23355404..23355569 334..169 830 100 Minus
3R 32079331 3R 23355634..23355785 168..17 760 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:54:48 has no hits.

BO15662.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:52:59 Download gff for BO15662.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-Cf6-RA 1..321 17..335 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:08:55 Download gff for BO15662.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-Cf6-RA 81..398 17..334 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:02:14 Download gff for BO15662.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-Cf6-RA 85..402 17..336 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:53:00 Download gff for BO15662.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-Cf6-RA 81..398 17..334 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:51 Download gff for BO15662.complete
Subject Subject Range Query Range Percent Splice Strand
ATPsyn-Cf6-RA 85..402 17..336 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:51 Download gff for BO15662.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23355402..23355569 169..336 98 <- Minus
3R 23355634..23355785 17..168 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:02:14 Download gff for BO15662.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19181124..19181291 169..336 98 <- Minus
arm_3R 19181356..19181507 17..168 100   Minus

BO15662.pep Sequence

Translation from 16 to 352

> BO15662.pep
MLSQSLLSGMRVLRTEARRNFGIVAPALNKASDPIQQLFLDKVREYKQKS
AGGKLVDSNPDIERELKTELDRVAKQFGSDGKTDMLKFPEFQFPDVKVDP
ITQAPQASFLDH

BO15662.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:50:29
Subject Length Description Subject Range Query Range Score Percent Strand
ATPsyn-Cf6-PB 106 CG4412-PB 1..106 1..106 534 100 Plus
ATPsyn-Cf6-PC 106 CG4412-PC 1..106 1..106 534 100 Plus
ATPsyn-Cf6-PA 106 CG4412-PA 1..106 1..106 534 100 Plus
CG12027-PA 147 CG12027-PA 26..95 33..102 203 54.3 Plus