Clone Sequence Records
BO15685.3prime Sequence
746 bp (746 high quality bases) assembled on 2006-06-02
> BO15685.3prime
ATGGTCTAGAAAGCTTGCCAGCAGCTTTTCAATGTCCTTGGCGATGTCCA
TGGGATCGGTGGTCGGGGCATATCGGTTGATGGGCACGCCCTCCTTGTTC
ACCAGAAACTTGGTGAAGTTCCACTTGATTCCGCTGCCCAGGGTGCCGGT
CTGCTTGGCCTTTAGGTATTTGTACAGCGGCGCCGCATTGTCTCCATTCA
CATCGACCTTGGCGAACACCTCGCCGATGTCAGCCTTGGAGTCGCGCAGG
TGGCACACCATGGCCTCTCCATCGGCCTCCGGCATCTGGGACCCAAACTG
ATTGCACGGGAAGTTGAGGATCACCAGGCCGCGCTCGCCGTACTTCTCCT
TTAGATCCGTCAGCTTCTCGTAGTTGTTCTTGGTCAGGCCGCACTTGGAG
GCGATGTTCACCACCAGGACCACCTTGCCCTTGTACTTTTCCAGGGAAAC
ATCGTTGCCATGGGTATCCTTCACGGTGAACTCGTAGATCGAGGCGGCGT
TCTTGTAATCTCCGTTAGCAGACATGTCGATGGCAGCTGCTGTGGAGTGC
TGGGCGGCTGAGGAGATGGCGTTCATGGGCGTGGCCGCACAGCTCACGGG
AAGCATGATGGTGCAGAGGCGAAGGCACTGCCTCTGACCGCGACTCAGCT
CGAGGAAGGGGCCAGGGGTCCGCCTCATCGAGTAGCACCTGAGGGCCTGG
CGGGAAATGTTCTGAAACTGCCTGAGACTCATGTCGACTGATAACT
BO15685.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:39:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12013-PD | 717 | PHGPx-RD | 1..714 | 732..19 | 3545 | 99.8 | Minus |
CG12013-PC | 597 | PHGPx-RC | 82..594 | 531..19 | 2565 | 100 | Minus |
CG12013-PB | 510 | PHGPx-RB | 1..507 | 525..19 | 2535 | 100 | Minus |
CG12013-PA | 510 | PHGPx-RA | 1..507 | 525..19 | 2535 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:05:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PHGPx-RD | 1014 | CG12013-RD | 114..827 | 732..19 | 3555 | 99.9 | Minus |
PHGPx-RA | 803 | CG12013-RA | 104..616 | 531..19 | 2565 | 100 | Minus |
PHGPx-RC | 1148 | CG12013-RC | 449..961 | 531..19 | 2565 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:05:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3327860..3328185 | 531..206 | 1630 | 100 | Minus |
3L | 28110227 | 3L | 3327353..3327553 | 732..532 | 990 | 99.5 | Minus |
3L | 28110227 | 3L | 3328249..3328439 | 209..19 | 955 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 12:05:03 has no hits.
