Clone Sequence Records
BO15680.3prime Sequence
422 bp (422 high quality bases) assembled on 2006-06-02
> BO15680.3prime
ATGGTCTAGAAAGCTTGCGACGGCCTTGTAGACGCGCACGCACTTAACGT
TGCCGATGGTGAGGGTGGTGATCAGCTCGTTGTCGGTGAACTCGCGGACG
ATGGTGGTGGGCTTGTCGCCCTTCTGCTCCTGCGTCAGCTTGTTGCCATC
CAGGGTGATGATGCTCTTGACGTTGCGACCGTCCAGGGTCTCCTCGTCGA
ACTCAACGCCCAGCTTGAAGCTGATGGCAGAGGTCTTGAAGGTGGAGGTG
GTAGTCAGGGTGTAGGTATCGCCCTCCAAGGTCACCTCCACTGTGGGGCT
CAGGCTGTTGCCCATCTTGCGCGTCACCAGACCGACGCCCAGCTCCTTCA
TGTACTCATCGAAGTTCTCGGACTTGTCCAGCTTGTACTTCTTGCCAACG
AAAGACATGTCGACTGATAACT
BO15680.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:39:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6783-PB | 393 | CG6783-RB | 1..390 | 408..19 | 1950 | 100 | Minus |
CG6783-PC | 474 | CG6783-RC | 1..342 | 408..67 | 1710 | 100 | Minus |
CG6783-PA | 354 | CG6783-RA | 31..351 | 339..19 | 1605 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:16:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fabp-RB | 723 | CG6783-RB | 68..457 | 408..19 | 1950 | 100 | Minus |
fabp-RC | 1660 | CG6783-RC | 68..409 | 408..67 | 1710 | 100 | Minus |
sea-RD | 1660 | CG6782-RD | 68..409 | 408..67 | 1710 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:15:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11564440..11564712 | 67..339 | 1365 | 100 | Plus |
3R | 32079331 | 3R | 11566917..11566987 | 338..408 | 355 | 100 | Plus |
3R | 32079331 | 3R | 11564324..11564371 | 19..66 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 07:16:02 has no hits.
BO15680.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:52:54 Download gff for
BO15680.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6783-PB | 1..393 | 15..408 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:57:34 Download gff for
BO15680.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6783-PB | 1..393 | 15..408 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:37:06 Download gff for
BO15680.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fabp-RB | 63..456 | 14..408 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:43:15 Download gff for
BO15680.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fabp-RB | 68..461 | 14..408 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:43:15 Download gff for
BO15680.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11564320..11564371 | 14..66 | 96 | <- | Plus |
3R | 11564440..11564711 | 67..338 | 100 | <- | Plus |
3R | 11566918..11566987 | 339..408 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:37:06 Download gff for
BO15680.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7390042..7390093 | 14..66 | 96 | <- | Plus |
arm_3R | 7390162..7390433 | 67..338 | 100 | <- | Plus |
arm_3R | 7392640..7392709 | 339..408 | 100 | | Plus |
BO15680.5prime Sequence
422 bp (422 high quality bases) assembled on 2006-05-30
> BO15680.5prime
GAAGTTATCAGTCGACATGTCTTTCGTTGGCAAGAAGTACAAGCTGGACA
AGTCCGAGAACTTCGATGAGTACATGAAGGAGCTGGGCGTCGGTCTGGTG
ACGCGCAAGATGGGCAACAGCCTGAGCCCCACAGTGGAGGTGACCTTGGA
GGGCGATACCTACACCCTGACTACCACCTCCACCTTCAAGACCTCTGCCA
TCAGCTTCAAGCTGGGCGTTGAGTTCGACGAGGAGACCCTGGACGGTCGC
AACGTCAAGAGCATCATCACCCTGGATGGCAACAAGCTGACGCAGGAGCA
GAAGGGCGACAAGCCCACCACCATCGTCCGCGAGTTCACCGACAACGAGC
TGATCACCACCCTCACCATCGGCAACGTTAAGTGCGTGCGCGTCTACAAG
GCCGTCGCAAGCTTTCTAGACC
BO15680.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:39:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6783-PB | 393 | CG6783-RB | 1..390 | 17..406 | 1950 | 100 | Plus |
CG6783-PC | 474 | CG6783-RC | 1..342 | 17..358 | 1710 | 100 | Plus |
CG6783-PA | 354 | CG6783-RA | 31..351 | 86..406 | 1605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 07:33:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fabp-RB | 723 | CG6783-RB | 68..457 | 17..406 | 1950 | 100 | Plus |
fabp-RC | 1660 | CG6783-RC | 68..409 | 17..358 | 1710 | 100 | Plus |
sea-RD | 1660 | CG6782-RD | 68..409 | 17..358 | 1710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 07:33:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11564440..11564712 | 358..86 | 1365 | 100 | Minus |
3R | 32079331 | 3R | 11566917..11566987 | 87..17 | 355 | 100 | Minus |
3R | 32079331 | 3R | 11564324..11564371 | 406..359 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 07:33:26 has no hits.
