BO15663.complete Sequence
1633 bp (1633 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633540
> BO15663.complete
GAAGTTATCAGTCGACATGAGTGTCGAAAGAGATGACGAGTATCTAAAAT
TTGTGCCCCACACGATGTCGTATCAAGTCGTCCCGGGATCGGAGTTCCAG
TGCAAGAAGGCCAGCTATAGCTCCAGGAAGCTCTCCACCATCGACGAGCA
GGACGACGATGCTGCCAACCGAAGGGGAATGATGCACCAGATTCTGGCCA
CCTGTGCTGTACTCTTACTTTCCGCTGGATGCGGCATGCCCATTGGATTC
TCGGCCATCCTGTTGCCCCAGCTGATGGATAACAACTCCACGGAGATACC
CATTGATGTAGAGACGGGCTCCTGGATAGCAAGTGTCCATAGCCTGGCCA
CACCATTTGGATCCCTGCTGTCGGGACCTCTGGCGGACTATTTGGGTCGC
CGTAGGACCCTGATTCTCTCTGTGATTCCCCTCCTCCTGGGATGGAGCAC
CTTGGCGATCGCCAAGAGCATCAAGGTGGTGATCTTTGCACGCTTCCTGT
GCGGATTCGCCACCGGAATTCTGGGTGGACCCGGACAGGTGTACATTGCG
GAAACGGCGGAACCCAATCTGCGGAGTCTGCTGATCGGCGCGCCCTATGT
GGCCTACTCAAGCGGCATCCTAATGGTCTACTCCCTGGGCTCCATGATGT
ACTGGCGTAGTGTTGCGTGGTGCGCCAACGTGCTGCCCCTGCTGTCCATG
GTGTCTATCTCGTTTATACCGGAGACTCCGGCCTGGCTACTCCGCAATGG
CCACGAGAAGCGTGCGCTGCAGGCCCTCTCGTTCCTGCGGGGCAGCGAGA
TCAGTGCGCAGAAGGAGCTGAATGATATGAAGCAGAGGCTGGCCAAGGAG
CGGGTGACCACCAAGACGAACGAGAACATCTTCCAGCTGTGCTGCCAGCG
CGTGGCCATCAAGCCGCTGGTCATTGTGATCGTGTTCTCGCTGCTGCAGA
TGTTCTCCGGCACGTTCATCGTGATCTTCTATGCCGTGGACATGATCTCG
GAGTTCGGAGCGGAGTTCGACTCCAAGCAGGCGGCCATTGCGACGGCAGT
TGTCCGGGTGATCTGCTGCATGGTCTTCTGCGTAGTCCTGATCTTCGTTC
GCCGCCGCAGGATCATGATAGTGTCGGGAATCGGCTCCGGCTTGTTCTGC
CTGGTGCTCAGTGTCTATCAGTATGCCAGATTCGATCAACCGAAAATGTC
GTACGACGTATTCGTTGGTGCCGGCTGTCTCTTGGGCTACATCATCTTCA
ACACGGCTCTGATGGTGATGCCCGGCATTATGATCGGCGAGCTCTTCCCG
GCTAGGATACGCGGACGGACTGCCGGCGGAGTGTTTGCCTCCATGAACGT
CGCTCTGTTCATCTTCGCGAAGAAGTTTCCCGCTTTGCAGGCCATGCTCA
AGATGCGCGGCGTGTTCCTGGTCTTCGGCGTGTCCAGTTTCCTGCTCACT
GCCTTTATGTGCCTTTTCCAGCCGGAGACGAAGGGCCGCAGCCTGGAGCA
CATCGAGGACTATTTCAACGGGGACAACTGGCTCTGGTTCCGGCGGGATC
GAGGCTACAAGACGGTCAACCTGCAGCCCCTGGAGCCATTGAAGGACACC
CGGGGGCTGGAGGCCGCAAGCTTTCTAGACCAT
BO15663.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:42:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4797-RB | 1602 | CG4797-PB | 1..1599 | 17..1615 | 7995 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:42:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4797-RB | 2106 | CG4797-RB | 264..1862 | 17..1615 | 7995 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:42:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23812429..23813507 | 1615..537 | 5395 | 100 | Minus |
| 2R | 25286936 | 2R | 23814322..23814535 | 541..328 | 1070 | 100 | Minus |
| 2R | 25286936 | 2R | 23815442..23815603 | 190..29 | 810 | 100 | Minus |
| 2R | 25286936 | 2R | 23814596..23814736 | 329..189 | 705 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:42:19 has no hits.
