Clone Sequence Records
BO15713.3prime Sequence
822 bp (740 high quality bases) assembled on 2006-05-30
> BO15713.3prime
ATGGTCTAGAAAGCTTGCCGTGCATATTTCGCTGCTGGTGGCGCAGGAAT
TACTCGACACATTGGCGTTCAGCGCTCCCGTTCCCGTGGACATGCTAACC
GGCAGACTGGATGCGGATGAAGCTGGTGCTGCGGGTGGTGTGGTGGTGGA
GTCTGGTTCAGCCTGTTGGGCTTGGGCTTGAGCTGCCAGATTGTTCGTCT
TGCTGTTTTCCAGCTTGGCCCTAATGAGGGCCTCCTCGCGTTCCTTGGCA
TCGAAGTACCAGACGGTGATGGCATAGCGGGTACGGTGAGCGGGCTGCAC
TTCGTGGGGATTCCGAATGTCAGACCAGAAGAATATCAGGCGATCAAACT
TGGGCTCAATATCCGCCACTGTGGTTCCGGGTGTTGGCCGAATTCGCAGA
ATGCCGCCACTTTCCCGCGCATCCCAGTTGATATTCAGGTAGTATATGGC
CGTTATAACGCGGCCATCCTTTTGGGGATTGTCCACATGCATGACGTAGT
GAGTTCCCGATCCCGGATAACAAGCGACCATTGCCCTCGTGCGCTCCCTG
ATGTGGTAGTTGCCCAAGATGCCATTATCCTTCATCGTGTTAACACGATA
CACCACAGAGTCAATCTGATTGGTCAGATACCAGACATTGCTGCAGCCCG
GCTCATTGCCACCAACCCACTTGATCTTATCGCCTCGGATCTTGTCACCG
CGCACCGCGGGTGCATCGGGCGTCTGGTTGGTCACCACTTGGCCATCCTG
GAAGGCTCCTGCGTTGTACATGCTTCGAACCTCGTTGAGGATCTTCAGGC
CCGTCTCCATCCCCAGGAAGTC
BO15713.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:40:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31543-PB | 837 | Hph-RB | 31..834 | 822..19 | 4020 | 100 | Minus |
CG31543-PC | 1437 | Hph-RC | 631..1434 | 822..19 | 4020 | 100 | Minus |
CG31543-PA | 978 | Hph-RA | 172..975 | 822..19 | 4020 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:07:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hph-RD | 3171 | CG44015-RD | 1159..1962 | 822..19 | 4020 | 100 | Minus |
Hph-RC | 2496 | CG44015-RC | 1159..1962 | 822..19 | 4020 | 100 | Minus |
Hph-RA | 2337 | CG44015-RA | 773..1576 | 822..19 | 4020 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:07:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5267461..5267837 | 395..19 | 1885 | 100 | Minus |
3R | 32079331 | 3R | 5266826..5267032 | 822..616 | 1035 | 100 | Minus |
3R | 32079331 | 3R | 5267262..5267402 | 535..395 | 705 | 100 | Minus |
3R | 32079331 | 3R | 5267117..5267202 | 619..534 | 430 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 07:07:08 has no hits.
BO15713.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:53:16 Download gff for
BO15713.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hph-PA | 172..978 | 15..822 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:58:04 Download gff for
BO15713.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31543-PA | 172..978 | 15..822 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:35:34 Download gff for
BO15713.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hph-RB | 333..1139 | 15..822 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:42:12 Download gff for
BO15713.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hph-RA | 773..1579 | 15..822 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:42:12 Download gff for
BO15713.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5267462..5267836 | 20..394 | 100 | -> | Minus |
3R | 5266826..5267032 | 616..822 | 100 | -> | Minus |
3R | 5267121..5267201 | 535..615 | 100 | -> | Minus |
3R | 5267263..5267402 | 395..534 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:35:34 Download gff for
BO15713.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1092548..1092754 | 616..822 | 100 | -> | Minus |
arm_3R | 1092843..1092923 | 535..615 | 100 | -> | Minus |
arm_3R | 1092985..1093124 | 395..534 | 100 | -> | Minus |
arm_3R | 1093184..1093558 | 20..394 | 100 | -> | Minus |
BO15713.5prime Sequence
867 bp (770 high quality bases) assembled on 2006-05-30
> BO15713.5prime
GAAGTTATCAGTCGACATGAACCAGTATGGTCTGTCCGTGGTGGACGACT
TCCTGGGGATGGAGACGGGCCTGAAGATCCTCAACGAGGTTCGAAGCATG
TACAACGCAGGAGCCTTCCAGGATGGCCAAGTGGTGACCAACCAGACGCC
CGATGCACCCGCGGTGCGCGGTGACAAGATCCGAGGCGATAAGATCAAGT
