Clone BO15713 Report

Search the DGRC for BO15713

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:157
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptHph-RB
Protein status:BO15713.pep: full length peptide match
Sequenced Size:868

Clone Sequence Records

BO15713.3prime Sequence

822 bp (740 high quality bases) assembled on 2006-05-30

> BO15713.3prime
ATGGTCTAGAAAGCTTGCCGTGCATATTTCGCTGCTGGTGGCGCAGGAAT
TACTCGACACATTGGCGTTCAGCGCTCCCGTTCCCGTGGACATGCTAACC
GGCAGACTGGATGCGGATGAAGCTGGTGCTGCGGGTGGTGTGGTGGTGGA
GTCTGGTTCAGCCTGTTGGGCTTGGGCTTGAGCTGCCAGATTGTTCGTCT
TGCTGTTTTCCAGCTTGGCCCTAATGAGGGCCTCCTCGCGTTCCTTGGCA
TCGAAGTACCAGACGGTGATGGCATAGCGGGTACGGTGAGCGGGCTGCAC
TTCGTGGGGATTCCGAATGTCAGACCAGAAGAATATCAGGCGATCAAACT
TGGGCTCAATATCCGCCACTGTGGTTCCGGGTGTTGGCCGAATTCGCAGA
ATGCCGCCACTTTCCCGCGCATCCCAGTTGATATTCAGGTAGTATATGGC
CGTTATAACGCGGCCATCCTTTTGGGGATTGTCCACATGCATGACGTAGT
GAGTTCCCGATCCCGGATAACAAGCGACCATTGCCCTCGTGCGCTCCCTG
ATGTGGTAGTTGCCCAAGATGCCATTATCCTTCATCGTGTTAACACGATA
CACCACAGAGTCAATCTGATTGGTCAGATACCAGACATTGCTGCAGCCCG
GCTCATTGCCACCAACCCACTTGATCTTATCGCCTCGGATCTTGTCACCG
CGCACCGCGGGTGCATCGGGCGTCTGGTTGGTCACCACTTGGCCATCCTG
GAAGGCTCCTGCGTTGTACATGCTTCGAACCTCGTTGAGGATCTTCAGGC
CCGTCTCCATCCCCAGGAAGTC

BO15713.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:40:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG31543-PB 837 Hph-RB 31..834 822..19 4020 100 Minus
CG31543-PC 1437 Hph-RC 631..1434 822..19 4020 100 Minus
CG31543-PA 978 Hph-RA 172..975 822..19 4020 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:07:12
Subject Length Description Subject Range Query Range Score Percent Strand
Hph-RD 3171 CG44015-RD 1159..1962 822..19 4020 100 Minus
Hph-RC 2496 CG44015-RC 1159..1962 822..19 4020 100 Minus
Hph-RA 2337 CG44015-RA 773..1576 822..19 4020 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:07:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5267461..5267837 395..19 1885 100 Minus
3R 32079331 3R 5266826..5267032 822..616 1035 100 Minus
3R 32079331 3R 5267262..5267402 535..395 705 100 Minus
3R 32079331 3R 5267117..5267202 619..534 430 100 Minus
Blast to na_te.dros performed on 2015-02-03 07:07:08 has no hits.

BO15713.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:53:16 Download gff for BO15713.3prime
Subject Subject Range Query Range Percent Splice Strand
Hph-PA 172..978 15..822 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:58:04 Download gff for BO15713.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31543-PA 172..978 15..822 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:35:34 Download gff for BO15713.3prime
Subject Subject Range Query Range Percent Splice Strand
Hph-RB 333..1139 15..822 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:42:12 Download gff for BO15713.3prime
Subject Subject Range Query Range Percent Splice Strand
Hph-RA 773..1579 15..822 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:42:12 Download gff for BO15713.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5267462..5267836 20..394 100 -> Minus
3R 5266826..5267032 616..822 100 -> Minus
3R 5267121..5267201 535..615 100 -> Minus
3R 5267263..5267402 395..534 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:35:34 Download gff for BO15713.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1092548..1092754 616..822 100 -> Minus
arm_3R 1092843..1092923 535..615 100 -> Minus
arm_3R 1092985..1093124 395..534 100 -> Minus
arm_3R 1093184..1093558 20..394 100 -> Minus

