Clone BO15691 Report

Search the DGRC for BO15691

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:156
Well:91
Vector:pDNR-Dual
Associated Gene/Transcriptvps2-RA
Protein status:BO15691.pep: validated full length
Sequenced Size:802

Clone Sequence Records

BO15691.3prime Sequence

800 bp (800 high quality bases) assembled on 2006-06-02

> BO15691.3prime
ATGGTCTAGAAAGCTTGCATCCTTGCGCAGCTTATCCAGGCGCGCCTGAA
GATCCGCATCGGCATCGGACATGGGCGATGAGGCACCACTGCCACCGGGA
GCTCCCGGACCACCAGCGCCGCCACCACTAGCTCCACCTCCGCCGGCGGC
TCCACCGCCGCCAACGCCACCAGCGGCCACAGCCTGTGCTTTCTGAGCGC
CAGCGCCGCCGGCTATGGAAAGGGAACCGGAGGCGGAAGGAAGGTCTCCC
AGCTGTTCGCCCAATTGCAGACCCAGTTCGTCCAGCACCTGGGACACAAC
AGCATCCGTCTCCTCCTCGTCGCCCTCGTCCTCCATGGCGTCATCGATGG
CATCGTTGATCATCTCCTCCTTCATGTCCATCATTTCCGACTGTTTCTCG
AAGTCCTGCAGGATCTTCTGGATTTGCGGGAGATTCAGCTGGCGGTTCAT
GTTCTGCATGGCCTTCGTGACACCTTTCATGGCCTGTGCCATTGTGTTCT
GCGACTTGAGCGTCTGAATTTTGAGGGACACCGCCTGGATGTTTGCCTTC
ATCAGCATGAACTTCTTGGCATACCGCCGCGTGCGCACCAGATCCTTGGC
CATGATCTTCACGGCATCCATTTGACCCTCCTTGGCCATCTTCTTGATAT
CCGCGATAATCTTCTTCTCCTGCTGCTCCATTTTCATCCGCTCGCGGTCC
AGATCTCGCATCGCTTTGTTGAGCGCCCGCTGATTCTTACGCAGCATCTC
ATCGGGGCTGATCTTCTTGCCGAATAGCCAGTCCATGTCGACTGATAACT

BO15691.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:39:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG14542-PA 771 CG14542-RA 1..768 786..19 3840 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:25:58
Subject Length Description Subject Range Query Range Score Percent Strand
Vps2-RA 1248 CG14542-RA 95..864 788..19 3850 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:25:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26053288..26053744 475..19 2285 100 Minus
3R 32079331 3R 26052915..26053231 788..472 1585 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:25:57 has no hits.

BO15691.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:53:03 Download gff for BO15691.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14542-PA 1..771 16..786 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:57:47 Download gff for BO15691.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14542-PA 1..771 16..786 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:48:04 Download gff for BO15691.3prime
Subject Subject Range Query Range Percent Splice Strand
vps2-RA 86..869 13..797 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:52:05 Download gff for BO15691.3prime
Subject Subject Range Query Range Percent Splice Strand
Vps2-RA 86..869 13..797 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:52:05 Download gff for BO15691.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 26052906..26053229 474..797 98 -> Minus
3R 26053290..26053742 21..473 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:48:04 Download gff for BO15691.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21878628..21878951 474..797 98 -> Minus
arm_3R 21879012..21879464 21..473 100 -> Minus

BO15691.5prime Sequence

800 bp (800 high quality bases) assembled on 2006-05-30

> BO15691.5prime
GAAGTTATCAGTCGACATGGACTGGCTATTCGGCAAGAAGATCAGCCCCG
ATGAGATGCTGCGTAAGAATCAGCGGGCGCTCAACAAAGCGATGCGAGAT
CTGGACCGCGAGCGGATGAAAATGGAGCAGCAGGAGAAGAAGATTATCGC
GGATATCAAGAAGATGGCCAAGGAGGGTCAAATGGATGCCGTGAAGATCA
TGGCCAAGGATCTGGTGCGCACGCGGCGGTATGCCAAGAAGTTCATGCTG
ATGAAGGCAAACATCCAGGCGGTGTCCCTCAAAATTCAGACGCTCAAGTC
GCAGAACACAATGGCACAGGCCATGAAAGGTGTCACGAAGGCCATGCAGA
ACATGAACCGCCAGCTGAATCTCCCGCAAATCCAGAAGATCCTGCAGGAC
TTCGAGAAACAGTCGGAAATGATGGACATGAAGGAGGAGATGATCAACGA
TGCCATCGATGACGCCATGGAGGACGAGGGCGACGAGGAGGAGACGGATG
CTGTTGTGTCCCAGGTGCTGGACGAACTGGGTCTGCAATTGGGCGAACAG
CTGGGAGACCTTCCTTCCGCCTCCGGTTCCCTTTCCATAGCCGGCGGCGC
TGGCGCTCAGAAAGCACAGGCTGTGGCCGCTGGTGGCGTTGGCGGCGGTG
GAGCCGCCGGCGGAGGTGGAGCTAGTGGTGGCGGCGCTGGTGGTCCGGGA
GCTCCCGGTGGCAGTGGTGCCTCATCGCCCATGTCCGATGCCGATGCGGA
TCTTCAGGCGCGCCTGGATAAGCTGCGCAAGGATGCAAGCTTTCTAGACC

BO15691.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:39:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG14542-PA 771 CG14542-RA 1..768 17..784 3840 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:12:29
Subject Length Description Subject Range Query Range Score Percent Strand
Vps2-RA 1248 CG14542-RA 95..864 15..784 3850 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:12:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26053288..26053744 328..784 2285 100 Plus
3R 32079331 3R 26052915..26053231 15..331 1585 100 Plus
Blast to na_te.dros performed on 2015-02-13 09:12:27 has no hits.

