Clone BO15668 Report

Search the DGRC for BO15668

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:156
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptRpII18-RA
Protein status:BO15668.pep: validated full length
Sequenced Size:427

Clone Sequence Records

BO15668.3prime Sequence

425 bp (425 high quality bases) assembled on 2006-05-30

> BO15668.3prime
ATGGTCTAGAAAGCTTGCGTTGTCCACCATGATGAGCTCGTCGATGCTCC
AGTCCTCGTAGGAGTGATCCGGCAGGTATCGGCGGATGATGATGGGAATT
TTCTTTTGTTTCAGCTCTTTCATGGCGATCTGCAGGGGGTCCGTTTCCCC
GTCCAGCTCCACCATGATGGGTGCGCACATGGCGATCTGAAGCGCTCGTG
TGCCCAGAACTCTGGCGCGCTCGTATTTCGTCATGTACTTTGTGGTAATG
CGCTTGGACTTGGGCACACCGCCTCCGCCCGCACCACCGGGAGCTATGAT
CTCGATGTTGTCCGCCTCCTCCTCCTGGTTAATGTCCTCGTCCACGTCCT
CGTCGACGTCGTCGAAGTCATCGCCGCCAACGTCGTCGTTGTCGTAGTCC
GCATCATCCATGTCGACTGATAACT

BO15668.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:39:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG1163-PA 396 RpII18-RA 1..393 411..19 1965 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:56:19
Subject Length Description Subject Range Query Range Score Percent Strand
RpII18-RA 541 CG1163-RA 93..485 411..19 1965 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:56:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5371978..5372341 382..19 1820 100 Minus
Blast to na_te.dros performed on 2015-02-11 11:56:16 has no hits.

BO15668.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:52:39 Download gff for BO15668.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1163-PA 1..396 18..411 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:57:15 Download gff for BO15668.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1163-PA 1..396 18..411 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:47:44 Download gff for BO15668.3prime
Subject Subject Range Query Range Percent Splice Strand
RpII18-RA 88..490 12..419 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:19:41 Download gff for BO15668.3prime
Subject Subject Range Query Range Percent Splice Strand
RpII18-RA 88..490 12..419 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:19:41 Download gff for BO15668.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5371978..5372346 12..382 99   Minus
3R 5371882..5371915 383..419 91 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:47:44 Download gff for BO15668.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1197604..1197637 383..419 91 -> Minus
arm_3R 1197700..1198068 12..382 99   Minus

BO15668.5prime Sequence

425 bp (425 high quality bases) assembled on 2006-05-30

> BO15668.5prime
GAAGTTATCAGTCGACATGGATGATGCGGACTACGACAACGACGACGTTG
GCGGCGATGACTTCGACGACGTCGACGAGGACGTGGACGAGGACATTAAC
CAGGAGGAGGAGGCGGACAACATCGAGATCATAGCTCCCGGTGGTGCGGG
CGGAGGCGGTGTGCCCAAGTCCAAGCGCATTACCACAAAGTACATGACGA
AATACGAGCGCGCCAGAGTTCTGGGCACACGAGCGCTTCAGATCGCCATG
TGCGCACCCATCATGGTGGAGCTGGACGGGGAAACGGACCCCCTGCAGAT
CGCCATGAAAGAGCTGAAACAAAAGAAAATTCCCATCATCATCCGCCGAT
ACCTGCCGGATCACTCCTACGAGGACTGGAGCATCGACGAGCTCATCATG
GTGGACAACGCAAGCTTTCTAGACC

BO15668.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:39:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG1163-PA 396 RpII18-RA 1..393 17..409 1965 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:45:25
Subject Length Description Subject Range Query Range Score Percent Strand
RpII18-RA 541 CG1163-RA 93..485 17..409 1965 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:45:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5371978..5372341 46..409 1820 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:45:22 has no hits.

BO15668.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:52:40 Download gff for BO15668.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1163-PA 1..396 17..410 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:57:16 Download gff for BO15668.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1163-PA 1..396 17..410 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:50:07 Download gff for BO15668.5prime
Subject Subject Range Query Range Percent Splice Strand
RpII18-RA 88..490 9..416 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:50:10 Download gff for BO15668.5prime
Subject Subject Range Query Range Percent Splice Strand
RpII18-RA 88..490 9..416 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:50:10 Download gff for BO15668.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5371882..5371915 9..45 91 -> Plus
3R 5371978..5372346 46..416 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:50:07 Download gff for BO15668.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1197604..1197637 9..45 91 -> Plus
arm_3R 1197700..1198068 46..416 99   Plus

BO15668.complete Sequence

427 bp (427 high quality bases) assembled on 2006-08-24

GenBank Submission: FJ633544

> BO15668.complete
GAAGTTATCAGTCGACATGGATGATGCGGACTACGACAACGACGACGTTG
GCGGCGATGACTTCGACGACGTCGACGAGGACGTGGACGAGGACATTAAC
CAGGAGGAGGAGGCGGACAACATCGAGATCATAGCTCCCGGTGGTGCGGG
CGGAGGCGGTGTGCCCAAGTCCAAGCGCATTACCACAAAGTACATGACGA
AATACGAGCGCGCCAGAGTTCTGGGCACACGAGCGCTTCAGATCGCCATG
TGCGCACCCATCATGGTGGAGCTGGACGGGGAAACGGACCCCCTGCAGAT
CGCCATGAAAGAGCTGAAACAAAAGAAAATTCCCATCATCATCCGCCGAT
ACCTGCCGGATCACTCCTACGAGGACTGGAGCATCGACGAGCTCATCATG
GTGGACAACGCAAGCTTTCTAGACCAT

BO15668.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:38:23
Subject Length Description Subject Range Query Range Score Percent Strand
RpII18-RA 396 CG1163-PA 1..393 17..409 1965 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:38:23
Subject Length Description Subject Range Query Range Score Percent Strand
RpII18-RA 541 CG1163-RA 93..485 17..409 1965 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:38:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5371978..5372341 46..409 1820 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:38:22 has no hits.

BO15668.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:52:52 Download gff for BO15668.complete
Subject Subject Range Query Range Percent Splice Strand
RpII18-RA 1..396 17..410 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:08:44 Download gff for BO15668.complete
Subject Subject Range Query Range Percent Splice Strand
RpII18-RA 85..487 9..416 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:06 Download gff for BO15668.complete
Subject Subject Range Query Range Percent Splice Strand
RpII18-RA 93..485 17..411 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:52:52 Download gff for BO15668.complete
Subject Subject Range Query Range Percent Splice Strand
RpII18-RA 85..487 9..416 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:23:15 Download gff for BO15668.complete
Subject Subject Range Query Range Percent Splice Strand
RpII18-RA 93..485 17..411 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:23:15 Download gff for BO15668.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5371887..5371915 17..45 100 -> Plus
3R 5371978..5372341 46..411 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:06 Download gff for BO15668.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1197609..1197637 17..45 100 -> Plus
arm_3R 1197700..1198063 46..411 99   Plus

BO15668.pep Sequence

Translation from 16 to 427

> BO15668.pep
MDDADYDNDDVGGDDFDDVDEDVDEDINQEEEADNIEIIAPGGAGGGGVP
KSKRITTKYMTKYERARVLGTRALQIAMCAPIMVELDGETDPLQIAMKEL
KQKKIPIIIRRYLPDHSYEDWSIDELIMVDNASFLDH

BO15668.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:59:33
Subject Length Description Subject Range Query Range Score Percent Strand
RpII18-PA 131 CG1163-PA 1..131 1..131 686 100 Plus