Clone BO15680 Report

Search the DGRC for BO15680

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:156
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptCG6783-RB
Protein status:BO15680.pep: validated full length
Sequenced Size:424

Clone Sequence Records

BO15680.3prime Sequence

422 bp (422 high quality bases) assembled on 2006-06-02

> BO15680.3prime
ATGGTCTAGAAAGCTTGCGACGGCCTTGTAGACGCGCACGCACTTAACGT
TGCCGATGGTGAGGGTGGTGATCAGCTCGTTGTCGGTGAACTCGCGGACG
ATGGTGGTGGGCTTGTCGCCCTTCTGCTCCTGCGTCAGCTTGTTGCCATC
CAGGGTGATGATGCTCTTGACGTTGCGACCGTCCAGGGTCTCCTCGTCGA
ACTCAACGCCCAGCTTGAAGCTGATGGCAGAGGTCTTGAAGGTGGAGGTG
GTAGTCAGGGTGTAGGTATCGCCCTCCAAGGTCACCTCCACTGTGGGGCT
CAGGCTGTTGCCCATCTTGCGCGTCACCAGACCGACGCCCAGCTCCTTCA
TGTACTCATCGAAGTTCTCGGACTTGTCCAGCTTGTACTTCTTGCCAACG
AAAGACATGTCGACTGATAACT

BO15680.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:39:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG6783-PB 393 CG6783-RB 1..390 408..19 1950 100 Minus
CG6783-PC 474 CG6783-RC 1..342 408..67 1710 100 Minus
CG6783-PA 354 CG6783-RA 31..351 339..19 1605 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:16:07
Subject Length Description Subject Range Query Range Score Percent Strand
fabp-RB 723 CG6783-RB 68..457 408..19 1950 100 Minus
fabp-RC 1660 CG6783-RC 68..409 408..67 1710 100 Minus
sea-RD 1660 CG6782-RD 68..409 408..67 1710 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:15:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11564440..11564712 67..339 1365 100 Plus
3R 32079331 3R 11566917..11566987 338..408 355 100 Plus
3R 32079331 3R 11564324..11564371 19..66 240 100 Plus
Blast to na_te.dros performed on 2015-02-03 07:16:02 has no hits.

BO15680.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:52:54 Download gff for BO15680.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6783-PB 1..393 15..408 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:57:34 Download gff for BO15680.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6783-PB 1..393 15..408 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:37:06 Download gff for BO15680.3prime
Subject Subject Range Query Range Percent Splice Strand
fabp-RB 63..456 14..408 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:43:15 Download gff for BO15680.3prime
Subject Subject Range Query Range Percent Splice Strand
fabp-RB 68..461 14..408 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:43:15 Download gff for BO15680.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11564320..11564371 14..66 96 <- Plus
3R 11564440..11564711 67..338 100 <- Plus
3R 11566918..11566987 339..408 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:37:06 Download gff for BO15680.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7390042..7390093 14..66 96 <- Plus
arm_3R 7390162..7390433 67..338 100 <- Plus
arm_3R 7392640..7392709 339..408 100   Plus

BO15680.5prime Sequence

422 bp (422 high quality bases) assembled on 2006-05-30

> BO15680.5prime
GAAGTTATCAGTCGACATGTCTTTCGTTGGCAAGAAGTACAAGCTGGACA
AGTCCGAGAACTTCGATGAGTACATGAAGGAGCTGGGCGTCGGTCTGGTG
ACGCGCAAGATGGGCAACAGCCTGAGCCCCACAGTGGAGGTGACCTTGGA
GGGCGATACCTACACCCTGACTACCACCTCCACCTTCAAGACCTCTGCCA
TCAGCTTCAAGCTGGGCGTTGAGTTCGACGAGGAGACCCTGGACGGTCGC
AACGTCAAGAGCATCATCACCCTGGATGGCAACAAGCTGACGCAGGAGCA
GAAGGGCGACAAGCCCACCACCATCGTCCGCGAGTTCACCGACAACGAGC
TGATCACCACCCTCACCATCGGCAACGTTAAGTGCGTGCGCGTCTACAAG
GCCGTCGCAAGCTTTCTAGACC

BO15680.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:39:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG6783-PB 393 CG6783-RB 1..390 17..406 1950 100 Plus
CG6783-PC 474 CG6783-RC 1..342 17..358 1710 100 Plus
CG6783-PA 354 CG6783-RA 31..351 86..406 1605 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 07:33:30
Subject Length Description Subject Range Query Range Score Percent Strand
fabp-RB 723 CG6783-RB 68..457 17..406 1950 100 Plus
fabp-RC 1660 CG6783-RC 68..409 17..358 1710 100 Plus
sea-RD 1660 CG6782-RD 68..409 17..358 1710 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 07:33:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11564440..11564712 358..86 1365 100 Minus
3R 32079331 3R 11566917..11566987 87..17 355 100 Minus
3R 32079331 3R 11564324..11564371 406..359 240 100 Minus
Blast to na_te.dros performed on 2015-02-02 07:33:26 has no hits.

