Clone Sequence Records
BO15669.3prime Sequence
800 bp (800 high quality bases) assembled on 2006-06-02
> BO15669.3prime
ATGGTCTAGAAAGCTTGCGCGTGGGCACATGGCATGGCGACCGCCGTCCA
CCGGCAGGCTGACTCCAGTGCTGAAGCTGGCCTCATCGCTGGCCAGGAAG
GCAATGGCCGCAGCCACCTCCTTGACATCTCCAGGACGACCCAAGGCATG
GGTGGTCTTGGAGTGTTCCAGGAACTTTTTGTACGTCTCCGCATCCATGC
CGCCGCGGGCATGCAGATTGGTGACCGTCACGCCGGGATTCACGCAGTTC
ACGCGCACACCCTTGGCAGCCAGCTCCAACGCCACACAGCGGGTGAACTG
ATCCACTCCCATTTTGGATATGTTGTAGGCCAGAACGCCAGGGAAGGAGC
GAATCCCATTGACACTGGACACGTTCACGATGTTGCCCTTGGTCTTGACC
AGCTCGGGGGTGGCCAGCATAGTAAGGTGGTAGATTGCCCTCAGGTTGGT
GTTCATGACGCGGTCGTACTGCTCCAGGCTAGTCGTCTCGATGGTGCCCG
TCTCGATGATTCCGGCATTGTTGACCAGCACATCCAATTTGCCGTACTGC
TGCAGGGTTTCCGACCAAATCCTCTGGGTGTCCGCCTCCTTGGCAATGTC
GCCCACCACCAGGGCCGGCTGTGATTGGCTCACCTTGCTGCACTCAGCGG
CTACCTTCTTCAGGTTCTCCACATTGCGTCCATTGAGAGCCAGACAGGCG
CCGTACTTGGCAAACTTAATGGCGGTTGCAGCTCCGATTCCGGAGCTTGC
TCCCGTAATAAGGACCACTTTGCCCGCGAAATTCATGTCGACTGATAACT
BO15669.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:39:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31548-PA | 771 | CG31548-RA | 1..768 | 786..19 | 3840 | 100 | Minus |
CG12171-PA | 774 | CG12171-RA | 664..767 | 126..23 | 370 | 94.2 | Minus |
CG31549-PA | 774 | CG31549-RA | 613..718 | 177..72 | 305 | 91.5 | Minus |
CG31549-PA | 774 | CG31549-RA | 370..429 | 420..361 | 150 | 90 | Minus |
CG12171-PA | 774 | CG12171-RA | 512..560 | 278..230 | 145 | 91.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:02:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31548-RA | 952 | CG31548-RA | 47..815 | 787..19 | 3845 | 100 | Minus |
CG12171-RA | 1014 | CG12171-RA | 324..832 | 531..23 | 985 | 79.8 | Minus |
CG31549-RB | 991 | CG31549-RB | 321..832 | 534..23 | 880 | 78.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:02:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5636038..5636806 | 19..787 | 3845 | 100 | Plus |
3R | 32079331 | 3R | 5633950..5634458 | 531..23 | 985 | 79.6 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:02:42 has no hits.
