Clone Sequence Records
BO15668.3prime Sequence
425 bp (425 high quality bases) assembled on 2006-05-30
> BO15668.3prime
ATGGTCTAGAAAGCTTGCGTTGTCCACCATGATGAGCTCGTCGATGCTCC
AGTCCTCGTAGGAGTGATCCGGCAGGTATCGGCGGATGATGATGGGAATT
TTCTTTTGTTTCAGCTCTTTCATGGCGATCTGCAGGGGGTCCGTTTCCCC
GTCCAGCTCCACCATGATGGGTGCGCACATGGCGATCTGAAGCGCTCGTG
TGCCCAGAACTCTGGCGCGCTCGTATTTCGTCATGTACTTTGTGGTAATG
CGCTTGGACTTGGGCACACCGCCTCCGCCCGCACCACCGGGAGCTATGAT
CTCGATGTTGTCCGCCTCCTCCTCCTGGTTAATGTCCTCGTCCACGTCCT
CGTCGACGTCGTCGAAGTCATCGCCGCCAACGTCGTCGTTGTCGTAGTCC
GCATCATCCATGTCGACTGATAACT
BO15668.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:39:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1163-PA | 396 | RpII18-RA | 1..393 | 411..19 | 1965 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:56:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpII18-RA | 541 | CG1163-RA | 93..485 | 411..19 | 1965 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:56:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5371978..5372341 | 382..19 | 1820 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:56:16 has no hits.
BO15668.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:52:39 Download gff for
BO15668.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1163-PA | 1..396 | 18..411 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:57:15 Download gff for
BO15668.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1163-PA | 1..396 | 18..411 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:47:44 Download gff for
BO15668.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpII18-RA | 88..490 | 12..419 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:19:41 Download gff for
BO15668.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpII18-RA | 88..490 | 12..419 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:19:41 Download gff for
BO15668.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5371978..5372346 | 12..382 | 99 | | Minus |
3R | 5371882..5371915 | 383..419 | 91 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:47:44 Download gff for
BO15668.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1197604..1197637 | 383..419 | 91 | -> | Minus |
arm_3R | 1197700..1198068 | 12..382 | 99 | | Minus |
BO15668.5prime Sequence
425 bp (425 high quality bases) assembled on 2006-05-30
> BO15668.5prime
GAAGTTATCAGTCGACATGGATGATGCGGACTACGACAACGACGACGTTG
GCGGCGATGACTTCGACGACGTCGACGAGGACGTGGACGAGGACATTAAC
CAGGAGGAGGAGGCGGACAACATCGAGATCATAGCTCCCGGTGGTGCGGG
CGGAGGCGGTGTGCCCAAGTCCAAGCGCATTACCACAAAGTACATGACGA
AATACGAGCGCGCCAGAGTTCTGGGCACACGAGCGCTTCAGATCGCCATG
TGCGCACCCATCATGGTGGAGCTGGACGGGGAAACGGACCCCCTGCAGAT
CGCCATGAAAGAGCTGAAACAAAAGAAAATTCCCATCATCATCCGCCGAT
ACCTGCCGGATCACTCCTACGAGGACTGGAGCATCGACGAGCTCATCATG
GTGGACAACGCAAGCTTTCTAGACC
BO15668.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:39:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1163-PA | 396 | RpII18-RA | 1..393 | 17..409 | 1965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:45:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpII18-RA | 541 | CG1163-RA | 93..485 | 17..409 | 1965 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:45:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5371978..5372341 | 46..409 | 1820 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:45:22 has no hits.
BO15668.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:52:40 Download gff for
BO15668.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1163-PA | 1..396 | 17..410 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:57:16 Download gff for
BO15668.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1163-PA | 1..396 | 17..410 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:50:07 Download gff for
BO15668.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpII18-RA | 88..490 | 9..416 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:50:10 Download gff for
BO15668.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpII18-RA | 88..490 | 9..416 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:50:10 Download gff for
BO15668.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5371882..5371915 | 9..45 | 91 | -> | Plus |
3R | 5371978..5372346 | 46..416 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:50:07 Download gff for
BO15668.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1197604..1197637 | 9..45 | 91 | -> | Plus |
arm_3R | 1197700..1198068 | 46..416 | 99 | | Plus |
BO15668.complete Sequence
427 bp (427 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633544
> BO15668.complete
GAAGTTATCAGTCGACATGGATGATGCGGACTACGACAACGACGACGTTG
GCGGCGATGACTTCGACGACGTCGACGAGGACGTGGACGAGGACATTAAC
CAGGAGGAGGAGGCGGACAACATCGAGATCATAGCTCCCGGTGGTGCGGG
CGGAGGCGGTGTGCCCAAGTCCAAGCGCATTACCACAAAGTACATGACGA
AATACGAGCGCGCCAGAGTTCTGGGCACACGAGCGCTTCAGATCGCCATG
TGCGCACCCATCATGGTGGAGCTGGACGGGGAAACGGACCCCCTGCAGAT
CGCCATGAAAGAGCTGAAACAAAAGAAAATTCCCATCATCATCCGCCGAT
ACCTGCCGGATCACTCCTACGAGGACTGGAGCATCGACGAGCTCATCATG
GTGGACAACGCAAGCTTTCTAGACCAT
BO15668.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:38:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpII18-RA | 396 | CG1163-PA | 1..393 | 17..409 | 1965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:38:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpII18-RA | 541 | CG1163-RA | 93..485 | 17..409 | 1965 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:38:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5371978..5372341 | 46..409 | 1820 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:38:22 has no hits.
BO15668.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:52:52 Download gff for
BO15668.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpII18-RA | 1..396 | 17..410 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:08:44 Download gff for
BO15668.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpII18-RA | 85..487 | 9..416 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:06 Download gff for
BO15668.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpII18-RA | 93..485 | 17..411 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:52:52 Download gff for
BO15668.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpII18-RA | 85..487 | 9..416 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:23:15 Download gff for
BO15668.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpII18-RA | 93..485 | 17..411 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:23:15 Download gff for
BO15668.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5371887..5371915 | 17..45 | 100 | -> | Plus |
3R | 5371978..5372341 | 46..411 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:06 Download gff for
BO15668.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1197609..1197637 | 17..45 | 100 | -> | Plus |
arm_3R | 1197700..1198063 | 46..411 | 99 | | Plus |
BO15668.pep Sequence
Translation from 16 to 427
> BO15668.pep
MDDADYDNDDVGGDDFDDVDEDVDEDINQEEEADNIEIIAPGGAGGGGVP
KSKRITTKYMTKYERARVLGTRALQIAMCAPIMVELDGETDPLQIAMKEL
KQKKIPIIIRRYLPDHSYEDWSIDELIMVDNASFLDH
BO15668.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:59:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpII18-PA | 131 | CG1163-PA | 1..131 | 1..131 | 686 | 100 | Plus |