Clone Sequence Records
BO15691.3prime Sequence
800 bp (800 high quality bases) assembled on 2006-06-02
> BO15691.3prime
ATGGTCTAGAAAGCTTGCATCCTTGCGCAGCTTATCCAGGCGCGCCTGAA
GATCCGCATCGGCATCGGACATGGGCGATGAGGCACCACTGCCACCGGGA
GCTCCCGGACCACCAGCGCCGCCACCACTAGCTCCACCTCCGCCGGCGGC
TCCACCGCCGCCAACGCCACCAGCGGCCACAGCCTGTGCTTTCTGAGCGC
CAGCGCCGCCGGCTATGGAAAGGGAACCGGAGGCGGAAGGAAGGTCTCCC
AGCTGTTCGCCCAATTGCAGACCCAGTTCGTCCAGCACCTGGGACACAAC
AGCATCCGTCTCCTCCTCGTCGCCCTCGTCCTCCATGGCGTCATCGATGG
CATCGTTGATCATCTCCTCCTTCATGTCCATCATTTCCGACTGTTTCTCG
AAGTCCTGCAGGATCTTCTGGATTTGCGGGAGATTCAGCTGGCGGTTCAT
GTTCTGCATGGCCTTCGTGACACCTTTCATGGCCTGTGCCATTGTGTTCT
GCGACTTGAGCGTCTGAATTTTGAGGGACACCGCCTGGATGTTTGCCTTC
ATCAGCATGAACTTCTTGGCATACCGCCGCGTGCGCACCAGATCCTTGGC
CATGATCTTCACGGCATCCATTTGACCCTCCTTGGCCATCTTCTTGATAT
CCGCGATAATCTTCTTCTCCTGCTGCTCCATTTTCATCCGCTCGCGGTCC
AGATCTCGCATCGCTTTGTTGAGCGCCCGCTGATTCTTACGCAGCATCTC
ATCGGGGCTGATCTTCTTGCCGAATAGCCAGTCCATGTCGACTGATAACT
BO15691.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:39:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14542-PA | 771 | CG14542-RA | 1..768 | 786..19 | 3840 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:25:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vps2-RA | 1248 | CG14542-RA | 95..864 | 788..19 | 3850 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:25:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26053288..26053744 | 475..19 | 2285 | 100 | Minus |
3R | 32079331 | 3R | 26052915..26053231 | 788..472 | 1585 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:25:57 has no hits.
BO15691.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:53:03 Download gff for
BO15691.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14542-PA | 1..771 | 16..786 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:57:47 Download gff for
BO15691.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14542-PA | 1..771 | 16..786 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:48:04 Download gff for
BO15691.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vps2-RA | 86..869 | 13..797 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:52:05 Download gff for
BO15691.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps2-RA | 86..869 | 13..797 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:52:05 Download gff for
BO15691.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26052906..26053229 | 474..797 | 98 | -> | Minus |
3R | 26053290..26053742 | 21..473 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:48:04 Download gff for
BO15691.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21878628..21878951 | 474..797 | 98 | -> | Minus |
arm_3R | 21879012..21879464 | 21..473 | 100 | -> | Minus |
BO15691.5prime Sequence
800 bp (800 high quality bases) assembled on 2006-05-30
> BO15691.5prime
GAAGTTATCAGTCGACATGGACTGGCTATTCGGCAAGAAGATCAGCCCCG
ATGAGATGCTGCGTAAGAATCAGCGGGCGCTCAACAAAGCGATGCGAGAT
CTGGACCGCGAGCGGATGAAAATGGAGCAGCAGGAGAAGAAGATTATCGC
GGATATCAAGAAGATGGCCAAGGAGGGTCAAATGGATGCCGTGAAGATCA
TGGCCAAGGATCTGGTGCGCACGCGGCGGTATGCCAAGAAGTTCATGCTG
ATGAAGGCAAACATCCAGGCGGTGTCCCTCAAAATTCAGACGCTCAAGTC
GCAGAACACAATGGCACAGGCCATGAAAGGTGTCACGAAGGCCATGCAGA
ACATGAACCGCCAGCTGAATCTCCCGCAAATCCAGAAGATCCTGCAGGAC
TTCGAGAAACAGTCGGAAATGATGGACATGAAGGAGGAGATGATCAACGA
TGCCATCGATGACGCCATGGAGGACGAGGGCGACGAGGAGGAGACGGATG
CTGTTGTGTCCCAGGTGCTGGACGAACTGGGTCTGCAATTGGGCGAACAG
CTGGGAGACCTTCCTTCCGCCTCCGGTTCCCTTTCCATAGCCGGCGGCGC
TGGCGCTCAGAAAGCACAGGCTGTGGCCGCTGGTGGCGTTGGCGGCGGTG
GAGCCGCCGGCGGAGGTGGAGCTAGTGGTGGCGGCGCTGGTGGTCCGGGA
GCTCCCGGTGGCAGTGGTGCCTCATCGCCCATGTCCGATGCCGATGCGGA
TCTTCAGGCGCGCCTGGATAAGCTGCGCAAGGATGCAAGCTTTCTAGACC
BO15691.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:39:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14542-PA | 771 | CG14542-RA | 1..768 | 17..784 | 3840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:12:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vps2-RA | 1248 | CG14542-RA | 95..864 | 15..784 | 3850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:12:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26053288..26053744 | 328..784 | 2285 | 100 | Plus |
3R | 32079331 | 3R | 26052915..26053231 | 15..331 | 1585 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 09:12:27 has no hits.
