Clone BO15676 Report

Search the DGRC for BO15676

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:156
Well:76
Vector:pDNR-Dual
Associated Gene/Transcriptglob1-RA
Protein status:BO15676.pep: validated full length
Sequenced Size:493

Clone Sequence Records

BO15676.3prime Sequence

491 bp (491 high quality bases) assembled on 2006-06-02

> BO15676.3prime
ATGGTCTAGAAAGCTTGCCTTGGCGTTGCCGTCGTCGTCGATCGCCTTGA
AGATGATTCCGTAGACATGGTCCACCAGCTTGGCCCACGTGGCCGCTTGA
CTCTCGTCCAGACTGCAGGCAGCTGTCAGCACATCCAGGATAACTCCTTT
CAGTTGGTTGTAAGACTCCTTGGAAACGGTCCGCGGAATGTGACTAACGG
CAATTTTGGTCCAGATCTCGTCCAGCTTCTCCAGATCGCCATCCTGGCCC
AGGACCTGGATGGACTCGTCAAAGACCCTTATGATTCTGCCGGCATGTGC
TCGGAAGCGAGCATTTCCACTTAGCTCCTCCAAAGGAACATCGCGGAAGG
GGAACTTCTCCAAGTTGGACGGAAAGCGGTTGAAAAACTGCGTCAGTATC
GCCGCTCCAGAATCTGTTGGTGTTGCCACGGGGATTTCCCAGGTCTTCTT
GATCAGTTGCACCTCATCGCTGTTCATGTCGACTGATAACT

BO15676.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:39:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG9734-PC 462 glob1-RC 1..459 477..19 2295 100 Minus
CG9734-PB 462 glob1-RB 1..459 477..19 2295 100 Minus
CG9734-PA 462 glob1-RA 1..459 477..19 2295 100 Minus
CG9734-PD 462 glob1-RD 1..459 477..19 2295 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:34:26
Subject Length Description Subject Range Query Range Score Percent Strand
glob1-RF 921 CG9734-RF 101..561 479..19 2305 100 Minus
glob1-RD 1143 CG9734-RD 323..783 479..19 2305 100 Minus
glob1-RA 1274 CG9734-RA 454..914 479..19 2305 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:34:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15897548..15897709 157..318 810 100 Plus
3R 32079331 3R 15897774..15897935 318..479 810 100 Plus
3R 32079331 3R 15897286..15897423 19..156 690 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:34:23 has no hits.

BO15676.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:52:47 Download gff for BO15676.3prime
Subject Subject Range Query Range Percent Splice Strand
glob1-PD 1..462 18..477 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:57:26 Download gff for BO15676.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9734-PD 1..462 18..477 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:12:19 Download gff for BO15676.3prime
Subject Subject Range Query Range Percent Splice Strand
glob1-RB 230..695 19..485 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:07 Download gff for BO15676.3prime
Subject Subject Range Query Range Percent Splice Strand
glob1-RA 449..914 19..485 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:07 Download gff for BO15676.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15897286..15897423 19..156 100 <- Plus
3R 15897548..15897709 157..318 100 <- Plus
3R 15897775..15897940 319..485 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:12:19 Download gff for BO15676.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11723008..11723145 19..156 100 <- Plus
arm_3R 11723270..11723431 157..318 100 <- Plus
arm_3R 11723497..11723662 319..485 98   Plus

BO15676.5prime Sequence

491 bp (491 high quality bases) assembled on 2006-05-30

> BO15676.5prime
GAAGTTATCAGTCGACATGAACAGCGATGAGGTGCAACTGATCAAGAAGA
CCTGGGAAATCCCCGTGGCAACACCAACAGATTCTGGAGCGGCGATACTG
ACGCAGTTTTTCAACCGCTTTCCGTCCAACTTGGAGAAGTTCCCCTTCCG
CGATGTTCCTTTGGAGGAGCTAAGTGGAAATGCTCGCTTCCGAGCACATG
CCGGCAGAATCATAAGGGTCTTTGACGAGTCCATCCAGGTCCTGGGCCAG
GATGGCGATCTGGAGAAGCTGGACGAGATCTGGACCAAAATTGCCGTTAG
TCACATTCCGCGGACCGTTTCCAAGGAGTCTTACAACCAACTGAAAGGAG
TTATCCTGGATGTGCTGACAGCTGCCTGCAGTCTGGACGAGAGTCAAGCG
GCCACGTGGGCCAAGCTGGTGGACCATGTCTACGGAATCATCTTCAAGGC
GATCGACGACGACGGCAACGCCAAGGCAAGCTTTCTAGACC

BO15676.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:39:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG9734-PC 462 glob1-RC 1..459 17..475 2295 100 Plus
CG9734-PB 462 glob1-RB 1..459 17..475 2295 100 Plus
CG9734-PA 462 glob1-RA 1..459 17..475 2295 100 Plus
CG9734-PD 462 glob1-RD 1..459 17..475 2295 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:44:46
Subject Length Description Subject Range Query Range Score Percent Strand
glob1-RF 921 CG9734-RF 101..561 15..475 2305 100 Plus
glob1-RD 1143 CG9734-RD 323..783 15..475 2305 100 Plus
glob1-RA 1274 CG9734-RA 454..914 15..475 2305 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:44:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15897548..15897709 337..176 810 100 Minus
3R 32079331 3R 15897774..15897935 176..15 810 100 Minus
3R 32079331 3R 15897286..15897423 475..338 690 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:44:43 has no hits.

