BO15739.complete Sequence
1666 bp assembled on 2006-10-11
GenBank Submission: FJ633568
> BO15739.complete
GAAGTTATCAGTCGACATGCGTTTTGAGCCTCTGGGCCAGAAAATGTTCA
CCCGCCGCAATTGGTTGTTGCGCTGCAGCATCCTTATCAATGTGGCGGTG
ATCCTGTACATTGGCAGTCAATTGATGATCGGCGGCGGCAACAACTTCTC
GAACGGCGGTGGCTTCCTGCTGCAGGAGCAGCAACAGGTGTCAATGATGC
AAGTGGGCTCCGCCTCATCAGCGGCCCAGGTGCAGCAGCAACAGCAGCCC
ACTCCCAAGAACCAGAACCAGGTGGCCGAGATCTTCGAGTCCGAGGAAAA
GCAGCTGGTCAATGCCAACGCAGATCCTCCAGCAGCAGCGGCTCAGGTGG
CTGATGGCGGTGCTGGAGCCCCGCAGTTGGCGAACGATAGTGGTGCCGGG
GCGGCTGCTCTGGGCGATCCCTCCCAGGTGATAGGAAACATTGGGCCCGG
CGGTGTCGCCGAGGTGAACAATAGCCAGTCTGACGGCGGCTACATAGTCA
CAGGCGATGAGAAGGAGCTGGAGGAGCGTGTGCGATCGTTGATCAACTGC
TTCGACCACGACTACCACCAACAGACCTTGCAGCGTGGCGACTTCTGGGT
GCTGCAGAACTACGTGCGGGCGGAGCATGGCGACATCAAGTGCCATGAGT
CGATCACCTACACCACGCACGCGGACTACACGTTCCTGGACAACCTGGTG
CCGCTGTTGGAGCGCTGGAACGCCCCGGTGAGCATTGCCATGCACGCGCC
CGGCACGGACTTCCAGCCCACTCTGGACTCGATCCGGTATCTGCGAGAGT
GTCTGCCCGGCAGTCACCTGGTGCGCGCCTATACCACCTTCCACATCTAC
TTCGGAACCAAGCACATTCCTAAGTCTGTGCCCAAGCCTCACGAAGTCTT
CAAGACGGGATACAACTGCACACTTCCACCTCCGTACTTCAACGTCAGCT
CCGGGCACCTGTACAAGGCGCAAAAGAAGTTGCTGTATCCGGTGAACGTT
GGTCGTAACATTGCCCGCGACTCGGCACTCACCCACTTTATTCTGGCTTC
AGACATCGAGCTGTATCCGAACCCGGGTCTGGTCAAGAAGTTTCTCGAGA
TGATTGCTCGCAACGAACAGTACTTGAGACGCAAGGCACCCAGAGTATTT
CCATTGGCCATCTTCGAGGTGGAAGAGAACTCCCCAGTGCCACACGACAA
GACAGAGCTACAGGAGTTCCTTCGCACGGGCAAAGCCATACCATTCCACA
AACGAGTGTGCGCCAGCTGCCACGGGGTGCCCAAGTCCAAGGAGTGGATG
TCCGCCAACGAGACAGATGAACTAAGTGTGTTTCACATAGGAAAACGAAC
GGGTTACTATGTGCACTGGGAGCCCATATATATTGGAACTCATGCCGATC
CCCATTACGATGAACGGCTCAGCTGGGAGGGTAAAAGCGACAAGATGCCT
CAGGGCTATGCGCTTTGCGTAATGGACTACGAGTTCCACATATTGGACAA
CGCATTCCTGGTGCACAAGCCGGGCATCAAGGTGCTGAAAAAGGACAACC
GACGAGCGATGTTGTCCGGCAAGACAAACCAGCTGATACGGAAGATCATC
TATCCAGAACTCAAAATAATGTATGGCATGCGCAAGGGATGTGCGATAGC
AAGCTTTCTAGACCAT
BO15739.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:46:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9171-RG | 1635 | CG9171-PG | 1..1632 | 17..1648 | 8160 | 100 | Plus |
| CG9171-RF | 1635 | CG9171-PF | 1..1632 | 17..1648 | 8160 | 100 | Plus |
| CG9171-RE | 1635 | CG9171-PE | 1..1632 | 17..1648 | 8160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:46:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9171-RG | 3950 | CG9171-RG | 590..2223 | 15..1648 | 8170 | 100 | Plus |
| CG9171-RF | 3736 | CG9171-RF | 376..2009 | 15..1648 | 8170 | 100 | Plus |
| CG9171-RE | 3129 | CG9171-RE | 430..2063 | 15..1648 | 8170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:46:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5770014..5770888 | 1143..269 | 4375 | 100 | Minus |
| 2L | 23513712 | 2L | 5770951..5771204 | 268..15 | 1270 | 100 | Minus |
| 2L | 23513712 | 2L | 5769747..5769947 | 1341..1141 | 1005 | 100 | Minus |
| 2L | 23513712 | 2L | 5769319..5769516 | 1648..1451 | 990 | 100 | Minus |
| 2L | 23513712 | 2L | 5769573..5769688 | 1454..1339 | 580 | 100 | Minus |
| 2L | 23513712 | 2L | 12760577..12760683 | 1530..1424 | 250 | 82.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:46:05 has no hits.