BO15691.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:53:05 Download gff for
BO15691.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14542-PA | 1..771 | 17..787 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:57:49 Download gff for
BO15691.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14542-PA | 1..771 | 17..787 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:28:23 Download gff for
BO15691.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vps2-RA | 86..869 | 6..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:47:48 Download gff for
BO15691.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps2-RA | 86..869 | 6..790 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 13:47:48 Download gff for
BO15691.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26052906..26053229 | 6..329 | 98 | -> | Plus |
3R | 26053290..26053742 | 330..782 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:28:23 Download gff for
BO15691.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21878628..21878951 | 6..329 | 98 | -> | Plus |
arm_3R | 21879012..21879464 | 330..782 | 100 | -> | Plus |
BO15691.complete Sequence
802 bp (802 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633553
> BO15691.complete
GAAGTTATCAGTCGACATGGACTGGCTATTCGGCAAGAAGATCAGCCCCG
ATGAGATGCTGCGTAAGAATCAGCGGGCGCTCAACAAAGCGATGCGAGAT
CTGGACCGCGAGCGGATGAAAATGGAGCAGCAGGAGAAGAAGATTATCGC
GGATATCAAGAAGATGGCCAAGGAGGGTCAAATGGATGCCGTGAAGATCA
TGGCCAAGGATCTGGTGCGCACGCGGCGGTATGCCAAGAAGTTCATGCTG
ATGAAGGCAAACATCCAGGCGGTGTCCCTCAAAATTCAGACGCTCAAGTC
GCAGAACACAATGGCACAGGCCATGAAAGGTGTCACGAAGGCCATGCAGA
ACATGAACCGCCAGCTGAATCTCCCGCAAATCCAGAAGATCCTGCAGGAC
TTCGAGAAACAGTCGGAAATGATGGACATGAAGGAGGAGATGATCAACGA
TGCCATCGATGACGCCATGGAGGACGAGGGCGACGAGGAGGAGACGGATG
CTGTTGTGTCCCAGGTGCTGGACGAACTGGGTCTGCAATTGGGCGAACAG
CTGGGAGACCTTCCTTCCGCCTCCGGTTCCCTTTCCATAGCCGGCGGCGC
TGGCGCTCAGAAAGCACAGGCTGTGGCCGCTGGTGGCGTTGGCGGCGGTG
GAGCCGCCGGCGGAGGTGGAGCTAGTGGTGGCGGCGCTGGTGGTCCGGGA
GCTCCCGGTGGCAGTGGTGCCTCATCGCCCATGTCCGATGCCGATGCGGA
TCTTCAGGCGCGCCTGGATAAGCTGCGCAAGGATGCAAGCTTTCTAGACC
AT
BO15691.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:56:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vps2-RA | 771 | CG14542-PA | 1..768 | 17..784 | 3840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vps2-RA | 1248 | CG14542-RA | 95..864 | 15..784 | 3850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26053288..26053744 | 328..784 | 2285 | 100 | Plus |
3R | 32079331 | 3R | 26052915..26053231 | 15..331 | 1585 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:56:11 has no hits.
BO15691.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:52:42 Download gff for
BO15691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14542-RA | 1..771 | 17..787 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:08:35 Download gff for
BO15691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14542-RA | 82..865 | 6..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:04 Download gff for
BO15691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vps2-RA | 97..864 | 17..786 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:52:42 Download gff for
BO15691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14542-RA | 82..865 | 6..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:56:11 Download gff for
BO15691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps2-RA | 97..864 | 17..786 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:56:11 Download gff for
BO15691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26052917..26053229 | 17..329 | 100 | -> | Plus |
3R | 26053290..26053744 | 330..786 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:04 Download gff for
BO15691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21878639..21878951 | 17..329 | 100 | -> | Plus |
arm_3R | 21879012..21879466 | 330..786 | 99 | | Plus |
BO15691.pep Sequence
Translation from 16 to 802
> BO15691.pep
MDWLFGKKISPDEMLRKNQRALNKAMRDLDRERMKMEQQEKKIIADIKKM
AKEGQMDAVKIMAKDLVRTRRYAKKFMLMKANIQAVSLKIQTLKSQNTMA
QAMKGVTKAMQNMNRQLNLPQIQKILQDFEKQSEMMDMKEEMINDAIDDA
MEDEGDEEETDAVVSQVLDELGLQLGEQLGDLPSASGSLSIAGGAGAQKA
QAVAAGGVGGGGAAGGGGASGGGAGGPGAPGGSGASSPMSDADADLQARL
DKLRKDASFLDH
BO15691.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:59:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vps2-PA | 256 | CG14542-PA | 1..256 | 1..256 | 1275 | 100 | Plus |
CHMP2B-PA | 212 | CG4618-PA | 5..200 | 4..199 | 349 | 34.7 | Plus |
Chmp1-PB | 203 | CG4108-PB | 6..189 | 15..201 | 237 | 28.3 | Plus |
Chmp1-PA | 203 | CG4108-PA | 6..189 | 15..201 | 237 | 28.3 | Plus |
Vps24-PA | 223 | CG9779-PA | 3..181 | 4..183 | 195 | 25.8 | Plus |