BO15680.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:52:55 Download gff for BO15680.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6783-PB 1..393 17..410 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:57:35 Download gff for BO15680.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6783-PB 1..393 17..410 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:43:57 Download gff for BO15680.5prime
Subject Subject Range Query Range Percent Splice Strand
fabp-RB 63..456 17..411 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:13:27 Download gff for BO15680.5prime
Subject Subject Range Query Range Percent Splice Strand
fabp-RB 68..461 17..411 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 09:13:27 Download gff for BO15680.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11564320..11564371 359..411 96 <- Minus
3R 11564440..11564711 87..358 100 <- Minus
3R 11566918..11566987 17..86 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:43:57 Download gff for BO15680.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7390042..7390093 359..411 96 <- Minus
arm_3R 7390162..7390433 87..358 100 <- Minus
arm_3R 7392640..7392709 17..86 100   Minus

BO15680.complete Sequence

424 bp (424 high quality bases) assembled on 2006-08-24

GenBank Submission: FJ633549

> BO15680.complete
GAAGTTATCAGTCGACATGTCTTTCGTTGGCAAGAAGTACAAGCTGGACA
AGTCCGAGAACTTCGATGAGTACATGAAGGAGCTGGGCGTCGGTCTGGTG
ACGCGCAAGATGGGCAACAGCCTGAGCCCCACAGTGGAGGTGACCTTGGA
GGGCGATACCTACACCCTGACTACCACCTCCACCTTCAAGACCTCTGCCA
TCAGCTTCAAGCTGGGCGTTGAGTTCGACGAGGAGACCCTGGACGGTCGC
AACGTCAAGAGCATCATCACCCTGGATGGCAACAAGCTGACGCAGGAGCA
GAAGGGCGACAAGCCCACCACCATCGTCCGCGAGTTCACCGACAACGAGC
TGATCACCACCCTCACCATCGGCAACGTTAAGTGCGTGCGCGTCTACAAG
GCCGTCGCAAGCTTTCTAGACCAT

BO15680.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:07:32
Subject Length Description Subject Range Query Range Score Percent Strand
fabp-RB 393 CG6783-PB 1..390 17..406 1950 100 Plus
fabp-RC 474 CG6783-PC 1..342 17..358 1710 100 Plus
fabp-RA 354 CG6783-PA 31..351 86..406 1605 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:07:33
Subject Length Description Subject Range Query Range Score Percent Strand
fabp-RB 723 CG6783-RB 68..457 17..406 1950 100 Plus
fabp-RC 1660 CG6783-RC 68..409 17..358 1710 100 Plus
sea-RD 1660 CG6782-RD 68..409 17..358 1710 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:07:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11564440..11564712 358..86 1365 100 Minus
3R 32079331 3R 11566917..11566987 87..17 355 100 Minus
3R 32079331 3R 11564324..11564371 406..359 240 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:07:30 has no hits.

BO15680.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:52:37 Download gff for BO15680.complete
Subject Subject Range Query Range Percent Splice Strand
CG6783-RB 1..393 17..410 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:08:27 Download gff for BO15680.complete
Subject Subject Range Query Range Percent Splice Strand
CG6783-RB 63..456 17..411 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:07:00 Download gff for BO15680.complete
Subject Subject Range Query Range Percent Splice Strand
fabp-RB 63..452 17..408 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:52:38 Download gff for BO15680.complete
Subject Subject Range Query Range Percent Splice Strand
CG6783-RB 63..456 17..411 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:15:22 Download gff for BO15680.complete
Subject Subject Range Query Range Percent Splice Strand
fabp-RB 68..457 17..408 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:15:22 Download gff for BO15680.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11564322..11564371 359..408 96 <- Minus
3R 11564440..11564711 87..358 100 <- Minus
3R 11566918..11566987 17..86 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:07:00 Download gff for BO15680.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7390044..7390093 359..408 96 <- Minus
arm_3R 7390162..7390433 87..358 100 <- Minus
arm_3R 7392640..7392709 17..86 100   Minus

BO15680.pep Sequence

Translation from 16 to 424

> BO15680.pep
MSFVGKKYKLDKSENFDEYMKELGVGLVTRKMGNSLSPTVEVTLEGDTYT
LTTTSTFKTSAISFKLGVEFDEETLDGRNVKSIITLDGNKLTQEQKGDKP
TTIVREFTDNELITTLTIGNVKCVRVYKAVASFLDH

BO15680.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:00:16
Subject Length Description Subject Range Query Range Score Percent Strand
fabp-PB 130 CG6783-PB 1..130 1..130 656 100 Plus
fabp-PC 157 CG6783-PC 1..116 1..116 576 98.3 Plus
fabp-PA 117 CG6783-PA 11..117 24..130 536 100 Plus