BO15739.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:31:36 Download gff for
BO15739.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9171-RB | 1..1634 | 17..1651 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:49:31 Download gff for
BO15739.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9171-RB | 320..1960 | 7..1648 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:41:51 Download gff for
BO15739.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9171-RE | 432..2063 | 17..1650 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:31:37 Download gff for
BO15739.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9171-RB | 320..1960 | 7..1648 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:30:16 Download gff for
BO15739.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9171-RE | 432..2063 | 17..1650 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:30:16 Download gff for
BO15739.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5769748..5769944 | 1144..1340 | 100 | <- | Minus |
| 2L | 5769317..5769513 | 1454..1650 | 98 | <- | Minus |
| 2L | 5769574..5769686 | 1341..1453 | 100 | <- | Minus |
| 2L | 5770014..5770888 | 269..1143 | 100 | <- | Minus |
| 2L | 5770951..5771202 | 17..268 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:41:51 Download gff for
BO15739.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5769748..5769944 | 1144..1340 | 100 | <- | Minus |
| arm_2L | 5769317..5769513 | 1454..1650 | 98 | <- | Minus |
| arm_2L | 5769574..5769686 | 1341..1453 | 100 | <- | Minus |
| arm_2L | 5770014..5770888 | 269..1143 | 100 | <- | Minus |
| arm_2L | 5770951..5771202 | 17..268 | 100 | | Minus |
BO15739.pep Sequence
Translation from 16 to 1666
> BO15739.pep
MRFEPLGQKMFTRRNWLLRCSILINVAVILYIGSQLMIGGGNNFSNGGGF
LLQEQQQVSMMQVGSASSAAQVQQQQQPTPKNQNQVAEIFESEEKQLVNA
NADPPAAAAQVADGGAGAPQLANDSGAGAAALGDPSQVIGNIGPGGVAEV
NNSQSDGGYIVTGDEKELEERVRSLINCFDHDYHQQTLQRGDFWVLQNYV
RAEHGDIKCHESITYTTHADYTFLDNLVPLLERWNAPVSIAMHAPGTDFQ
PTLDSIRYLRECLPGSHLVRAYTTFHIYFGTKHIPKSVPKPHEVFKTGYN
CTLPPPYFNVSSGHLYKAQKKLLYPVNVGRNIARDSALTHFILASDIELY
PNPGLVKKFLEMIARNEQYLRRKAPRVFPLAIFEVEENSPVPHDKTELQE
FLRTGKAIPFHKRVCASCHGVPKSKEWMSANETDELSVFHIGKRTGYYVH
WEPIYIGTHADPHYDERLSWEGKSDKMPQGYALCVMDYEFHILDNAFLVH
KPGIKVLKKDNRRAMLSGKTNQLIRKIIYPELKIMYGMRKGCAIASFLDH
BO15739.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:55:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9171-PG | 544 | CG9171-PG | 1..544 | 1..544 | 2901 | 100 | Plus |
| CG9171-PF | 544 | CG9171-PF | 1..544 | 1..544 | 2901 | 100 | Plus |
| CG9171-PE | 544 | CG9171-PE | 1..544 | 1..544 | 2901 | 100 | Plus |
| CG9171-PD | 544 | CG9171-PD | 1..544 | 1..544 | 2901 | 100 | Plus |
| CG9171-PC | 544 | CG9171-PC | 1..544 | 1..544 | 2901 | 100 | Plus |