GGGTTGGTGGCAATGAGCCGGGCTGCAGCAATGTCTGGTATCTGACCAAT
CAGATTGACTCTGTGGTGTATCGTGTTAACACGATGAAGGATAATGGCAT
CTTGGGCAACTACCACATCAGGGAGCGCACGAGGGCAATGGTCGCTTGTT
ATCCGGGATCGGGAACTCACTACGTCATGCATGTGGACAATCCCCAAAAG
GATGGCCGCGTTATAACGGCCATATACTACCTGAATATCAACTGGGATGC
GCGGGAAAGTGGCGGCATTCTGCGAATTCGGCCAACACCCGGAACCACAG
TGGCGGATATTGAGCCCAAGTTTGATCGCCTGATATTCTTCTGGTCTGAC
ATTCGGAATCCCCACGAAGTGCAGCCCGCTCACCGTACCCGCTATGCCAT
CACCGTCTGGTACTTCGATGCCAAGGAACGCGAGGAGGCCCTCATTAGGG
CCAAGCTGGAAAACAGCAAGACGAACAATCTGGCAGCTCAAGCCCAAGCC
CAACAGGCTGAACCAGACTCCACCACCACACCACCCGCAGCACCAGCTTC
ATCCGCATCCAGTCTGCCGGTTAGCATGTCCACGGGAACGGGAGCGCTGA
ACGCCAATGTGTCGAGTAATTCCTGCGCCACCAGCAGCGAAATATGCACG
GCAAGCTTTCTAGACCA
BO15713.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:40:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31543-PC | 1437 | Hph-RC | 597..1434 | 13..850 | 4190 | 100 | Plus |
CG31543-PA | 978 | Hph-RA | 138..975 | 13..850 | 4190 | 100 | Plus |
CG31543-PB | 837 | Hph-RB | 1..834 | 17..850 | 4170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:35:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hph-RD | 3171 | CG44015-RD | 1120..1962 | 7..850 | 4195 | 99.9 | Plus |
Hph-RC | 2496 | CG44015-RC | 1120..1962 | 7..850 | 4195 | 99.9 | Plus |
Hph-RA | 2337 | CG44015-RA | 734..1576 | 7..850 | 4195 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:35:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5267461..5267837 | 474..850 | 1885 | 100 | Plus |
3R | 32079331 | 3R | 5266792..5267032 | 13..253 | 1205 | 100 | Plus |
3R | 32079331 | 3R | 5267262..5267402 | 334..474 | 705 | 100 | Plus |
3R | 32079331 | 3R | 5267117..5267202 | 250..335 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:35:26 has no hits.
BO15713.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:53:17 Download gff for
BO15713.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hph-PA | 125..978 | 1..854 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:58:06 Download gff for
BO15713.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31543-PA | 125..978 | 1..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:09:46 Download gff for
BO15713.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hph-RB | 286..1139 | 1..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:14:43 Download gff for
BO15713.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hph-RA | 726..1579 | 1..854 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:14:43 Download gff for
BO15713.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5266779..5267032 | 1..253 | 98 | -> | Plus |
3R | 5267121..5267201 | 254..334 | 100 | -> | Plus |
3R | 5267263..5267402 | 335..474 | 100 | -> | Plus |
3R | 5267462..5267836 | 475..849 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:09:46 Download gff for
BO15713.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1092501..1092754 | 1..253 | 98 | -> | Plus |
arm_3R | 1092843..1092923 | 254..334 | 100 | -> | Plus |
arm_3R | 1092985..1093124 | 335..474 | 100 | -> | Plus |
arm_3R | 1093184..1093558 | 475..849 | 100 | -> | Plus |
BO15713.complete Sequence
868 bp (868 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633557
> BO15713.complete
GAAGTTATCAGTCGACATGAACCAGTATGGTCTGTCCGTGGTGGACGACT
TCCTGGGGATGGAGACGGGCCTGAAGATCCTCAACGAGGTTCGAAGCATG
TACAACGCAGGAGCCTTCCAGGATGGCCAAGTGGTGACCAACCAGACGCC
CGATGCACCCGCGGTGCGCGGTGACAAGATCCGAGGCGATAAGATCAAGT
GGGTTGGTGGCAATGAGCCGGGCTGCAGCAATGTCTGGTATCTGACCAAT
CAGATTGACTCTGTGGTGTATCGTGTTAACACGATGAAGGATAATGGCAT
CTTGGGCAACTACCACATCAGGGAGCGCACGAGGGCAATGGTCGCTTGTT
ATCCGGGATCGGGAACTCACTACGTCATGCATGTGGACAATCCCCAAAAG
GATGGCCGCGTTATAACGGCCATATACTACCTGAATATCAACTGGGATGC
GCGGGAAAGTGGCGGCATTCTGCGAATTCGGCCAACACCCGGAACCACAG
