BO15738.complete Sequence
1936 bp assembled on 2006-10-11
GenBank Submission: FJ633567
> BO15738.complete
GAAGTTATCAGTCGACATGCACACGCAGTTGGCAGACGAGTCGTACCGCG
TGGGGGAAGCTGCCTCCTCGGCTTCCTATCTTCGCGGTGAACGCATCCTG
GACATAGCCAAGCGTTCGGGCGCCCAGGCCATCCACCCAGGCTACGGCTT
CCTCTCCGAGTCCGTCGAGTTTGCCGAGTTGTGCCAGCGTGAGGGCATCA
TCTTCATGGGTCCGCCCAGTTCCGCCATCCGGGACATGGGGATTAAGAGC
ACCAGCAAGGCCATAATGGCCGCTGCTGGGGTGCCGATCATCAATGGATA
CCATGGCGATGATCAGTCAGATGAGTGTTTGCAGCGAGAAGCCGACAAAA
TTGGCTTTCCCTTGATGATTAAAGCCGTCCGCGGCGGCGGAGGCAAAGGC
ATGAGAATCGCAGAAAAACCGGACGACTTCCTCACCGCTCTGAACTCAGC
TCGCACCGAGTCCGAGAAGTCGTTTGGCGACAGCTCTGTGCTTCTGGAGC
GGTACGTCCGATCTCCACGCCACGTAGAGGTTCAAGTATTTGCGGATCAG
TATGGTGATGCTGTCTATCTGTGGGAAAGAGATTGCTCCGTGCAAAGACG
TCATCAAAAGATTATTGAAGAGGCGCCAGCTCCAGGTTTGTCGGAAGATT
TGCGTCGTGAGCTGGGCGAGGCTGCTGTTCGTGCAGCGAAAGCTGTGGGC
TACGTAGGAGCTGGCACCGTGGAGTTCATTCTAGACAAAGAAGATCTCTC
TTTCCACTTCATGGAAATGAATACCCGCCTGCAGGTGGAGCATCCTATAA
CGGAAATGATTACGGGCACCGATTTGGTTGAATGGCAGATTCGCATTGCC
GCCGGTGAGCCATTACCCCTGAAGCAATCTGAGATTACGCGGCGTGGCCA
CGCATTTGAAGCTCGCATTTATGCAGAAAATCCTCGCGGAGGCTTTCTGC
CCGGAGCCGGACCCCTGCGATATTTGTCTACTCCCCAACCATCAAACAAC
GTTCGCGTGGAGACGGGTGTCCGAGAAGGAGATGAGGTGTCTGTGCACTA
CGACCCCATGATTGCCAAGCTAGTCGTTTGGGGCGAAAACCGCACACAAG
CGCTTAACTCATTGGTTGCCCGCCTGGGTGAATATCATATATCTGGTCTG
GACACTAACATTAATTTCCTCATCGACCTTGCGTCGCATCCTGAGTTTCA
GCTGGCCAATGTGCACACTGGCTTTATCGATGAGCAGTTCGATACTCTAT
TTCCGCCAATTATCATCAGTCCGCAGCAAGTCAGCCAAGCTGCTTTGGCG
CTAGTCTTAAACGAGTTGCAGGCAGCCTTTAGGAACGGAAACAAAGATCA
GGATCCATTTGTTGCCACCCCTAACGCTCGTCTGAATTACTCTTTGGTTC
GCAGATATGACTTGAAAGCCAATGAGAAGGTCTATTCTGTGGCTGTCAAG
TTTGATGGCGAGGATATGCAAATTCAGGTGGATAATGGCGACTGGCAGGA
TGCAAAGGTCGAAAGAGTTCAGGATGGAAGTCGTCTAAAAATTCGTGCCA
ATATCAATAGCAACGTCACCACATATAATGCTAGTATTGATGGCACTAGT
GTCTCTTTGTTTTCGGAAAGTGGCAAGGTCGATTTTGAGGTGGGACAGCC
GAAATTCTTAAGTGCCCAGGGCGATCAATTGGGTGCAGTTGGGTCTCGCA
TAGTGGCTCCCATGCCCGGGATTTTAGAGAAGGTGCTGGTAAAGCCCGGT
GACAAGGTCAAGAAGGGCGAAAACTTGGCAGTGCTTATTGCCATGAAAAT
GGAACACATTCTAAAAGCTCCAAAGGACGCCACCATTAAGTCTATTGGAG
GAGCCGCGGGCGATAACGTTGCTAAGGGAGCGGCCGTGATTACATTCGTC
GACGAGGAAGTAGAAAAGGCAAGCTTTCTAGACCAT
BO15738.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:03:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2118-RC | 2097 | CG2118-PC | 192..2094 | 16..1918 | 9515 | 100 | Plus |
| CG2118-RA | 2097 | CG2118-PA | 192..2094 | 16..1918 | 9515 | 100 | Plus |
| CG2118-RD | 1905 | CG2118-PD | 1..1902 | 17..1918 | 9510 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:03:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2118-RD | 2166 | CG2118-RD | 81..1983 | 16..1918 | 9515 | 100 | Plus |
| CG2118-RC | 2920 | CG2118-RC | 481..2383 | 16..1918 | 9515 | 100 | Plus |
| CG2118-RB | 2297 | CG2118-RB | 212..2114 | 16..1918 | 9515 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:03:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31792705..31793320 | 631..16 | 3080 | 100 | Minus |
| 3R | 32079331 | 3R | 31792144..31792650 | 1138..632 | 2535 | 100 | Minus |
| 3R | 32079331 | 3R | 31791793..31792084 | 1430..1139 | 1460 | 100 | Minus |
| 3R | 32079331 | 3R | 31791550..31791738 | 1618..1430 | 945 | 100 | Minus |
| 3R | 32079331 | 3R | 31791314..31791485 | 1790..1619 | 860 | 100 | Minus |
| 3R | 32079331 | 3R | 31791129..31791257 | 1918..1790 | 645 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:03:03 has no hits.
