Clone Sequence Records
BO15683.3prime Sequence
506 bp (506 high quality bases) assembled on 2006-06-02
> BO15683.3prime
ATGGTCTAGAAAGCTTGCTTTTCCGTTGGCGAAGCTAAAGCCGTTGGGCA
GCAGTTGGAGAACGCTGGTGCAGAGCACCCTCAATGGAAGATTGGTCGGC
TTGGCGGCGTACAGGGGGATGTCCTTGCCGTTGACGAACTCCGAGAGGAA
CTGCCGGCAGACGCCACAAGGCGTGGTGAAGCCATTATCCTGCTGGGCCA
CCACTGCACAAGCCACAAAGTCGCGTTTGCCTTCACTGATGGCCTTGACG
GCTGCAGTGCGCTCTGCACAAATGCAGGTGGCATACGCCCCGTTTTCGAT
GTTGCAACCGGAGTATATGGTGCCATCGCTGGTCCTCAGGGCGGCTCCTA
CGGCAAAGTTACTGTACGGACAATAAGCCTGTTTTCTGGCTTCCGTGGCT
GCCAGGATGATCTCTTGAATCGAAGGATCCAGGCTCTGGAATTCCCGTAC
ATTGAGATCGTCTCTGGCACCATTGATAAACACCTGTGTCATGTCGACTG
ATAACT
BO15683.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:39:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8360-PA | 477 | CG8360-RA | 1..474 | 492..19 | 2370 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:13:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8360-RC | 787 | CG8360-RC | 175..649 | 493..19 | 2375 | 100 | Minus |
CG8360-RA | 714 | CG8360-RA | 102..576 | 493..19 | 2375 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:13:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8213778..8213997 | 238..19 | 1100 | 100 | Minus |
2L | 23513712 | 2L | 8213336..8213529 | 429..236 | 970 | 100 | Minus |
2L | 23513712 | 2L | 8213218..8213282 | 493..429 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:13:14 has no hits.
BO15683.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:52:56 Download gff for
BO15683.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8360-PA | 1..477 | 18..492 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:57:37 Download gff for
BO15683.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8360-PA | 1..477 | 18..492 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 22:58:36 Download gff for
BO15683.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8360-RA | 102..576 | 19..493 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:44:46 Download gff for
BO15683.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8360-RA | 102..576 | 19..493 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:44:46 Download gff for
BO15683.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8213781..8213997 | 19..235 | 100 | | Minus |
2L | 8213218..8213282 | 429..493 | 100 | -> | Minus |
2L | 8213337..8213529 | 236..428 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 22:58:36 Download gff for
BO15683.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8213218..8213282 | 429..493 | 100 | -> | Minus |
arm_2L | 8213337..8213529 | 236..428 | 100 | -> | Minus |
arm_2L | 8213781..8213997 | 19..235 | 100 | | Minus |
BO15683.5prime Sequence
506 bp (506 high quality bases) assembled on 2006-05-30
> BO15683.5prime
GAAGTTATCAGTCGACATGACACAGGTGTTTATCAATGGTGCCAGAGACG
ATCTCAATGTACGGGAATTCCAGAGCCTGGATCCTTCGATTCAAGAGATC
ATCCTGGCAGCCACGGAAGCCAGAAAACAGGCTTATTGTCCGTACAGTAA
CTTTGCCGTAGGAGCCGCCCTGAGGACCAGCGATGGCACCATATACTCCG
GTTGCAACATCGAAAACGGGGCGTATGCCACCTGCATTTGTGCAGAGCGC
ACTGCAGCCGTCAAGGCCATCAGTGAAGGCAAACGCGACTTTGTGGCTTG
TGCAGTGGTGGCCCAGCAGGATAATGGCTTCACCACGCCTTGTGGCGTCT
GCCGGCAGTTCCTCTCGGAGTTCGTCAACGGCAAGGACATCCCCCTGTAC
GCCGCCAAGCCGACCAATCTTCCATTGAGGGTGCTCTGCACCAGCGTTCT
CCAACTGCTGCCCAACGGCTTTAGCTTCGCCAACGGAAAAGCAAGCTTTC
TAGACC
BO15683.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:39:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8360-PA | 477 | CG8360-RA | 1..474 | 17..490 | 2370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:25:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8360-RC | 787 | CG8360-RC | 175..649 | 16..490 | 2375 | 100 | Plus |
CG8360-RA | 714 | CG8360-RA | 102..576 | 16..490 | 2375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:25:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8213778..8213997 | 271..490 | 1100 | 100 | Plus |
2L | 23513712 | 2L | 8213336..8213529 | 80..273 | 970 | 100 | Plus |
2L | 23513712 | 2L | 8213218..8213282 | 16..80 | 325 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:25:09 has no hits.