BO15713.5prime Sequence

867 bp (770 high quality bases) assembled on 2006-05-30

> BO15713.5prime
GAAGTTATCAGTCGACATGAACCAGTATGGTCTGTCCGTGGTGGACGACT
TCCTGGGGATGGAGACGGGCCTGAAGATCCTCAACGAGGTTCGAAGCATG
TACAACGCAGGAGCCTTCCAGGATGGCCAAGTGGTGACCAACCAGACGCC
CGATGCACCCGCGGTGCGCGGTGACAAGATCCGAGGCGATAAGATCAAGT
GGGTTGGTGGCAATGAGCCGGGCTGCAGCAATGTCTGGTATCTGACCAAT
CAGATTGACTCTGTGGTGTATCGTGTTAACACGATGAAGGATAATGGCAT
CTTGGGCAACTACCACATCAGGGAGCGCACGAGGGCAATGGTCGCTTGTT
ATCCGGGATCGGGAACTCACTACGTCATGCATGTGGACAATCCCCAAAAG
GATGGCCGCGTTATAACGGCCATATACTACCTGAATATCAACTGGGATGC
GCGGGAAAGTGGCGGCATTCTGCGAATTCGGCCAACACCCGGAACCACAG
TGGCGGATATTGAGCCCAAGTTTGATCGCCTGATATTCTTCTGGTCTGAC
ATTCGGAATCCCCACGAAGTGCAGCCCGCTCACCGTACCCGCTATGCCAT
CACCGTCTGGTACTTCGATGCCAAGGAACGCGAGGAGGCCCTCATTAGGG
CCAAGCTGGAAAACAGCAAGACGAACAATCTGGCAGCTCAAGCCCAAGCC
CAACAGGCTGAACCAGACTCCACCACCACACCACCCGCAGCACCAGCTTC
ATCCGCATCCAGTCTGCCGGTTAGCATGTCCACGGGAACGGGAGCGCTGA
ACGCCAATGTGTCGAGTAATTCCTGCGCCACCAGCAGCGAAATATGCACG
GCAAGCTTTCTAGACCA

BO15713.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:40:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG31543-PC 1437 Hph-RC 597..1434 13..850 4190 100 Plus
CG31543-PA 978 Hph-RA 138..975 13..850 4190 100 Plus
CG31543-PB 837 Hph-RB 1..834 17..850 4170 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:35:28
Subject Length Description Subject Range Query Range Score Percent Strand
Hph-RD 3171 CG44015-RD 1120..1962 7..850 4195 99.9 Plus
Hph-RC 2496 CG44015-RC 1120..1962 7..850 4195 99.9 Plus
Hph-RA 2337 CG44015-RA 734..1576 7..850 4195 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:35:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5267461..5267837 474..850 1885 100 Plus
3R 32079331 3R 5266792..5267032 13..253 1205 100 Plus
3R 32079331 3R 5267262..5267402 334..474 705 100 Plus
3R 32079331 3R 5267117..5267202 250..335 430 100 Plus
Blast to na_te.dros performed on 2015-02-11 10:35:26 has no hits.

BO15713.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:53:17 Download gff for BO15713.5prime
Subject Subject Range Query Range Percent Splice Strand
Hph-PA 125..978 1..854 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:58:06 Download gff for BO15713.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31543-PA 125..978 1..854 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:09:46 Download gff for BO15713.5prime
Subject Subject Range Query Range Percent Splice Strand
Hph-RB 286..1139 1..854 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:14:43 Download gff for BO15713.5prime
Subject Subject Range Query Range Percent Splice Strand
Hph-RA 726..1579 1..854 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:14:43 Download gff for BO15713.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5266779..5267032 1..253 98 -> Plus
3R 5267121..5267201 254..334 100 -> Plus
3R 5267263..5267402 335..474 100 -> Plus
3R 5267462..5267836 475..849 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:09:46 Download gff for BO15713.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1092501..1092754 1..253 98 -> Plus
arm_3R 1092843..1092923 254..334 100 -> Plus
arm_3R 1092985..1093124 335..474 100 -> Plus
arm_3R 1093184..1093558 475..849 100 -> Plus

