BO15721.complete Sequence
2677 bp assembled on 2006-10-11
GenBank Submission: FJ633562
> BO15721.complete
GAAGTTATCAGTCGACATGATTGACGCGGCTTCCGCCGAGCGGGCAAGCC
CCCAGTTTATTGCCCTCTTCAATGACAATCTGAAACTGGGCCACGAGGAC
GACGGCCCACAGGCAGTCAATGGAAAGGACACCCACCAGCACGTACCCGC
CGACCTGGAGGCGACCTATGGAACCTTGTACGCCGCCTGCCAGGATCACG
CCGCCTTCTTTGCCCGGGACCACACCGAATTCGGCCAGCGCCTGCATGCC
GCCCACATTGCCTGGCAGGACTTCATTGTCTTGGCCAACCGACTGGTCCA
GCAGATCGATGCCTTCGCCCACGAGTACGATTTTGACGAGCAGACGCCGG
GCAATGGATACAGGAGCTTCATCTACGTGACCAACGCCTGCATCGCGCAT
GGCATTAGCATCTGCCAGCAGCTGACAGCCACCCGTTCCACCATATTCTT
CCGCAAGAAGTTCTACATGAAGGAGGTTGAGGCCTGTTCCCAGCTGTTGT
CGTCGCTGTGCACATGTCTGCAGTACCTGCTGATCCTTCGCCAGTGGTCG
GCTAGCACGGGTGATCTGTTCGCATGCGGAAATCACACTGCCGAGCAGCT
CTTCGAGCTGGGCGACACCATCAACCAGTATTGCTTTTACGGACGCTGCC
TGGGCTTTCAGTATGGCGACTCGATACGCGGAGTTCTCCGATTCCTCGGC
ATCAGCATGGCCAGCTACTCGGAGTCGTACTATTCGCAAGAGGGCGACGG
CCCCATCGTTAAGACCACACGCAGCCTGTGGACCAGCGGCAAGTATCTTA
TGAATCCGGAACTGCGCGCCCGTCGCATCGTTAACATCTCGCAGAATGCT
AAGATAGACTTTTGCAAATCCTTTTGGTTTCTGGCCGAGTCCGAGATGAT
GCACAAGCTGCCCAGCATTGTGGGCAGCTCCATTAAGGTAAACCGGCTCA
TCGAATTGCCAGCCGAGCCGCTAAAGCTGCCTCGCCGAAAGAATTTCAAG
GCATCGGACAATCTCAGCAGTGACGTTAACCAAAACCAAGGCGATGGTGA
TTTTGTGGAGATTCCCGTGCCCACGGCACATTTGGGACCTGGTTTACCGG
TCTCTGTTCGCTTGCTGAGCGCGAGACGACGTTCGGGAATGCTGGGCGAG
GGTCGCTATCGCGGCTGGCACAAGCCCATTCCGCCAAGTCCTTCGATTCT
GTTTCACTGCCATGGCGGTGGCTTTGTGGCCCAATCGTCCAAGTCCCACG
AACTGTATTTGCGCGACTGGGCCGTGGCACTGGACTGTCCTATTCTCTCG
GTGGATTACAGCCTAGCTCCTGAGGCGCCATTTCCACGCGCCCTGCAAGA
AGTTTACTACGCTTACTGCTGGCTTCTGAACAATACCGAACTCCTAGGCA
CAACAGCTGAGCGAGTTGTATGCGCAGGTGACTCGGCTGGGGCAAATCTG
TCAATTGGAGTAGCCCTCAAGTGCATTGAGCAGGGAGTTCGAGTGCCAGA
TGGTCTGTTTCTGGCCTACTGCCCAACTCTCGTCAGCTTTGTGCCCAGTC
CGGCCCGCCTTCTCTGTTTGATGGATCCCCTGCTGCCTTTCGGCTTCATG
ATGCGCTGCCTTCGTGCCTATGCCGCTCCCGCCCAGGAGACACTTCAGCA
GAATGCCAAGCAAGTCGAGGATGCCGCCCAGATACGCAATGTCCCCAAGT
CGAACGTGGGAAGCTTGAACTCCAGTCGCCGCACCTCGATGGCCAGAAGT
CCGCTTTCGCCGCTGGAAGCCAGCATGAACCCAGATGACGAAAGCAGCGA
CACCTTTGCCAGTGCCTCAGCCTCTTACCACAGCCAGACGGTGGAGCGTA
CCGATCTCCCCCACACCGAAGGCGACAACAGCTCGTGCGTCTCGTTCGAG
GATGATTCACAGCCCATTGTGCACTACCCAATCGAAATATCAGCCGACCC
ACCTAAGGATACCGCCTCTGCAGCCTATATTGACAATTTTCTGGACAAGT
ATCTCATTGACACGGCCACAATGGAGGTAACCGAAGAGACAGCTCCCGAA
GCGGTGCAAGCGCAGGCAAATGGACATGCGAAGATCAGTTCCGATGATGA
TATTCTAGTGGAGACTGGTCGGGATCTTGTTGCAATAGATACGCTGCAAG
GCCGCCTGCAGGAAGCCGTCAACAACATAACCAACACCTTGACGCGCTGC
ACGCAGTCCTACGAGATTCACGGAAGCAACGTGATGGCTCAACAGGATGT
GCGCAACATGGACGCACTGATAGCACGGAGTCCCAGCGAGGAGTTTGCAT
TCGATGTGCCTAAGGATCCATTCCTGTCGCCGTACTGGGCCAGTGATGAG
TGGCTTTCCCAACTGCCGGAGACCAAAATACTTACACTTAACATGGACCC
CTGTCTGGATGATTGCGTTATGTTTGCCAAGAAACTGAAGCGGCTTGGGC
GACAAGTTGACTTGGAAATACTTGAGGGGTTGCCGCACGGATTCCTAAAT
TTCACAATGTTATCCAACGAAGCCATGGAGGGCTCAAAGAAGTGCATCAA
ATCTCTACAGACGTTGCTTCAAACCGATTCGAAGACCAAGAACATTGACA
AAGCCAACTCGATGGACGAGGAGGAGTCCTCCAGTCCCAGTGCAAGTCTA
GCCGCTTCAGCAAGCTTTCTAGACCAT
BO15721.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:57:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsl-RC | 2646 | CG11055-PC | 1..2643 | 17..2659 | 13215 | 100 | Plus |
| Hsl-RA | 2646 | CG11055-PA | 1..2643 | 17..2659 | 13215 | 100 | Plus |
| Hsl-RB | 2646 | CG11055-PB | 1..2643 | 17..2659 | 13215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsl-RC | 3613 | CG11055-RC | 201..2843 | 17..2659 | 13215 | 100 | Plus |
