BO15734.complete Sequence
1921 bp assembled on 2006-10-11
GenBank Submission: FJ633565
> BO15734.complete
GAAGTTATCAGTCGACATGGTGGACCGCAACAGTGGAGTTCAATACGAAA
GAATGCCGACTGTTACTTTCAGTAACCTGCAGGGAACAGCGAGCGGCAGC
ACAGCGACCATAAATTTCCAGAGTGGAGCCACCAGTGCCAGGAATGGATC
CACGGCCTTTTTCGACAATGGGGCCAAGAGCTTTCAGGCCAAGCAACAAA
AGGATAAGAACCGACGCACTGGCAACGATGCCATAAGTTCAGCACTGTCG
GCAACCTATTGCAAACTGTTGGTACTGCTAGGCGTTTGTCTGCCGATCAC
GGAAGTTATATCCGATCAGATACCGACCTATGTGTACCAGGGATTCTACG
TATACCTCTATGTGGGCAGCATACTCTTTGTGATCTTTCTGTACATTAGT
GCCTTCCGTAATCGATCGCTCTTCAATGCCTTAAAGGACTATCACGAAAA
GAACAGCAATGTGCATCTGAAGCACAAGGTAACCCATTTTGGCAGCTTTT
ACTTGAGAGTGGGAGCCATCGCCTTCGCCATTGGAACTATGGTGTATTCG
GGCCTGGAGTTTGGCCAGTTCTTCGAGCTGAATGGCCATCCCGGATGCCG
GGATGTCTTCGTGGCCATTACACCCATCTGCCGGATGGTCCTGTGCATCG
CCCAGGTGCAGTTCATCTTCTTGAACACCACCTACATGGACATGGCCCGG
CACAAGGTGACCTCCCGCTTCGGACTCATGCACATGGTGGCCACCAACTT
GTGTGAGTGGCTGTACGTCCTGGTGGAGGAGACCAAGCACGAAATTTTCC
ACATCAGCCAGCACGAAGTGGATCCCGCCCACGACCTGGTCATTCATAAT
AGCTCCATGAGTAGAACGGACTGGGCCGCTGTCAATGAGTCCCTGCATCA
GCATCATCATCATCATGCCCTTAATAACACCCTGGTGGCCAATGTGAGTT
CTGTGATTGTGAATATGACCATTACTCCGTCGCCCACGCCGGCTGCCTTC
AGCGGCTGCTCCCGCACCACGATTATGGGTGCTCTGGTGCAGCAACTTTC
GCCATTCCTGTTCCCCTGCACCATCGAGTACTCCCTCATATGCGCCGTAA
TCCTCTTCGAGATGTGGAAGACGGTCAAATCGATTCCGGACATCGACAAG
ACGCGCAAGAATTCCGTCAAGCCCGCTGCTGCCAAGCCTGCCCATCACTT
CTCCGTGGACTGTTCCCAGTCGCACAAGGGACTCTTCTTCGGGATCCTGA
TCATAGTCATGACCATTATCTCGATGATCATGTACTTTGTGCTGTACACC
CAGCCGGGCTATGAACTGGTGGCCACACAGGAGGTCACTCTGTGGGAGAC
CTTCATGTACTTTATGTGCGCAGCGGCTGTGATAACGGGCATGATCCTCA
TGCGCGATCTGCGCTACATTAAGAACACCAGCGACGAGCACCACTCGATG
GATCTGGACAATCTCCTGCTGATTGTGGCCCAGACCGGGGTGTACCTGTA
CGGAATGTTCAGCATCCTGGGCAGTTACTTCGCCAAATGGGACACAGTGC
CCGACCGGGTGGAGGGCATTATAGCGGAGGTCTTTGGAGTGGTGCAGACC
TCGCTGCAGACCATGTTCATCCTGCATTCCAGCCATCGGCGCTGCAGGGG
CACCAATCAGGTGAGAAGGAAGCCCGGCAGGGAGATCATCACGTTCTTGC
TGGTGGCCAACATTGCCATCTGGTTCGTAAACACCCTGATCAAGGGACGA
GCCGTCTTCAGGGAGAGCCATTTGGAGTTCTTTGGAGTCTGGGGCTGGAC
GATCATCACCCACATCTCCATGCCGCTGGCCATTTTCTACCGCTTCCATT
CGACCATTTGCCTCTTCGAGGTGTGGAAAATCACGTACAAGGCCAAGGCG
CATGCAAGCTTTCTAGACCAT
BO15734.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:25:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3332-RB | 1890 | CG3332-PB | 1..1887 | 17..1903 | 9435 | 100 | Plus |
| CG3332-RC | 2391 | CG3332-PC | 557..2388 | 72..1903 | 9160 | 100 | Plus |
| CG3332-RA | 2394 | CG3332-PA | 560..2391 | 72..1903 | 9160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:25:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3332-RB | 2216 | CG3332-RB | 172..2058 | 17..1903 | 9435 | 100 | Plus |
| CG3332-RC | 2653 | CG3332-RC | 664..2495 | 72..1903 | 9160 | 100 | Plus |
| CG3332-RA | 2656 | CG3332-RA | 667..2498 | 72..1903 | 9160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:25:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3276532..3277477 | 1389..444 | 4730 | 100 | Minus |
| 2L | 23513712 | 2L | 3275958..3276473 | 1903..1388 | 2580 | 100 | Minus |
| 2L | 23513712 | 2L | 3277543..3277760 | 443..226 | 1090 | 100 | Minus |
| 2L | 23513712 | 2L | 3277829..3277987 | 225..67 | 795 | 100 | Minus |
| 2L | 23513712 | 2L | 3280308..3280363 | 72..17 | 280 | 100 | Minus |
| X | 23542271 | X | 5653915..5654003 | 1878..1790 | 205 | 82 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:25:24 has no hits.