BO15691.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:53:05 Download gff for BO15691.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14542-PA 1..771 17..787 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:57:49 Download gff for BO15691.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14542-PA 1..771 17..787 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:28:23 Download gff for BO15691.5prime
Subject Subject Range Query Range Percent Splice Strand
vps2-RA 86..869 6..790 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:47:48 Download gff for BO15691.5prime
Subject Subject Range Query Range Percent Splice Strand
Vps2-RA 86..869 6..790 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 13:47:48 Download gff for BO15691.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 26052906..26053229 6..329 98 -> Plus
3R 26053290..26053742 330..782 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:28:23 Download gff for BO15691.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21878628..21878951 6..329 98 -> Plus
arm_3R 21879012..21879464 330..782 100 -> Plus

BO15691.complete Sequence

802 bp (802 high quality bases) assembled on 2006-08-24

GenBank Submission: FJ633553

> BO15691.complete
GAAGTTATCAGTCGACATGGACTGGCTATTCGGCAAGAAGATCAGCCCCG
ATGAGATGCTGCGTAAGAATCAGCGGGCGCTCAACAAAGCGATGCGAGAT
CTGGACCGCGAGCGGATGAAAATGGAGCAGCAGGAGAAGAAGATTATCGC
GGATATCAAGAAGATGGCCAAGGAGGGTCAAATGGATGCCGTGAAGATCA
TGGCCAAGGATCTGGTGCGCACGCGGCGGTATGCCAAGAAGTTCATGCTG
ATGAAGGCAAACATCCAGGCGGTGTCCCTCAAAATTCAGACGCTCAAGTC
GCAGAACACAATGGCACAGGCCATGAAAGGTGTCACGAAGGCCATGCAGA
ACATGAACCGCCAGCTGAATCTCCCGCAAATCCAGAAGATCCTGCAGGAC
TTCGAGAAACAGTCGGAAATGATGGACATGAAGGAGGAGATGATCAACGA
TGCCATCGATGACGCCATGGAGGACGAGGGCGACGAGGAGGAGACGGATG
CTGTTGTGTCCCAGGTGCTGGACGAACTGGGTCTGCAATTGGGCGAACAG
CTGGGAGACCTTCCTTCCGCCTCCGGTTCCCTTTCCATAGCCGGCGGCGC
TGGCGCTCAGAAAGCACAGGCTGTGGCCGCTGGTGGCGTTGGCGGCGGTG
GAGCCGCCGGCGGAGGTGGAGCTAGTGGTGGCGGCGCTGGTGGTCCGGGA
GCTCCCGGTGGCAGTGGTGCCTCATCGCCCATGTCCGATGCCGATGCGGA
TCTTCAGGCGCGCCTGGATAAGCTGCGCAAGGATGCAAGCTTTCTAGACC
AT

BO15691.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:56:12
Subject Length Description Subject Range Query Range Score Percent Strand
Vps2-RA 771 CG14542-PA 1..768 17..784 3840 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:13
Subject Length Description Subject Range Query Range Score Percent Strand
Vps2-RA 1248 CG14542-RA 95..864 15..784 3850 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26053288..26053744 328..784 2285 100 Plus
3R 32079331 3R 26052915..26053231 15..331 1585 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:56:11 has no hits.

BO15691.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:52:42 Download gff for BO15691.complete
Subject Subject Range Query Range Percent Splice Strand
CG14542-RA 1..771 17..787 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:08:35 Download gff for BO15691.complete
Subject Subject Range Query Range Percent Splice Strand
CG14542-RA 82..865 6..790 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:04 Download gff for BO15691.complete
Subject Subject Range Query Range Percent Splice Strand
vps2-RA 97..864 17..786 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:52:42 Download gff for BO15691.complete
Subject Subject Range Query Range Percent Splice Strand
CG14542-RA 82..865 6..790 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:56:11 Download gff for BO15691.complete
Subject Subject Range Query Range Percent Splice Strand
Vps2-RA 97..864 17..786 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:56:11 Download gff for BO15691.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26052917..26053229 17..329 100 -> Plus
3R 26053290..26053744 330..786 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:04 Download gff for BO15691.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21878639..21878951 17..329 100 -> Plus
arm_3R 21879012..21879466 330..786 99   Plus

BO15691.pep Sequence

Translation from 16 to 802

> BO15691.pep
MDWLFGKKISPDEMLRKNQRALNKAMRDLDRERMKMEQQEKKIIADIKKM
AKEGQMDAVKIMAKDLVRTRRYAKKFMLMKANIQAVSLKIQTLKSQNTMA
QAMKGVTKAMQNMNRQLNLPQIQKILQDFEKQSEMMDMKEEMINDAIDDA
MEDEGDEEETDAVVSQVLDELGLQLGEQLGDLPSASGSLSIAGGAGAQKA
QAVAAGGVGGGGAAGGGGASGGGAGGPGAPGGSGASSPMSDADADLQARL
DKLRKDASFLDH

BO15691.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:59:55
Subject Length Description Subject Range Query Range Score Percent Strand
Vps2-PA 256 CG14542-PA 1..256 1..256 1275 100 Plus
CHMP2B-PA 212 CG4618-PA 5..200 4..199 349 34.7 Plus
Chmp1-PB 203 CG4108-PB 6..189 15..201 237 28.3 Plus
Chmp1-PA 203 CG4108-PA 6..189 15..201 237 28.3 Plus
Vps24-PA 223 CG9779-PA 3..181 4..183 195 25.8 Plus