BO15685.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:52:58 Download gff for
BO15685.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PHGPx-PD | 1..717 | 18..732 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:57:39 Download gff for
BO15685.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12013-PD | 1..717 | 18..732 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:49:33 Download gff for
BO15685.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PHGPx-RD | 112..827 | 19..735 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:24:32 Download gff for
BO15685.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PHGPx-RD | 112..827 | 19..735 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:24:32 Download gff for
BO15685.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3328251..3328439 | 19..207 | 100 | | Minus |
3L | 3327351..3327553 | 532..735 | 99 | -> | Minus |
3L | 3327860..3328183 | 208..531 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:49:33 Download gff for
BO15685.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3327351..3327553 | 532..735 | 99 | -> | Minus |
arm_3L | 3327860..3328183 | 208..531 | 100 | -> | Minus |
arm_3L | 3328251..3328439 | 19..207 | 100 | | Minus |
BO15685.5prime Sequence
746 bp (746 high quality bases) assembled on 2006-05-30
> BO15685.5prime
GAAGTTATCAGTCGACATGAGTCTCAGGCAGTTTCAGAACATTTCCCGCC
AGGCCCTCAGGTGCTACTCGATGAGGCGGACCCCTGGCCCCTTCCTCGAG
CTGAGTCGCGGTCAGAGGCAGTGCCTTCGCCTCTGCACCATCATGCTTCC
CGTGAGCTGTGCGGCCACGCCCATGAACGCCATCTCCTCAGCCGCCCAGC
ACTCCACAGCAGCTGCCATCGACATGTCTGCTAACGGAGATTACAAGAAC
GCCGCCTCGATCTACGAGTTCACCGTGAAGGATACCCATGGCAACGATGT
TTCCCTGGAAAAGTACAAGGGCAAGGTGGTCCTGGTGGTGAACATCGCCT
CCAAGTGCGGCCTGACCAAGAACAACTACGAGAAGCTGACGGATCTAAAG
GAGAAGTACGGCGAGCGCGGCCTGGTGATCCTCAACTTCCCGTGCAATCA
GTTTGGGTCCCAGATGCCGGAGGCCGATGGAGAGGCCATGGTGTGCCACC
TGCGCGACTCCAAGGCTGACATCGGCGAGGTGTTCGCCAAGGTCGATGTG
AATGGAGACAATGCGGCGCCGCTGTACAAATACCTAAAGGCCAAGCAGAC
CGGCACCCTGGGCAGCGGAATCAAGTGGAACTTCACCAAGTTTCTGGTGA
ACAAGGAGGGCGTGCCCATCAACCGATATGCCCCGACCACCGATCCCATG
GACATCGCCAAGGACATTGAANAGCTGCTGGCAAGCTTTCTAGACC
BO15685.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:39:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12013-PD | 717 | PHGPx-RD | 1..714 | 17..730 | 3526 | 99.7 | Plus |
CG12013-PC | 597 | PHGPx-RC | 82..594 | 218..730 | 2546 | 99.8 | Plus |
CG12013-PB | 510 | PHGPx-RB | 1..507 | 224..730 | 2516 | 99.8 | Plus |
CG12013-PA | 510 | PHGPx-RA | 1..507 | 224..730 | 2516 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:33:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PHGPx-RD | 1014 | CG12013-RD | 114..827 | 17..730 | 3544 | 99.7 | Plus |
PHGPx-RA | 803 | CG12013-RA | 104..616 | 218..730 | 2554 | 99.8 | Plus |
PHGPx-RC | 1148 | CG12013-RC | 449..961 | 218..730 | 2554 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:33:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3327860..3328185 | 218..543 | 1630 | 100 | Plus |
3L | 28110227 | 3L | 3327353..3327553 | 17..217 | 990 | 99.5 | Plus |
3L | 28110227 | 3L | 3328249..3328439 | 540..730 | 944 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:33:47 has no hits.
BO15685.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:52:59 Download gff for
BO15685.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PHGPx-PD | 1..717 | 17..731 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:57:41 Download gff for
BO15685.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12013-PD | 1..717 | 17..731 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:00:31 Download gff for
BO15685.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PHGPx-RD | 112..827 | 14..730 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:04:52 Download gff for
BO15685.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PHGPx-RD | 112..827 | 14..730 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:04:52 Download gff for
BO15685.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3327860..3328183 | 218..541 | 100 | -> | Plus |
3L | 3328251..3328439 | 542..730 | 99 | | Plus |
3L | 3327351..3327553 | 14..217 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:00:31 Download gff for