BO15669.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:52:41 Download gff for
BO15669.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31548-PA | 1..771 | 15..786 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:57:17 Download gff for
BO15669.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31548-PA | 1..771 | 15..786 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:32:54 Download gff for
BO15669.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31548-RA | 40..818 | 15..796 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:49:16 Download gff for
BO15669.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31548-RA | 40..818 | 15..796 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:49:16 Download gff for
BO15669.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5636035..5636813 | 15..796 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:32:54 Download gff for
BO15669.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1461757..1462535 | 15..796 | 99 | | Plus |
BO15669.5prime Sequence
800 bp (800 high quality bases) assembled on 2006-05-30
> BO15669.5prime
GAAGTTATCAGTCGACATGAATTTCGCGGGCAAAGTGGTCCTTATTACGG
GAGCAAGCTCCGGAATCGGAGCTGCAACCGCCATTAAGTTTGCCAAGTAC
GGCGCCTGTCTGGCTCTCAATGGACGCAATGTGGAGAACCTGAAGAAGGT
AGCCGCTGAGTGCAGCAAGGTGAGCCAATCACAGCCGGCCCTGGTGGTGG
GCGACATTGCCAAGGAGGCGGACACCCAGAGGATTTGGTCGGAAACCCTG
CAGCAGTACGGCAAATTGGATGTGCTGGTCAACAATGCCGGAATCATCGA
GACGGGCACCATCGAGACGACTAGCCTGGAGCAGTACGACCGCGTCATGA
ACACCAACCTGAGGGCAATCTACCACCTTACTATGCTGGCCACCCCCGAG
CTGGTCAAGACCAAGGGCAACATCGTGAACGTGTCCAGTGTCAATGGGAT
TCGCTCCTTCCCTGGCGTTCTGGCCTACAACATATCCAAAATGGGAGTGG
ATCAGTTCACCCGCTGTGTGGCGTTGGAGCTGGCTGCCAAGGGTGTGCGC
GTGAACTGCGTGAATCCCGGCGTGACGGTCACCAATCTGCATGCCCGCGG
CGGCATGGATGCGGAGACGTACAAAAAGTTCCTGGAACACTCCAAGACCA
CCCATGCCTTGGGTCGTCCTGGAGATGTCAAGGAGGTGGCTGCGGCCATT
GCCTTCCTGGCCAGCGATGAGGCCAGCTTCAGCACTGGAGTCAGCCTGCC
GGTGGACGGCGGTCGCCATGCCATGTGCCCACGCGCAAGCTTTCTAGACC
BO15669.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:39:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31548-PA | 771 | CG31548-RA | 1..768 | 17..784 | 3840 | 100 | Plus |
CG12171-PA | 774 | CG12171-RA | 664..767 | 677..780 | 370 | 94.2 | Plus |
CG31549-PA | 774 | CG31549-RA | 613..718 | 626..731 | 305 | 91.5 | Plus |
CG31549-PA | 774 | CG31549-RA | 370..429 | 383..442 | 150 | 90 | Plus |
CG12171-PA | 774 | CG12171-RA | 512..560 | 525..573 | 145 | 91.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:10:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31548-RA | 952 | CG31548-RA | 47..815 | 16..784 | 3845 | 100 | Plus |
CG12171-RA | 1014 | CG12171-RA | 324..832 | 272..780 | 985 | 79.8 | Plus |
CG31549-RB | 991 | CG31549-RB | 321..832 | 269..780 | 880 | 78.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:10:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5636038..5636806 | 784..16 | 3845 | 100 | Minus |
3R | 32079331 | 3R | 5633950..5634458 | 272..780 | 985 | 79.6 | Plus |
Blast to na_te.dros performed on 2015-02-11 13:10:14 has no hits.
BO15669.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:52:42 Download gff for
BO15669.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31548-PA | 1..771 | 17..788 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:57:19 Download gff for
BO15669.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31548-PA | 1..771 | 17..788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:07:32 Download gff for
BO15669.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31548-RA | 40..818 | 7..788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:43:28 Download gff for
BO15669.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31548-RA | 40..818 | 7..788 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:43:28 Download gff for
BO15669.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5636035..5636813 | 7..788 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:07:32 Download gff for