BO15734.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:32:12 Download gff for
BO15734.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3332-RB | 1..1890 | 17..1904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:51:29 Download gff for
BO15734.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3332-RB | 171..2057 | 17..1905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:20:30 Download gff for
BO15734.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3332-RB | 172..2058 | 17..1905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:32:12 Download gff for
BO15734.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3332-RB | 166..2057 | 9..1903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:17:53 Download gff for
BO15734.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3332-RB | 172..2058 | 17..1905 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:17:53 Download gff for
BO15734.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3275956..3276472 | 1389..1905 | 99 | <- | Minus |
| 2L | 3276533..3277477 | 444..1388 | 100 | <- | Minus |
| 2L | 3277543..3277760 | 226..443 | 100 | <- | Minus |
| 2L | 3277829..3277981 | 73..225 | 100 | <- | Minus |
| 2L | 3280308..3280363 | 17..72 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:20:30 Download gff for
BO15734.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3277829..3277981 | 73..225 | 100 | <- | Minus |
| arm_2L | 3280308..3280363 | 17..72 | 100 | | Minus |
| arm_2L | 3275956..3276472 | 1389..1905 | 99 | <- | Minus |
| arm_2L | 3276533..3277477 | 444..1388 | 100 | <- | Minus |
| arm_2L | 3277543..3277760 | 226..443 | 100 | <- | Minus |
BO15734.pep Sequence
Translation from 16 to 1921
> BO15734.pep
MVDRNSGVQYERMPTVTFSNLQGTASGSTATINFQSGATSARNGSTAFFD
NGAKSFQAKQQKDKNRRTGNDAISSALSATYCKLLVLLGVCLPITEVISD
QIPTYVYQGFYVYLYVGSILFVIFLYISAFRNRSLFNALKDYHEKNSNVH
LKHKVTHFGSFYLRVGAIAFAIGTMVYSGLEFGQFFELNGHPGCRDVFVA
ITPICRMVLCIAQVQFIFLNTTYMDMARHKVTSRFGLMHMVATNLCEWLY
VLVEETKHEIFHISQHEVDPAHDLVIHNSSMSRTDWAAVNESLHQHHHHH
ALNNTLVANVSSVIVNMTITPSPTPAAFSGCSRTTIMGALVQQLSPFLFP
CTIEYSLICAVILFEMWKTVKSIPDIDKTRKNSVKPAAAKPAHHFSVDCS
QSHKGLFFGILIIVMTIISMIMYFVLYTQPGYELVATQEVTLWETFMYFM
CAAAVITGMILMRDLRYIKNTSDEHHSMDLDNLLLIVAQTGVYLYGMFSI
LGSYFAKWDTVPDRVEGIIAEVFGVVQTSLQTMFILHSSHRRCRGTNQVR
RKPGREIITFLLVANIAIWFVNTLIKGRAVFRESHLEFFGVWGWTIITHI
SMPLAIFYRFHSTICLFEVWKITYKAKAHASFLDH
BO15734.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:54:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3332-PB | 629 | CG3332-PB | 1..629 | 1..629 | 3299 | 100 | Plus |
| CG3332-PC | 796 | CG3332-PC | 171..796 | 4..629 | 3203 | 97.9 | Plus |
| CG3332-PA | 797 | CG3332-PA | 172..797 | 4..629 | 3203 | 97.9 | Plus |
| CG3332-PD | 647 | CG3332-PD | 38..647 | 20..629 | 3201 | 100 | Plus |
| CG42265-PE | 1455 | CG42265-PE | 885..1451 | 66..627 | 1168 | 41.2 | Plus |