BO15680.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:52:55 Download gff for
BO15680.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6783-PB | 1..393 | 17..410 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:57:35 Download gff for
BO15680.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6783-PB | 1..393 | 17..410 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:43:57 Download gff for
BO15680.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fabp-RB | 63..456 | 17..411 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:13:27 Download gff for
BO15680.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fabp-RB | 68..461 | 17..411 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 09:13:27 Download gff for
BO15680.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11564320..11564371 | 359..411 | 96 | <- | Minus |
3R | 11564440..11564711 | 87..358 | 100 | <- | Minus |
3R | 11566918..11566987 | 17..86 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:43:57 Download gff for
BO15680.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7390042..7390093 | 359..411 | 96 | <- | Minus |
arm_3R | 7390162..7390433 | 87..358 | 100 | <- | Minus |
arm_3R | 7392640..7392709 | 17..86 | 100 | | Minus |
BO15680.complete Sequence
424 bp (424 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633549
> BO15680.complete
GAAGTTATCAGTCGACATGTCTTTCGTTGGCAAGAAGTACAAGCTGGACA
AGTCCGAGAACTTCGATGAGTACATGAAGGAGCTGGGCGTCGGTCTGGTG
ACGCGCAAGATGGGCAACAGCCTGAGCCCCACAGTGGAGGTGACCTTGGA
GGGCGATACCTACACCCTGACTACCACCTCCACCTTCAAGACCTCTGCCA
TCAGCTTCAAGCTGGGCGTTGAGTTCGACGAGGAGACCCTGGACGGTCGC
AACGTCAAGAGCATCATCACCCTGGATGGCAACAAGCTGACGCAGGAGCA
GAAGGGCGACAAGCCCACCACCATCGTCCGCGAGTTCACCGACAACGAGC
TGATCACCACCCTCACCATCGGCAACGTTAAGTGCGTGCGCGTCTACAAG
GCCGTCGCAAGCTTTCTAGACCAT
BO15680.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:07:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fabp-RB | 393 | CG6783-PB | 1..390 | 17..406 | 1950 | 100 | Plus |
fabp-RC | 474 | CG6783-PC | 1..342 | 17..358 | 1710 | 100 | Plus |
fabp-RA | 354 | CG6783-PA | 31..351 | 86..406 | 1605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:07:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fabp-RB | 723 | CG6783-RB | 68..457 | 17..406 | 1950 | 100 | Plus |
fabp-RC | 1660 | CG6783-RC | 68..409 | 17..358 | 1710 | 100 | Plus |
sea-RD | 1660 | CG6782-RD | 68..409 | 17..358 | 1710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:07:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11564440..11564712 | 358..86 | 1365 | 100 | Minus |
3R | 32079331 | 3R | 11566917..11566987 | 87..17 | 355 | 100 | Minus |
3R | 32079331 | 3R | 11564324..11564371 | 406..359 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:07:30 has no hits.
BO15680.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:52:37 Download gff for
BO15680.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6783-RB | 1..393 | 17..410 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:08:27 Download gff for
BO15680.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6783-RB | 63..456 | 17..411 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:07:00 Download gff for
BO15680.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fabp-RB | 63..452 | 17..408 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:52:38 Download gff for
BO15680.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6783-RB | 63..456 | 17..411 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:15:22 Download gff for
BO15680.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fabp-RB | 68..457 | 17..408 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:15:22 Download gff for
BO15680.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11564322..11564371 | 359..408 | 96 | <- | Minus |
3R | 11564440..11564711 | 87..358 | 100 | <- | Minus |
3R | 11566918..11566987 | 17..86 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:07:00 Download gff for
BO15680.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7390044..7390093 | 359..408 | 96 | <- | Minus |
arm_3R | 7390162..7390433 | 87..358 | 100 | <- | Minus |
arm_3R | 7392640..7392709 | 17..86 | 100 | | Minus |
BO15680.pep Sequence
Translation from 16 to 424
> BO15680.pep
MSFVGKKYKLDKSENFDEYMKELGVGLVTRKMGNSLSPTVEVTLEGDTYT
LTTTSTFKTSAISFKLGVEFDEETLDGRNVKSIITLDGNKLTQEQKGDKP
TTIVREFTDNELITTLTIGNVKCVRVYKAVASFLDH
BO15680.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:00:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fabp-PB | 130 | CG6783-PB | 1..130 | 1..130 | 656 | 100 | Plus |
fabp-PC | 157 | CG6783-PC | 1..116 | 1..116 | 576 | 98.3 | Plus |
fabp-PA | 117 | CG6783-PA | 11..117 | 24..130 | 536 | 100 | Plus |