BO15728.complete Sequence
1951 bp assembled on 2006-10-11
GenBank Submission: FJ633563
> BO15728.complete
GAAGTTATCAGTCGACATGCTGAAGTTCTGCTCGCTGCGAAGGAGCAAGG
AGCCAGCGATTGTGGCTCCCAAAGTGGCCAAGAGTTCATCGCTGCGCCTG
AAGGATGTCCCGCTGAATGACGCCCAACTGCTCCAAGTGCTCCATGCCCA
GCGGGAGCGAGGACCTCTGATTTTGGCCCTGAGCAGTGCGAAAAATTCAG
TGCAAACTTGCCGGAAGTGCGGAACCCCCTACGAAAACCGTCAGGTGGTC
GAAAACGGAACAACAGCCCGTCCGTCGTACAAGAGCAACGGATACGTCTC
AGAGCCCGAGCCCAACTACGATTCGGATTACTCGACGGTGAGGTACCGCA
CCCAGAATCCGCACCGCGTTCAGTCCGTCTCCTCGGCTGTCAATGTGCGC
AACCTTAATCAGGACGAGAAGTTGTATGGTACTATGCCAAATCCCATAAA
ATCAGCGCAAAACTCGTATAAGAATCAGCCAGGTCGCATCGAAAACTATA
CGACAGGTCATTCGTCTGTTTCCGAAAAGGAAAAGAAGGAGTGGTGGGAC
GAAGTGATGGACATCTTTAACGGGAATCTAGAACAATCGAAACTATCGCC
ATTGTACACTGAAGGTAACTTGTCCAGAGCTTTGGCCAAGGAATCCGGCT
ATACTAGCGATTCCAATCTGGTCTTCCGTAAGAAGGAGGTACCCGTGAGC
AGTCCCCTTAGCCCCGTTGAACAAAAGCAGGCTTACAAGAGTCTCCAGGC
AGGGGGAGAGCCACCTCTGCTCGGCTTCCGTAAACCAGCGCCCGAGAAAC
CCCGTGATCTCGACCCGAACGCGCCCCCCATTCCCCCACAGCCACCAGTC
AAGGGTCTCTCCTCCTACGATTTCCCGTACAGCACCGACACCGTCGACGG
ATCAGACGTGAACATCCACTTCAAGACCCCCATCAGGCATGAGCAGCGTC
AGAACTTGTCGGAAGAGGAACTAGCCATTCGCCAAGCGGAGCACATGCAG
AAGCTCTACCACGAGGAGCGCCGTCGCAAGTATCTACAGGAGCTGCAGGA
CATGAATTCGCGCCGCCACACGGACAACTTCACCCCGTCGCAGAAGTCGC
CCATCGCCCTCAATCGCTACGATGACTTCCCCACGGACGTGACCCTCAAG
TCGCTGGTGGGCCCCAAGACGGTGGCCCGGGCTCTCTTTAACTTCCAGGG
ACAGACCTCGAAGGAGCTATCCTTCCGCAAGGGCGACACAATCTACATCA
GGCGGCAGATTGATGCCAACTGGTATGAGGGCGAGCACAATGCCATGATT
GGACTGCTTCCAGCCAGCTATGTTGAGATTGTCAGTCGAGATGGAGCCCG
TACCCCATCCAAACGGCCATCGGAGGGTCAGGCCCGTGCCAAATACAACT
TCCAGGCCCAGTCGGGCATTGAACTCTCCTTGAACAAGGGCGAATTGGTC
ACTTTGACACGCCGAGTGGATGGCAACTGGTTCGAGGGCAAGATTGCCAA
CAGGAAGGGCATCTTCCCGTGCTCCTACGTGGAGGTACTTACTGATATTG
GTGCTGAGGACATTGCGGCCAGGACAACCACCGTGATCACCAGCCAGAGC
ACCACGAATCTGCGGCCCAATCTCGACGTGCTGCGCACAAACATCAACAA
TGAGTTCAATACGCTGACGCAAAATGGAGCACAGCCACCGAACGGAATCC
TCAAGGAAACGCGGACACTTCACAAGACGGACGCCCTCCATGTGGACACC
AGTTCCGAACCATTGGCGTACCGCGCACTGTACAAGTACCGGCCCCAGAA
CTCCGACGAACTGGAACTGCTCGAGGGAGATGTGGTCCATGTGCTGGAGA
AGTGCGACGACGGATGGTTCGTGGGCACCTCGCAGAGGACCGGCTGCTTC
GGCACATTCCCCGGCAACTACGTGGAACGGGCCGCAAGCTTTCTAGACCA
T
BO15728.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:58:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CAP-RI | 1920 | CG18408-PI | 1..1917 | 17..1933 | 9585 | 100 | Plus |
| CAP-RV | 7377 | CG18408-PV | 5706..7374 | 265..1933 | 8345 | 100 | Plus |
| CAP-RU | 2025 | CG18408-PU | 354..2022 | 265..1933 | 8345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:59:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CAP-RI | 2663 | CG18408-RI | 27..1949 | 11..1933 | 9615 | 100 | Plus |
