Clone BO15715 Report

Search the DGRC for BO15715

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:157
Well:15
Vector:pDNR-Dual
Associated Gene/TranscriptSyx6-RD
Protein status:BO15715.pep: validated full length
Sequenced Size:1003

Clone Sequence Records

BO15715.complete Sequence

1003 bp (1003 high quality bases) assembled on 2006-08-24

GenBank Submission: FJ633559

> BO15715.complete
GAAGTTATCAGTCGACATGTCTCTGGAGGATCCGTTTTTCGTGGTCAAGG
ACGAGGTATTCAAAGCTCTGAACAAAACCCGCGGCCTCTATCTGCGTTGG
CGGGAGCTGGGCGAGAACGGCGGAACGGAGGCTGAATGGACCACCACCGA
GCTGCGTAACTCGCTACGGAGCATCGAGTGGGATCTCGAGGACCTCGAGG
ACACTATCAGCATCGTTGAGAAGAATCCAAGCAAGTTTCGGATCGACAAC
CGCGAACTCTCCAGCCGGCGCCACTTCATCGACAACACTCGCGATGAGGT
CAAGCAGATGAAGGATAAGATGAGCCTGAACCGGAGCCGGGACAGAGACA
TCACCGCACACCAGCCGCTGCTCGACAACGATCGCCACAGCCCCAATCAC
AATCATTCCATTGCCATACCCAATTCGAATTCCAACTCCAACGAGTACCA
TCAGCATCCACACAACGATCGCACGTACCTCGTGGAGTGTCCCAACGGCA
ACTCGCTGATCAATAGCGGCAGTCAGGTGGCCAATACCATAGCTGGGACC
ATGTCGGCGGCAGCGGCAGCAGCATCCCGCCACAGCGGCACCAAGTACTC
CAAGCTGGAGAACGCCCTGGACAGTCCCAGTCACTATGGGCAGACGCATC
ACGGCGGCATGGACAGTCCGAGTCATAGGTACGTGGGCGAAACAGTGTCC
ATACAGCAGCGTATGATCCAGGGACAGGATGAGCAGCTAGACATGATCAG
CGATTCGATTGGTACCCTCAAGACGGTCTCGCGGCAAATTGGCGTTGAGC
TCGATGAGCAGGCCGTCATGCTAGACGACTTTGGGAACGAGTTCGATACC
ACGGAGTCCAAGTTGGATACGACCATGAAGAAAGTTGCCAAAGTCTTGCA
CATGAATAATGATAAACGACAGTGGGCCGCCATTCTCATCCTATCCGGAC
TGTTATTGTTTGTGATAATTTTGTTTATTATTTTGGCAAGCTTTCTAGAC
CAT

BO15715.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:13:44
Subject Length Description Subject Range Query Range Score Percent Strand
Syx6-RD 972 CG7736-PD 1..969 17..985 4845 100 Plus
Syx6-RE 1020 CG7736-PE 84..1017 52..985 4670 100 Plus
Syx6-RB 681 CG7736-PB 1..678 308..985 3390 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:13:45
Subject Length Description Subject Range Query Range Score Percent Strand
Syx6-RD 1982 CG7736-RD 390..1359 16..985 4850 100 Plus
Syx6-RB 1361 CG7736-RB 175..1108 52..985 4670 100 Plus
Syx6-RE 1945 CG7736-RE 531..1464 52..985 4670 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:13:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11220928..11221629 210..911 3510 100 Plus
2R 25286936 2R 11220464..11220621 52..209 790 100 Plus
2R 25286936 2R 11221783..11221857 911..985 375 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:13:43 has no hits.

BO15715.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:52:29 Download gff for BO15715.complete
Subject Subject Range Query Range Percent Splice Strand
Syx6-RD 1..972 17..989 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:08:15 Download gff for BO15715.complete
Subject Subject Range Query Range Percent Splice Strand
Syx6-RD 385..1368 13..995 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:48 Download gff for BO15715.complete
Subject Subject Range Query Range Percent Splice Strand
Syx6-RD 391..1359 17..987 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:52:29 Download gff for BO15715.complete
Subject Subject Range Query Range Percent Splice Strand
Syx6-RD 385..1368 13..995 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:13:47 Download gff for BO15715.complete
Subject Subject Range Query Range Percent Splice Strand
Syx6-RD 391..1359 17..987 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:13:47 Download gff for BO15715.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11220324..11220358 17..51 100 -> Plus
2R 11220464..11220621 52..209 100 -> Plus
2R 11220928..11221629 210..911 100 -> Plus
2R 11221784..11221857 912..987 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:48 Download gff for BO15715.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7107969..7108126 52..209 100 -> Plus
arm_2R 7107829..7107863 17..51 100 -> Plus
arm_2R 7108433..7109134 210..911 100 -> Plus
arm_2R 7109289..7109362 912..987 97   Plus

BO15715.pep Sequence

Translation from 16 to 1003

> BO15715.pep
MSLEDPFFVVKDEVFKALNKTRGLYLRWRELGENGGTEAEWTTTELRNSL
RSIEWDLEDLEDTISIVEKNPSKFRIDNRELSSRRHFIDNTRDEVKQMKD
KMSLNRSRDRDITAHQPLLDNDRHSPNHNHSIAIPNSNSNSNEYHQHPHN
DRTYLVECPNGNSLINSGSQVANTIAGTMSAAAAAASRHSGTKYSKLENA
LDSPSHYGQTHHGGMDSPSHRYVGETVSIQQRMIQGQDEQLDMISDSIGT
LKTVSRQIGVELDEQAVMLDDFGNEFDTTESKLDTTMKKVAKVLHMNNDK
RQWAAILILSGLLLFVIILFIILASFLDH

BO15715.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:00:32
Subject Length Description Subject Range Query Range Score Percent Strand
Syx6-PD 323 CG7736-PD 1..323 1..323 1675 100 Plus
Syx6-PE 339 CG7736-PE 29..339 13..323 1613 100 Plus
Syx6-PB 226 CG7736-PB 1..226 98..323 1169 100 Plus