BO15683.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:52:57 Download gff for
BO15683.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8360-PA | 1..477 | 17..491 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:57:38 Download gff for
BO15683.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8360-PA | 1..477 | 17..491 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:32:49 Download gff for
BO15683.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8360-RA | 102..576 | 16..490 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:28:54 Download gff for
BO15683.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8360-RA | 102..576 | 16..490 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:28:54 Download gff for
BO15683.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8213218..8213282 | 16..80 | 100 | -> | Plus |
2L | 8213337..8213529 | 81..273 | 100 | -> | Plus |
2L | 8213781..8213997 | 274..490 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:32:49 Download gff for
BO15683.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8213218..8213282 | 16..80 | 100 | -> | Plus |
arm_2L | 8213337..8213529 | 81..273 | 100 | -> | Plus |
arm_2L | 8213781..8213997 | 274..490 | 100 | | Plus |
BO15683.complete Sequence
508 bp (508 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633550
> BO15683.complete
GAAGTTATCAGTCGACATGACACAGGTGTTTATCAATGGTGCCAGAGACG
ATCTCAATGTACGGGAATTCCAGAGCCTGGATCCTTCGATTCAAGAGATC
ATCCTGGCAGCCACGGAAGCCAGAAAACAGGCTTATTGTCCGTACAGTAA
CTTTGCCGTAGGAGCCGCCCTGAGGACCAGCGATGGCACCATATACTCCG
GTTGCAACATCGAAAACGGGGCGTATGCCACCTGCATTTGTGCAGAGCGC
ACTGCAGCCGTCAAGGCCATCAGTGAAGGCAAACGCGACTTTGTGGCTTG
TGCAGTGGTGGCCCAGCAGGATAATGGCTTCACCACGCCTTGTGGCGTCT
GCCGGCAGTTCCTCTCGGAGTTCGTCAACGGCAAGGACATCCCCCTGTAC
GCCGCCAAGCCGACCAATCTTCCATTGAGGGTGCTCTGCACCAGCGTTCT
CCAACTGCTGCCCAACGGCTTTAGCTTCGCCAACGGAAAAGCAAGCTTTC
TAGACCAT
BO15683.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:37:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8360-RC | 477 | CG8360-PC | 1..474 | 17..490 | 2370 | 100 | Plus |
CG8360-RA | 477 | CG8360-PA | 1..474 | 17..490 | 2370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:37:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8360-RC | 787 | CG8360-RC | 175..649 | 16..490 | 2375 | 100 | Plus |
CG8360-RA | 714 | CG8360-RA | 102..576 | 16..490 | 2375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:37:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8213778..8213997 | 271..490 | 1100 | 100 | Plus |
2L | 23513712 | 2L | 8213336..8213529 | 80..273 | 970 | 100 | Plus |
2L | 23513712 | 2L | 8213218..8213282 | 16..80 | 325 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:37:35 has no hits.
BO15683.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:52:39 Download gff for
BO15683.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8360-RA | 1..477 | 17..491 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:08:29 Download gff for
BO15683.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8360-RA | 40..514 | 16..490 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:52:31 Download gff for
BO15683.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8360-RA | 103..572 | 17..486 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:52:39 Download gff for
BO15683.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8360-RA | 40..514 | 16..490 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:22:47 Download gff for
BO15683.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8360-RA | 103..572 | 17..486 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:22:47 Download gff for
BO15683.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8213337..8213529 | 81..273 | 100 | -> | Plus |
2L | 8213781..8213993 | 274..486 | 100 | | Plus |
2L | 8213219..8213282 | 17..80 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:52:31 Download gff for
BO15683.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8213781..8213993 | 274..486 | 100 | | Plus |
arm_2L | 8213219..8213282 | 17..80 | 100 | -> | Plus |
arm_2L | 8213337..8213529 | 81..273 | 100 | -> | Plus |
BO15683.pep Sequence
Translation from 16 to 508
> BO15683.pep
MTQVFINGARDDLNVREFQSLDPSIQEIILAATEARKQAYCPYSNFAVGA
ALRTSDGTIYSGCNIENGAYATCICAERTAAVKAISEGKRDFVACAVVAQ
QDNGFTTPCGVCRQFLSEFVNGKDIPLYAAKPTNLPLRVLCTSVLQLLPN
GFSFANGKASFLDH
BO15683.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:00:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8360-PC | 158 | CG8360-PC | 1..158 | 1..158 | 822 | 100 | Plus |
CG8360-PA | 158 | CG8360-PA | 1..158 | 1..158 | 822 | 100 | Plus |
CG8353-PB | 170 | CG8353-PB | 1..165 | 1..152 | 379 | 49.4 | Plus |
CG8353-PA | 170 | CG8353-PA | 1..165 | 1..152 | 379 | 49.4 | Plus |
CG8349-PA | 264 | CG8349-PA | 124..261 | 26..153 | 317 | 50.4 | Plus |