| CAP-RV | 8693 | CG18408-RV | 6311..7979 | 265..1933 | 8345 | 100 | Plus |
| CAP-RU | 2872 | CG18408-RU | 490..2158 | 265..1933 | 8345 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:58:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10304621..10304931 | 903..1213 | 1555 | 100 | Plus |
| 2R | 25286936 | 2R | 10305736..10305972 | 1533..1769 | 1185 | 100 | Plus |
| 2R | 25286936 | 2R | 10305470..10305680 | 1326..1536 | 1055 | 100 | Plus |
| 2R | 25286936 | 2R | 10295866..10296047 | 625..806 | 910 | 100 | Plus |
| 2R | 25286936 | 2R | 10306145..10306310 | 1768..1933 | 830 | 100 | Plus |
| 2R | 25286936 | 2R | 10294609..10294767 | 264..422 | 795 | 100 | Plus |
| 2R | 25286936 | 2R | 10294846..10294966 | 421..541 | 605 | 100 | Plus |
| 2R | 25286936 | 2R | 10304988..10305102 | 1213..1327 | 575 | 100 | Plus |
| 2R | 25286936 | 2R | 10269262..10269362 | 86..186 | 505 | 100 | Plus |
| 2R | 25286936 | 2R | 10300489..10300588 | 806..905 | 500 | 100 | Plus |
| 2R | 25286936 | 2R | 10269420..10269501 | 185..266 | 410 | 100 | Plus |
| 2R | 25286936 | 2R | 10269042..10269116 | 11..85 | 375 | 100 | Plus |
| 2R | 25286936 | 2R | 10295741..10295794 | 574..627 | 270 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 07:58:58 has no hits.
BO15728.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:32:02 Download gff for
BO15728.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CAP-RI | 1..1920 | 17..1934 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:38:08 Download gff for
BO15728.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CAP-RI | 26..1942 | 17..1935 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:12:33 Download gff for
BO15728.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CAP-RI | 33..1949 | 17..1935 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:32:03 Download gff for
BO15728.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CAP-RI | 15..1942 | 3..1933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:08:23 Download gff for
BO15728.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CAP-RI | 33..1949 | 17..1935 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:08:23 Download gff for
BO15728.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10269048..10269116 | 17..85 | 100 | -> | Plus |
| 2R | 10269262..10269362 | 86..186 | 100 | -> | Plus |
| 2R | 10269422..10269501 | 187..266 | 100 | -> | Plus |
| 2R | 10294612..10294765 | 267..420 | 100 | -> | Plus |
| 2R | 10294846..10294966 | 421..541 | 100 | -> | Plus |
| 2R | 10295291..10295323 | 542..574 | 100 | -> | Plus |