BO15676.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:52:48 Download gff for BO15676.5prime
Subject Subject Range Query Range Percent Splice Strand
glob1-PD 1..462 17..476 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:57:27 Download gff for BO15676.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9734-PD 1..462 17..476 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:49:58 Download gff for BO15676.5prime
Subject Subject Range Query Range Percent Splice Strand
glob1-RB 230..695 9..475 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:50:03 Download gff for BO15676.5prime
Subject Subject Range Query Range Percent Splice Strand
glob1-RA 449..914 9..475 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:50:03 Download gff for BO15676.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15897286..15897423 338..475 100 <- Minus
3R 15897548..15897709 176..337 100 <- Minus
3R 15897775..15897940 9..175 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:49:58 Download gff for BO15676.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11723008..11723145 338..475 100 <- Minus
arm_3R 11723270..11723431 176..337 100 <- Minus
arm_3R 11723497..11723662 9..175 98   Minus

BO15676.complete Sequence

493 bp (493 high quality bases) assembled on 2006-08-24

GenBank Submission: FJ633548

> BO15676.complete
GAAGTTATCAGTCGACATGAACAGCGATGAGGTGCAACTGATCAAGAAGA
CCTGGGAAATCCCCGTGGCAACACCAACAGATTCTGGAGCGGCGATACTG
ACGCAGTTTTTCAACCGCTTTCCGTCCAACTTGGAGAAGTTCCCCTTCCG
CGATGTTCCTTTGGAGGAGCTAAGTGGAAATGCTCGCTTCCGAGCACATG
CCGGCAGAATCATAAGGGTCTTTGACGAGTCCATCCAGGTCCTGGGCCAG
GATGGCGATCTGGAGAAGCTGGACGAGATCTGGACCAAAATTGCCGTTAG
TCACATTCCGCGGACCGTTTCCAAGGAGTCTTACAACCAACTGAAAGGAG
TTATCCTGGATGTGCTGACAGCTGCCTGCAGTCTGGACGAGAGTCAAGCG
GCCACGTGGGCCAAGCTGGTGGACCATGTCTACGGAATCATCTTCAAGGC
GATCGACGACGACGGCAACGCCAAGGCAAGCTTTCTAGACCAT

BO15676.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:51:54
Subject Length Description Subject Range Query Range Score Percent Strand
glob1-RF 462 CG9734-PF 1..459 17..475 2295 100 Plus
glob1-RD 462 CG9734-PD 1..459 17..475 2295 100 Plus
glob1-RA 462 CG9734-PA 1..459 17..475 2295 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:51:55
Subject Length Description Subject Range Query Range Score Percent Strand
glob1-RF 921 CG9734-RF 101..561 15..475 2305 100 Plus
glob1-RD 1143 CG9734-RD 323..783 15..475 2305 100 Plus
glob1-RA 1274 CG9734-RA 454..914 15..475 2305 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:51:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15897548..15897709 337..176 810 100 Minus
3R 32079331 3R 15897774..15897935 176..15 810 100 Minus
3R 32079331 3R 15897286..15897423 475..338 690 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:51:54 has no hits.

BO15676.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:52:36 Download gff for BO15676.complete
Subject Subject Range Query Range Percent Splice Strand
glob1-RA 1..462 17..476 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:08:26 Download gff for BO15676.complete
Subject Subject Range Query Range Percent Splice Strand
glob1-RD 320..785 9..475 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:35 Download gff for BO15676.complete
Subject Subject Range Query Range Percent Splice Strand
glob1-RB 237..695 17..477 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:52:36 Download gff for BO15676.complete
Subject Subject Range Query Range Percent Splice Strand
glob1-RD 320..785 9..475 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:28:53 Download gff for BO15676.complete
Subject Subject Range Query Range Percent Splice Strand
glob1-RA 456..914 17..477 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:28:53 Download gff for BO15676.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15897284..15897423 338..477 98 <- Minus
3R 15897548..15897709 176..337 100 <- Minus
3R 15897775..15897933 17..175 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:35 Download gff for BO15676.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11723006..11723145 338..477 98 <- Minus
arm_3R 11723270..11723431 176..337 100 <- Minus
arm_3R 11723497..11723655 17..175 100   Minus

BO15676.pep Sequence

Translation from 16 to 493

> BO15676.pep
MNSDEVQLIKKTWEIPVATPTDSGAAILTQFFNRFPSNLEKFPFRDVPLE
ELSGNARFRAHAGRIIRVFDESIQVLGQDGDLEKLDEIWTKIAVSHIPRT
VSKESYNQLKGVILDVLTAACSLDESQAATWAKLVDHVYGIIFKAIDDDG
NAKASFLDH

BO15676.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:00:21
Subject Length Description Subject Range Query Range Score Percent Strand
glob1-PF 153 CG9734-PF 1..153 1..153 786 100 Plus
glob1-PD 153 CG9734-PD 1..153 1..153 786 100 Plus
glob1-PA 153 CG9734-PA 1..153 1..153 786 100 Plus
glob1-PB 153 CG9734-PB 1..153 1..153 786 100 Plus
glob1-PC 153 CG9734-PC 1..153 1..153 786 100 Plus