TGGCGGATATTGAGCCCAAGTTTGATCGCCTGATATTCTTCTGGTCTGAC
ATTCGGAATCCCCACGAAGTGCAGCCCGCTCACCGTACCCGCTATGCCAT
CACCGTCTGGTACTTCGATGCCAAGGAACGCGAGGAGGCCCTCATTAGGG
CCAAGCTGGAAAACAGCAAGACGAACAATCTGGCAGCTCAAGCCCAAGCC
CAACAGGCTGAACCAGACTCCACCACCACACCACCCGCAGCACCAGCTTC
ATCCGCATCCAGTCTGCCGGTTAGCATGTCCACGGGAACGGGAGCGCTGA
ACGCCAATGTGTCGAGTAATTCCTGCGCCACCAGCAGCGAAATATGCACG
GCAAGCTTTCTAGACCAT
BO15713.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:01:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hph-RD | 1437 | CG44015-PD | 597..1434 | 13..850 | 4190 | 100 | Plus |
Hph-RC | 1437 | CG44015-PC | 597..1434 | 13..850 | 4190 | 100 | Plus |
Hph-RA | 978 | CG44015-PA | 138..975 | 13..850 | 4190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:01:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hph-RD | 3171 | CG44015-RD | 1125..1962 | 13..850 | 4190 | 100 | Plus |
Hph-RC | 2496 | CG44015-RC | 1125..1962 | 13..850 | 4190 | 100 | Plus |
Hph-RA | 2337 | CG44015-RA | 739..1576 | 13..850 | 4190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:01:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5267461..5267837 | 474..850 | 1885 | 100 | Plus |
3R | 32079331 | 3R | 5266792..5267032 | 13..253 | 1205 | 100 | Plus |
3R | 32079331 | 3R | 5267262..5267402 | 334..474 | 705 | 100 | Plus |
3R | 32079331 | 3R | 5267117..5267202 | 250..335 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:01:31 has no hits.
BO15713.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:52:26 Download gff for
BO15713.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hph-RA | 125..978 | 1..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:08:12 Download gff for
BO15713.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hph-RB | 286..1139 | 1..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:43:51 Download gff for
BO15713.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hph-RB | 303..1136 | 17..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:52:27 Download gff for
BO15713.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hph-RB | 286..1139 | 1..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:12:59 Download gff for
BO15713.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hph-RA | 743..1576 | 17..852 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:12:59 Download gff for
BO15713.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5266796..5267032 | 17..253 | 100 | -> | Plus |
3R | 5267121..5267201 | 254..334 | 100 | -> | Plus |
3R | 5267263..5267402 | 335..474 | 100 | -> | Plus |
3R | 5267462..5267837 | 475..852 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:43:51 Download gff for
BO15713.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1092518..1092754 | 17..253 | 100 | -> | Plus |
arm_3R | 1092843..1092923 | 254..334 | 100 | -> | Plus |
arm_3R | 1092985..1093124 | 335..474 | 100 | -> | Plus |
arm_3R | 1093184..1093559 | 475..852 | 99 | | Plus |
BO15713.pep Sequence
Translation from 16 to 868
> BO15713.pep
MNQYGLSVVDDFLGMETGLKILNEVRSMYNAGAFQDGQVVTNQTPDAPAV
RGDKIRGDKIKWVGGNEPGCSNVWYLTNQIDSVVYRVNTMKDNGILGNYH
IRERTRAMVACYPGSGTHYVMHVDNPQKDGRVITAIYYLNINWDARESGG
ILRIRPTPGTTVADIEPKFDRLIFFWSDIRNPHEVQPAHRTRYAITVWYF
DAKEREEALIRAKLENSKTNNLAAQAQAQQAEPDSTTTPPAAPASSASSL
PVSMSTGTGALNANVSSNSCATSSEICTASFLDH
BO15713.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:34:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hph-PB | 278 | CG44015-PB | 1..278 | 1..278 | 1468 | 100 | Plus |
Hph-PA | 325 | CG44015-PA | 48..325 | 1..278 | 1468 | 100 | Plus |
Hph-PD | 478 | CG44015-PD | 201..478 | 1..278 | 1468 | 100 | Plus |
Hph-PC | 478 | CG44015-PC | 201..478 | 1..278 | 1468 | 100 | Plus |