BO15669.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1461757..1462535 | 7..788 | 99 | | Minus |
BO15669.complete Sequence
802 bp (802 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633545
> BO15669.complete
GAAGTTATCAGTCGACATGAATTTCGCGGGCAAAGTGGTCCTTATTACGG
GAGCAAGCTCCGGAATCGGAGCTGCAACCGCCATTAAGTTTGCCAAGTAC
GGCGCCTGTCTGGCTCTCAATGGACGCAATGTGGAGAACCTGAAGAAGGT
AGCCGCTGAGTGCAGCAAGGTGAGCCAATCACAGCCGGCCCTGGTGGTGG
GCGACATTGCCAAGGAGGCGGACACCCAGAGGATTTGGTCGGAAACCCTG
CAGCAGTACGGCAAATTGGATGTGCTGGTCAACAATGCCGGAATCATCGA
GACGGGCACCATCGAGACGACTAGCCTGGAGCAGTACGACCGCGTCATGA
ACACCAACCTGAGGGCAATCTACCACCTTACTATGCTGGCCACCCCCGAG
CTGGTCAAGACCAAGGGCAACATCGTGAACGTGTCCAGTGTCAATGGGAT
TCGCTCCTTCCCTGGCGTTCTGGCCTACAACATATCCAAAATGGGAGTGG
ATCAGTTCACCCGCTGTGTGGCGTTGGAGCTGGCTGCCAAGGGTGTGCGC
GTGAACTGCGTGAATCCCGGCGTGACGGTCACCAATCTGCATGCCCGCGG
CGGCATGGATGCGGAGACGTACAAAAAGTTCCTGGAACACTCCAAGACCA
CCCATGCCTTGGGTCGTCCTGGAGATGTCAAGGAGGTGGCTGCGGCCATT
GCCTTCCTGGCCAGCGATGAGGCCAGCTTCAGCACTGGAGTCAGCCTGCC
GGTGGACGGCGGTCGCCATGCCATGTGCCCACGCGCAAGCTTTCTAGACC
AT
BO15669.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:06:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31548-RA | 771 | CG31548-PA | 1..768 | 17..784 | 3840 | 100 | Plus |
CG12171-RA | 774 | CG12171-PA | 259..767 | 272..780 | 985 | 79.6 | Plus |
CG31549-RB | 774 | CG31549-PB | 256..767 | 269..780 | 880 | 78.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:06:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31548-RA | 952 | CG31548-RA | 47..815 | 16..784 | 3845 | 100 | Plus |
CG12171-RA | 1014 | CG12171-RA | 324..832 | 272..780 | 985 | 79.6 | Plus |
CG31549-RB | 991 | CG31549-RB | 321..832 | 269..780 | 880 | 78.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:06:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5636038..5636806 | 784..16 | 3845 | 100 | Minus |
3R | 32079331 | 3R | 5633950..5634458 | 272..780 | 985 | 79.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:06:42 has no hits.
BO15669.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:45:39 Download gff for
BO15669.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31548-RA | 1..771 | 17..788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:59:39 Download gff for
BO15669.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31548-RA | 33..811 | 7..788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:36:02 Download gff for
BO15669.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31548-RA | 48..815 | 17..786 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:45:39 Download gff for
BO15669.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31548-RA | 33..811 | 7..788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:13:18 Download gff for
BO15669.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31548-RA | 48..815 | 17..786 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:13:18 Download gff for
BO15669.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5636036..5636805 | 17..786 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:36:02 Download gff for
BO15669.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1461758..1462527 | 17..786 | 99 | | Minus |
BO15669.pep Sequence
Translation from 16 to 802
> BO15669.pep
MNFAGKVVLITGASSGIGAATAIKFAKYGACLALNGRNVENLKKVAAECS
KVSQSQPALVVGDIAKEADTQRIWSETLQQYGKLDVLVNNAGIIETGTIE
TTSLEQYDRVMNTNLRAIYHLTMLATPELVKTKGNIVNVSSVNGIRSFPG
VLAYNISKMGVDQFTRCVALELAAKGVRVNCVNPGVTVTNLHARGGMDAE
TYKKFLEHSKTTHALGRPGDVKEVAAAIAFLASDEASFSTGVSLPVDGGR
HAMCPRASFLDH
BO15669.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31548-PA | 256 | CG31548-PA | 1..256 | 1..256 | 1295 | 100 | Plus |
CG31549-PB | 257 | CG31549-PB | 3..257 | 2..256 | 914 | 69 | Plus |
CG31549-PA | 257 | CG31549-PA | 3..257 | 2..256 | 914 | 69 | Plus |
CG12171-PA | 257 | CG12171-PA | 3..257 | 2..256 | 901 | 68.6 | Plus |
CG31546-PA | 264 | CG31546-PA | 9..264 | 1..256 | 716 | 57.6 | Plus |