| 2R | 10295742..10295794 | 575..627 | 100 | -> | Plus |
| 2R | 10295869..10296047 | 628..806 | 100 | -> | Plus |
| 2R | 10300490..10300588 | 807..905 | 100 | -> | Plus |
| 2R | 10304624..10304930 | 906..1212 | 100 | -> | Plus |
| 2R | 10304988..10305102 | 1213..1327 | 100 | -> | Plus |
| 2R | 10305472..10305678 | 1328..1534 | 100 | -> | Plus |
| 2R | 10305738..10305970 | 1535..1767 | 100 | -> | Plus |
| 2R | 10306145..10306310 | 1768..1935 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:12:33 Download gff for
BO15728.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6182351..6182471 | 421..541 | 100 | -> | Plus |
| arm_2R | 6182796..6182828 | 542..574 | 100 | -> | Plus |
| arm_2R | 6183247..6183299 | 575..627 | 100 | -> | Plus |
| arm_2R | 6183374..6183552 | 628..806 | 100 | -> | Plus |
| arm_2R | 6187995..6188093 | 807..905 | 100 | -> | Plus |
| arm_2R | 6156553..6156621 | 17..85 | 100 | -> | Plus |
| arm_2R | 6156767..6156867 | 86..186 | 100 | -> | Plus |
| arm_2R | 6156927..6157006 | 187..266 | 100 | -> | Plus |
| arm_2R | 6182117..6182270 | 267..420 | 100 | -> | Plus |
| arm_2R | 6192129..6192435 | 906..1212 | 100 | -> | Plus |
| arm_2R | 6192493..6192607 | 1213..1327 | 100 | -> | Plus |
| arm_2R | 6192977..6193183 | 1328..1534 | 100 | -> | Plus |
| arm_2R | 6193243..6193475 | 1535..1767 | 100 | -> | Plus |
| arm_2R | 6193650..6193815 | 1768..1935 | 98 | | Plus |
BO15728.pep Sequence
Translation from 16 to 1951
> BO15728.pep
MLKFCSLRRSKEPAIVAPKVAKSSSLRLKDVPLNDAQLLQVLHAQRERGP
LILALSSAKNSVQTCRKCGTPYENRQVVENGTTARPSYKSNGYVSEPEPN
YDSDYSTVRYRTQNPHRVQSVSSAVNVRNLNQDEKLYGTMPNPIKSAQNS
YKNQPGRIENYTTGHSSVSEKEKKEWWDEVMDIFNGNLEQSKLSPLYTEG
NLSRALAKESGYTSDSNLVFRKKEVPVSSPLSPVEQKQAYKSLQAGGEPP
LLGFRKPAPEKPRDLDPNAPPIPPQPPVKGLSSYDFPYSTDTVDGSDVNI
HFKTPIRHEQRQNLSEEELAIRQAEHMQKLYHEERRRKYLQELQDMNSRR
HTDNFTPSQKSPIALNRYDDFPTDVTLKSLVGPKTVARALFNFQGQTSKE
LSFRKGDTIYIRRQIDANWYEGEHNAMIGLLPASYVEIVSRDGARTPSKR
PSEGQARAKYNFQAQSGIELSLNKGELVTLTRRVDGNWFEGKIANRKGIF
PCSYVEVLTDIGAEDIAARTTTVITSQSTTNLRPNLDVLRTNINNEFNTL
TQNGAQPPNGILKETRTLHKTDALHVDTSSEPLAYRALYKYRPQNSDELE
LLEGDVVHVLEKCDDGWFVGTSQRTGCFGTFPGNYVERAASFLDH
BO15728.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:48:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CAP-PI | 639 | CG18408-PI | 1..639 | 1..639 | 3343 | 100 | Plus |
| CAP-PV | 2458 | CG18408-PV | 1903..2458 | 84..639 | 2926 | 100 | Plus |
| CAP-PU | 674 | CG18408-PU | 119..674 | 84..639 | 2926 | 100 | Plus |
| CAP-PO | 630 | CG18408-PO | 75..630 | 84..639 | 2926 | 100 | Plus |
| CAP-PK | 630 | CG18408-PK | 75..630 | 84..639 | 2926 | 100 | Plus |