BO15663.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:52:48 Download gff for
BO15663.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4797-RB | 1..1602 | 17..1616 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:08:38 Download gff for
BO15663.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4797-RB | 263..1861 | 17..1615 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:49:52 Download gff for
BO15663.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4797-RB | 264..1862 | 17..1617 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:52:48 Download gff for
BO15663.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4797-RB | 263..1861 | 17..1615 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:17:05 Download gff for
BO15663.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4797-RB | 264..1862 | 17..1617 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:17:05 Download gff for
BO15663.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23814325..23814533 | 330..538 | 100 | <- | Minus |
| 2R | 23814596..23814734 | 191..329 | 100 | <- | Minus |
| 2R | 23815442..23815601 | 31..190 | 100 | <- | Minus |
| 2R | 23812427..23813505 | 539..1617 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:49:52 Download gff for
BO15663.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19699950..19701028 | 539..1617 | 99 | <- | Minus |
| arm_2R | 19701848..19702056 | 330..538 | 100 | <- | Minus |
| arm_2R | 19702119..19702257 | 191..329 | 100 | <- | Minus |
| arm_2R | 19702965..19703124 | 31..190 | 100 | <- | Minus |
BO15663.pep Sequence
Translation from 16 to 1633
> BO15663.pep
MSVERDDEYLKFVPHTMSYQVVPGSEFQCKKASYSSRKLSTIDEQDDDAA
NRRGMMHQILATCAVLLLSAGCGMPIGFSAILLPQLMDNNSTEIPIDVET
GSWIASVHSLATPFGSLLSGPLADYLGRRRTLILSVIPLLLGWSTLAIAK
SIKVVIFARFLCGFATGILGGPGQVYIAETAEPNLRSLLIGAPYVAYSSG
ILMVYSLGSMMYWRSVAWCANVLPLLSMVSISFIPETPAWLLRNGHEKRA
LQALSFLRGSEISAQKELNDMKQRLAKERVTTKTNENIFQLCCQRVAIKP
LVIVIVFSLLQMFSGTFIVIFYAVDMISEFGAEFDSKQAAIATAVVRVIC
CMVFCVVLIFVRRRRIMIVSGIGSGLFCLVLSVYQYARFDQPKMSYDVFV
GAGCLLGYIIFNTALMVMPGIMIGELFPARIRGRTAGGVFASMNVALFIF
AKKFPALQAMLKMRGVFLVFGVSSFLLTAFMCLFQPETKGRSLEHIEDYF
NGDNWLWFRRDRGYKTVNLQPLEPLKDTRGLEAASFLDH
BO15663.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:59:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4797-PB | 533 | CG4797-PB | 1..533 | 1..533 | 2726 | 100 | Plus |
| Tret1-2-PA | 488 | CG8234-PA | 28..466 | 58..497 | 587 | 31.6 | Plus |
| Tret1-1-PB | 489 | CG30035-PB | 28..485 | 58..522 | 573 | 30.5 | Plus |
| Tret1-1-PA | 857 | CG30035-PA | 396..853 | 58..522 | 573 | 30.5 | Plus |
| CG8249-PC | 521 | CG8249-PC | 12..496 | 24..500 | 476 | 29.2 | Plus |