BO15738.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:32:17 Download gff for
BO15738.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2118-RA | 185..2097 | 10..1922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:49:47 Download gff for
BO15738.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2118-RB | 204..2116 | 10..1922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:39 Download gff for
BO15738.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2118-RB | 213..2114 | 17..1920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:32:17 Download gff for
BO15738.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2118-RB | 204..2116 | 10..1922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:39 Download gff for
BO15738.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2118-RB | 213..2114 | 17..1920 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:39 Download gff for
BO15738.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31791793..31792084 | 1139..1430 | 100 | <- | Minus |
| 3R | 31791127..31791256 | 1791..1920 | 98 | <- | Minus |
| 3R | 31791314..31791485 | 1619..1790 | 100 | <- | Minus |
| 3R | 31791550..31791737 | 1431..1618 | 100 | <- | Minus |
| 3R | 31792144..31792650 | 632..1138 | 100 | <- | Minus |
| 3R | 31792705..31793319 | 17..631 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:39 Download gff for
BO15738.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27616849..27616978 | 1791..1920 | 98 | <- | Minus |
| arm_3R | 27617036..27617207 | 1619..1790 | 100 | <- | Minus |
| arm_3R | 27617272..27617459 | 1431..1618 | 100 | <- | Minus |
| arm_3R | 27617515..27617806 | 1139..1430 | 100 | <- | Minus |
| arm_3R | 27617866..27618372 | 632..1138 | 100 | <- | Minus |
| arm_3R | 27618427..27619041 | 17..631 | 100 | | Minus |
BO15738.pep Sequence
Translation from 16 to 1936
> BO15738.pep
MHTQLADESYRVGEAASSASYLRGERILDIAKRSGAQAIHPGYGFLSESV
EFAELCQREGIIFMGPPSSAIRDMGIKSTSKAIMAAAGVPIINGYHGDDQ
SDECLQREADKIGFPLMIKAVRGGGGKGMRIAEKPDDFLTALNSARTESE
KSFGDSSVLLERYVRSPRHVEVQVFADQYGDAVYLWERDCSVQRRHQKII
EEAPAPGLSEDLRRELGEAAVRAAKAVGYVGAGTVEFILDKEDLSFHFME
MNTRLQVEHPITEMITGTDLVEWQIRIAAGEPLPLKQSEITRRGHAFEAR
IYAENPRGGFLPGAGPLRYLSTPQPSNNVRVETGVREGDEVSVHYDPMIA
KLVVWGENRTQALNSLVARLGEYHISGLDTNINFLIDLASHPEFQLANVH
TGFIDEQFDTLFPPIIISPQQVSQAALALVLNELQAAFRNGNKDQDPFVA
TPNARLNYSLVRRYDLKANEKVYSVAVKFDGEDMQIQVDNGDWQDAKVER
VQDGSRLKIRANINSNVTTYNASIDGTSVSLFSESGKVDFEVGQPKFLSA
QGDQLGAVGSRIVAPMPGILEKVLVKPGDKVKKGENLAVLIAMKMEHILK
APKDATIKSIGGAAGDNVAKGAAVITFVDEEVEKASFLDH
BO15738.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:18:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2118-PD | 634 | CG2118-PD | 1..634 | 1..634 | 3231 | 100 | Plus |
| CG2118-PC | 698 | CG2118-PC | 65..698 | 1..634 | 3231 | 100 | Plus |
| CG2118-PB | 634 | CG2118-PB | 1..634 | 1..634 | 3231 | 100 | Plus |
| CG2118-PA | 698 | CG2118-PA | 65..698 | 1..634 | 3231 | 100 | Plus |
| CG1516-PB | 1181 | CG1516-PB | 77..485 | 1..406 | 770 | 39.5 | Plus |