BO15713.complete Sequence

868 bp (868 high quality bases) assembled on 2006-08-24

GenBank Submission: FJ633557

> BO15713.complete
GAAGTTATCAGTCGACATGAACCAGTATGGTCTGTCCGTGGTGGACGACT
TCCTGGGGATGGAGACGGGCCTGAAGATCCTCAACGAGGTTCGAAGCATG
TACAACGCAGGAGCCTTCCAGGATGGCCAAGTGGTGACCAACCAGACGCC
CGATGCACCCGCGGTGCGCGGTGACAAGATCCGAGGCGATAAGATCAAGT
GGGTTGGTGGCAATGAGCCGGGCTGCAGCAATGTCTGGTATCTGACCAAT
CAGATTGACTCTGTGGTGTATCGTGTTAACACGATGAAGGATAATGGCAT
CTTGGGCAACTACCACATCAGGGAGCGCACGAGGGCAATGGTCGCTTGTT
ATCCGGGATCGGGAACTCACTACGTCATGCATGTGGACAATCCCCAAAAG
GATGGCCGCGTTATAACGGCCATATACTACCTGAATATCAACTGGGATGC
GCGGGAAAGTGGCGGCATTCTGCGAATTCGGCCAACACCCGGAACCACAG
TGGCGGATATTGAGCCCAAGTTTGATCGCCTGATATTCTTCTGGTCTGAC
ATTCGGAATCCCCACGAAGTGCAGCCCGCTCACCGTACCCGCTATGCCAT
CACCGTCTGGTACTTCGATGCCAAGGAACGCGAGGAGGCCCTCATTAGGG
CCAAGCTGGAAAACAGCAAGACGAACAATCTGGCAGCTCAAGCCCAAGCC
CAACAGGCTGAACCAGACTCCACCACCACACCACCCGCAGCACCAGCTTC
ATCCGCATCCAGTCTGCCGGTTAGCATGTCCACGGGAACGGGAGCGCTGA
ACGCCAATGTGTCGAGTAATTCCTGCGCCACCAGCAGCGAAATATGCACG
GCAAGCTTTCTAGACCAT

BO15713.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:01:33
Subject Length Description Subject Range Query Range Score Percent Strand
Hph-RD 1437 CG44015-PD 597..1434 13..850 4190 100 Plus
Hph-RC 1437 CG44015-PC 597..1434 13..850 4190 100 Plus
Hph-RA 978 CG44015-PA 138..975 13..850 4190 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:01:34
Subject Length Description Subject Range Query Range Score Percent Strand
Hph-RD 3171 CG44015-RD 1125..1962 13..850 4190 100 Plus
Hph-RC 2496 CG44015-RC 1125..1962 13..850 4190 100 Plus
Hph-RA 2337 CG44015-RA 739..1576 13..850 4190 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:01:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5267461..5267837 474..850 1885 100 Plus
3R 32079331 3R 5266792..5267032 13..253 1205 100 Plus
3R 32079331 3R 5267262..5267402 334..474 705 100 Plus
3R 32079331 3R 5267117..5267202 250..335 430 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:01:31 has no hits.

BO15713.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:52:26 Download gff for BO15713.complete
Subject Subject Range Query Range Percent Splice Strand
Hph-RA 125..978 1..854 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:08:12 Download gff for BO15713.complete
Subject Subject Range Query Range Percent Splice Strand
Hph-RB 286..1139 1..854 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:43:51 Download gff for BO15713.complete
Subject Subject Range Query Range Percent Splice Strand
Hph-RB 303..1136 17..852 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:52:27 Download gff for BO15713.complete
Subject Subject Range Query Range Percent Splice Strand
Hph-RB 286..1139 1..854 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:12:59 Download gff for BO15713.complete
Subject Subject Range Query Range Percent Splice Strand
Hph-RA 743..1576 17..852 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:12:59 Download gff for BO15713.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5266796..5267032 17..253 100 -> Plus
3R 5267121..5267201 254..334 100 -> Plus
3R 5267263..5267402 335..474 100 -> Plus
3R 5267462..5267837 475..852 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:43:51 Download gff for BO15713.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1092518..1092754 17..253 100 -> Plus
arm_3R 1092843..1092923 254..334 100 -> Plus
arm_3R 1092985..1093124 335..474 100 -> Plus
arm_3R 1093184..1093559 475..852 99   Plus

BO15713.pep Sequence

Translation from 16 to 868

> BO15713.pep
MNQYGLSVVDDFLGMETGLKILNEVRSMYNAGAFQDGQVVTNQTPDAPAV
RGDKIRGDKIKWVGGNEPGCSNVWYLTNQIDSVVYRVNTMKDNGILGNYH
IRERTRAMVACYPGSGTHYVMHVDNPQKDGRVITAIYYLNINWDARESGG
ILRIRPTPGTTVADIEPKFDRLIFFWSDIRNPHEVQPAHRTRYAITVWYF
DAKEREEALIRAKLENSKTNNLAAQAQAQQAEPDSTTTPPAAPASSASSL
PVSMSTGTGALNANVSSNSCATSSEICTASFLDH

BO15713.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:34:37
Subject Length Description Subject Range Query Range Score Percent Strand
Hph-PB 278 CG44015-PB 1..278 1..278 1468 100 Plus
Hph-PA 325 CG44015-PA 48..325 1..278 1468 100 Plus
Hph-PD 478 CG44015-PD 201..478 1..278 1468 100 Plus
Hph-PC 478 CG44015-PC 201..478 1..278 1468 100 Plus