BO15674.complete Sequence
982 bp (982 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633546
> BO15674.complete
GAAGTTATCAGTCGACATGGACTTCCTAATTGAAATAACATTACTGGTCA
TATTGGCAATTATACTGCTGAAGATCTATCATCGGGCGAAACGTAGTGCC
ATGGCGCCGTCGAACAATCGCCGGTACTTATCCTCGCAGGATATTACCAA
GAACATGACCCTGTACACCAGCACCAAGACCCAAGTTGAGGTGGATCCCA
AGACGCTGGCCTTCAAGAAGCCCACTGGCAACCCACTGGTTCTCATGATG
GCCTGGCTGATGGCCAAGCAGAAGCATCTGAAGAAGTATGCCCAGATCTA
CACTGAGATGGGATTCGATGTGGTGGTGGTGCACATTACGCCGTGGCAGC
TACTCTGGCCGGTCAAAGGATCCCAGGTGGTGGCCGCCGAGACTATTCGA
TTCCTGGAGAACAACAAGTCGTACGAACCCATTGTGATGCATGGCTTCTC
CGTGGGCGCCTACCAGCTGGGCGAGATCATGCTGCAGATGTCGCGCGACA
TGGATCGCTATGGTAGCATTCTGGACCGCTTCGTGTGCCAGGTGTGGGAC
AGCGCCGCCGACATCACCGAGATCCCGGTGGGCGTGCCCAAGTCGATCTT
CCCGAGGAACGAGCGAATGCAGAGCGCCCTGCGCAACTATACGCTGTACC
ACCTGAAGACATTCCACAACCAGGCCACCATCCACTACATGCGCTCCAGC
CAGATGTTCCACTCCACGCTGCTCAAGGCCCCGGCGCTGTTCTTCGTGTC
CGACAACGATCCCATCGGTCCGCCGTCCTCCAACCAGTCCGTTCGCGAGG
ACTGGGAGCGTGCGAACATCAAGGTTACCTTCAAGTGCTGGGAGCGGTCC
CAGCACGCCGCCCACTATATACGGCATCGCGAGGAGTACCTGCAGACGCT
GTTCCAGCATCTGGAGACCTGCGGTGTCTTGGAGGCCATCGGCGTGCCGA
AGCGCGCCAAGTTGGCAAGCTTTCTAGACCAT
BO15674.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:23:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)k09913-RD | 951 | CG3082-PD | 1..948 | 17..964 | 4740 | 100 | Plus |
| l(2)k09913-RF | 1167 | CG3082-PF | 294..1164 | 94..964 | 4355 | 100 | Plus |
| l(2)k09913-RE | 1170 | CG3082-PE | 297..1167 | 94..964 | 4355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:23:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)k09913-RD | 1451 | CG3082-RD | 176..1128 | 12..964 | 4750 | 99.9 | Plus |
| l(2)k09913-RF | 1694 | CG3082-RF | 501..1371 | 94..964 | 4355 | 100 | Plus |
| l(2)k09913-RE | 1590 | CG3082-RE | 397..1267 | 94..964 | 4355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:22:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23070961..23071552 | 373..964 | 2960 | 100 | Plus |
| 2R | 25286936 | 2R | 23070607..23070900 | 95..388 | 1425 | 99 | Plus |
| 2R | 25286936 | 2R | 23069580..23069662 | 12..94 | 400 | 98.8 | Plus |
Blast to na_te.dros performed 2014-11-28 00:23:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy6 | 7826 | gypsy6 GYPSY6 7826bp | 7000..7097 | 608..702 | 113 | 60.2 | Plus |
| G5 | 4856 | G5 G5_DM 4856bp | 2673..2730 | 196..253 | 110 | 65.5 | Plus |
BO15674.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:48:42 Download gff for
BO15674.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)k09913-RD | 1..951 | 17..965 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:03:31 Download gff for
BO15674.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)k09913-RD | 170..1128 | 5..964 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:23:32 Download gff for
BO15674.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)k09913-RD | 181..1128 | 17..966 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:48:42 Download gff for
BO15674.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)k09913-RD | 170..1128 | 5..964 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:52 Download gff for
BO15674.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)k09913-RD | 181..1128 | 17..966 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:52 Download gff for
BO15674.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23070607..23070888 | 95..376 | 100 | -> | Plus |
| 2R | 23069585..23069662 | 17..94 | 100 | -> | Plus |
| 2R | 23070965..23071552 | 377..966 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:23:32 Download gff for
BO15674.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18957108..18957185 | 17..94 | 100 | -> | Plus |
| arm_2R | 18958130..18958411 | 95..376 | 100 | -> | Plus |
| arm_2R | 18958488..18959075 | 377..966 | 99 | | Plus |
BO15674.pep Sequence
Translation from 16 to 982
> BO15674.pep
MDFLIEITLLVILAIILLKIYHRAKRSAMAPSNNRRYLSSQDITKNMTLY
TSTKTQVEVDPKTLAFKKPTGNPLVLMMAWLMAKQKHLKKYAQIYTEMGF
DVVVVHITPWQLLWPVKGSQVVAAETIRFLENNKSYEPIVMHGFSVGAYQ
LGEIMLQMSRDMDRYGSILDRFVCQVWDSAADITEIPVGVPKSIFPRNER
MQSALRNYTLYHLKTFHNQATIHYMRSSQMFHSTLLKAPALFFVSDNDPI
GPPSSNQSVREDWERANIKVTFKCWERSQHAAHYIRHREEYLQTLFQHLE
TCGVLEAIGVPKRAKLASFLDH
BO15674.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:51:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)k09913-PD | 316 | CG3082-PD | 1..316 | 1..316 | 1652 | 100 | Plus |
| l(2)k09913-PF | 388 | CG3082-PF | 96..388 | 24..316 | 1533 | 99.3 | Plus |
| l(2)k09913-PE | 389 | CG3082-PE | 97..389 | 24..316 | 1533 | 99.3 | Plus |
| l(2)k09913-PC | 389 | CG3082-PC | 97..389 | 24..316 | 1533 | 99.3 | Plus |
| l(2)k09913-PA | 389 | CG3082-PA | 97..389 | 24..316 | 1533 | 99.3 | Plus |