BO15685.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3327351..3327553 | 14..217 | 99 | -> | Plus |
arm_3L | 3327860..3328183 | 218..541 | 100 | -> | Plus |
arm_3L | 3328251..3328439 | 542..730 | 99 | | Plus |
BO15685.complete Sequence
748 bp (748 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633551
> BO15685.complete
GAAGTTATCAGTCGACATGAGTCTCAGGCAGTTTCAGAACATTTCCCGCC
AGGCCCTCAGGTGCTACTCGATGAGGCGGACCCCTGGCCCCTTCCTCGAG
CTGAGTCGCGGTCAGAGGCAGTGCCTTCGCCTCTGCACCATCATGCTTCC
CGTGAGCTGTGCGGCCACGCCCATGAACGCCATCTCCTCAGCCGCCCAGC
ACTCCACAGCAGCTGCCATCGACATGTCTGCTAACGGAGATTACAAGAAC
GCCGCCTCGATCTACGAGTTCACCGTGAAGGATACCCATGGCAACGATGT
TTCCCTGGAAAAGTACAAGGGCAAGGTGGTCCTGGTGGTGAACATCGCCT
CCAAGTGCGGCCTGACCAAGAACAACTACGAGAAGCTGACGGATCTAAAG
GAGAAGTACGGCGAGCGCGGCCTGGTGATCCTCAACTTCCCGTGCAATCA
GTTTGGGTCCCAGATGCCGGAGGCCGATGGAGAGGCCATGGTGTGCCACC
TGCGCGACTCCAAGGCTGACATCGGCGAGGTGTTCGCCAAGGTCGATGTG
AATGGAGACAATGCGGCGCCGCTGTACAAATACCTAAAGGCCAAGCAGAC
CGGCACCCTGGGCAGCGGAATCAAGTGGAACTTCACCAAGTTTCTGGTGA
ACAAGGAGGGCGTGCCCATCAACCGATATGCCCCGACCACCGATCCCATG
GACATCGCCAAGGACATTGAAAAGCTGCTGGCAAGCTTTCTAGACCAT
BO15685.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:57:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PHGPx-RD | 717 | CG12013-PD | 1..714 | 17..730 | 3555 | 99.9 | Plus |
PHGPx-RC | 597 | CG12013-PC | 82..594 | 218..730 | 2565 | 100 | Plus |
PHGPx-RA | 510 | CG12013-PA | 1..507 | 224..730 | 2535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:57:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PHGPx-RD | 1014 | CG12013-RD | 114..827 | 17..730 | 3555 | 99.9 | Plus |
PHGPx-RA | 803 | CG12013-RA | 104..616 | 218..730 | 2565 | 100 | Plus |
PHGPx-RC | 1148 | CG12013-RC | 449..961 | 218..730 | 2565 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:57:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3327860..3328185 | 218..543 | 1630 | 100 | Plus |
3L | 28110227 | 3L | 3327353..3327553 | 17..217 | 990 | 99.5 | Plus |
3L | 28110227 | 3L | 3328249..3328439 | 540..730 | 955 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:57:22 has no hits.
BO15685.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:52:40 Download gff for
BO15685.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PHGPx-RD | 1..717 | 17..731 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:08:31 Download gff for
BO15685.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PHGPx-RD | 80..795 | 14..730 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:36:36 Download gff for
BO15685.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PHGPx-RD | 114..827 | 17..732 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:52:40 Download gff for
BO15685.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PHGPx-RD | 80..795 | 14..730 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:30:41 Download gff for
BO15685.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PHGPx-RD | 114..827 | 17..732 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:30:41 Download gff for
BO15685.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3327860..3328183 | 218..541 | 100 | -> | Plus |
3L | 3328251..3328439 | 542..732 | 98 | | Plus |
3L | 3327353..3327553 | 17..217 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:36:36 Download gff for
BO15685.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3327353..3327553 | 17..217 | 99 | -> | Plus |
arm_3L | 3327860..3328183 | 218..541 | 100 | -> | Plus |
arm_3L | 3328251..3328439 | 542..732 | 98 | | Plus |
BO15685.pep Sequence
Translation from 16 to 748
> BO15685.pep
MSLRQFQNISRQALRCYSMRRTPGPFLELSRGQRQCLRLCTIMLPVSCAA
TPMNAISSAAQHSTAAAIDMSANGDYKNAASIYEFTVKDTHGNDVSLEKY
KGKVVLVVNIASKCGLTKNNYEKLTDLKEKYGERGLVILNFPCNQFGSQM
PEADGEAMVCHLRDSKADIGEVFAKVDVNGDNAAPLYKYLKAKQTGTLGS
GIKWNFTKFLVNKEGVPINRYAPTTDPMDIAKDIEKLLASFLDH
BO15685.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:00:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PHGPx-PD | 238 | CG12013-PD | 1..238 | 1..238 | 1232 | 99.6 | Plus |
PHGPx-PC | 198 | CG12013-PC | 28..198 | 68..238 | 897 | 100 | Plus |
PHGPx-PA | 169 | CG12013-PA | 1..169 | 70..238 | 887 | 100 | Plus |
CG15116-PA | 193 | CG15116-PA | 33..191 | 75..238 | 403 | 50.6 | Plus |