| Hsl-RA | 3554 | CG11055-RA | 142..2784 | 17..2659 | 13215 | 100 | Plus |
| Hsl-RB | 3522 | CG11055-RB | 110..2752 | 17..2659 | 13215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:57:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20258193..20260559 | 17..2383 | 11835 | 100 | Plus |
| 2R | 25286936 | 2R | 20260806..20260956 | 2509..2659 | 755 | 100 | Plus |
| 2R | 25286936 | 2R | 20260621..20260750 | 2384..2513 | 635 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:57:32 has no hits.
BO15721.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:31:58 Download gff for
BO15721.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11055-RC | 1..2646 | 17..2660 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:49:41 Download gff for
BO15721.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11055-RC | 192..2843 | 9..2659 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:29 Download gff for
BO15721.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsl-RB | 110..2752 | 17..2661 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:31:59 Download gff for
BO15721.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11055-RC | 192..2843 | 9..2659 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:06:53 Download gff for
BO15721.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsl-RB | 110..2752 | 17..2661 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:06:53 Download gff for
BO15721.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20258193..20260559 | 17..2383 | 100 | -> | Plus |
| 2R | 20260621..20260746 | 2384..2509 | 100 | -> | Plus |
| 2R | 20260807..20260956 | 2510..2661 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:29 Download gff for
BO15721.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16145698..16148064 | 17..2383 | 100 | -> | Plus |
| arm_2R | 16148126..16148251 | 2384..2509 | 100 | -> | Plus |
| arm_2R | 16148312..16148461 | 2510..2661 | 98 | | Plus |
BO15721.pep Sequence
Translation from 16 to 2677
> BO15721.pep
MIDAASAERASPQFIALFNDNLKLGHEDDGPQAVNGKDTHQHVPADLEAT
YGTLYAACQDHAAFFARDHTEFGQRLHAAHIAWQDFIVLANRLVQQIDAF
AHEYDFDEQTPGNGYRSFIYVTNACIAHGISICQQLTATRSTIFFRKKFY
MKEVEACSQLLSSLCTCLQYLLILRQWSASTGDLFACGNHTAEQLFELGD
TINQYCFYGRCLGFQYGDSIRGVLRFLGISMASYSESYYSQEGDGPIVKT
TRSLWTSGKYLMNPELRARRIVNISQNAKIDFCKSFWFLAESEMMHKLPS
IVGSSIKVNRLIELPAEPLKLPRRKNFKASDNLSSDVNQNQGDGDFVEIP
VPTAHLGPGLPVSVRLLSARRRSGMLGEGRYRGWHKPIPPSPSILFHCHG
GGFVAQSSKSHELYLRDWAVALDCPILSVDYSLAPEAPFPRALQEVYYAY
CWLLNNTELLGTTAERVVCAGDSAGANLSIGVALKCIEQGVRVPDGLFLA
YCPTLVSFVPSPARLLCLMDPLLPFGFMMRCLRAYAAPAQETLQQNAKQV
EDAAQIRNVPKSNVGSLNSSRRTSMARSPLSPLEASMNPDDESSDTFASA
SASYHSQTVERTDLPHTEGDNSSCVSFEDDSQPIVHYPIEISADPPKDTA
SAAYIDNFLDKYLIDTATMEVTEETAPEAVQAQANGHAKISSDDDILVET
GRDLVAIDTLQGRLQEAVNNITNTLTRCTQSYEIHGSNVMAQQDVRNMDA
LIARSPSEEFAFDVPKDPFLSPYWASDEWLSQLPETKILTLNMDPCLDDC
VMFAKKLKRLGRQVDLEILEGLPHGFLNFTMLSNEAMEGSKKCIKSLQTL
LQTDSKTKNIDKANSMDEEESSSPSASLAASASFLDH
BO15721.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:54:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsl-PC | 881 | CG11055-PC | 1..881 | 1..881 | 4608 | 100 | Plus |
| Hsl-PA | 881 | CG11055-PA | 1..881 | 1..881 | 4608 | 100 | Plus |
| Hsl-PB | 881 | CG11055-PB | 1..881 | 1..881 | 4608 | 100 | Plus |
