BO15743.complete Sequence
1249 bp (1249 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633569
> BO15743.complete
GAAGTTATCAGTCGACATGGATCAGGATCACTTAAAGAATGCTAAAAACG
CCACGCGGAGAGTTGGTCGTTTGCGGTCGCTGGGAATCGTTACAGTCGGA
GGAGCTGCCTTGGTGGCGGGCATTACGGCATACAAGAACCAGGACCAGTT
GTTCCGGACCTTCGTGATGCCAGCGGTGCGACTTCTTCCGGCGGAAGCCA
GCCATCAACTGGCCGTGCTGGCGTGCAAGTACCGCCTGTGCCCGGTTTCA
CAGTACCATGATGACCAGAACTTGCACACGTCGTTCTTTGGCCGGATGCT
TAGCAATCCCATTGGCATTGCAGCGGGATTCGATAAGAACGCGGAGGCGG
TGGACGGCCTGCAGGATCTAGGATTCGGATTTATAGAGGTGGGCACAGTT
ACCCCGGCGGCTCAGGAGGGCAATCCCAAGCCGAGAGTATTCCGGTTGAC
CGAGGACAAGGCCATCATTAATCGGTACGGATTTAATAGCGACGGGCATC
AGGCCGTGCTCCAACGGCTGCGCTTGCTCCGCAAAAAGGAGAACTTCAAT
GGAGTTGTGGGCGTGAATCTGGGCCGGAACAAGACCACCATGAGCCCGAT
AGCGGATTATGTACAGGGTGTTCGGGTTTTCGGGCCCGTAGCAGACTACC
TGGTCATTAATGTGAGCAGTCCGAACACCAAGGGCCTGCGCGATATGCAG
AGCAAGGAGAAGCTAAGAGAGCTCCTGGAACAGGTCAACGACACGAAATC
CTCCCTGGATAAGAACAAGAATGTGCCTATACTCTTGAAACTTTCGCCGG
ATCTATCTTTGGACGACATGAAGGACATCGTGTGGGTAATCAAGCGCAAG
AAGAGCCGCGTGGATGGCCTGATCGTTTCAAACACCACGGTGTCGCGGGA
AAACATCGAAAAGAACAAGCTGGCCGAGGAAACTGGCGGATTAAGTGGTC
CTCCACTCAAGGCCCGCTCCACAGAGATGATCGCCCAGATGTACCAGCTC
ACCGATGGAAAGATTCCCATCATAGGCGTCGGCGGAGTGGCTTCCGGCTA
TGATGCATACGAAAAGATCGAAGCTGGAGCTTCCTACGTCCAAATCTACA
CGGCTTTAGTGTACGAGGGACCCGCTCTTGTGGAAGACATTAAGGCGGAG
CTGTCGGCGCTGATCACACGGCTGGGTCACACTAATGTTGCGGACGTGGT
GGGCACCAACAGCAAGTTCTACTTGCCCAAAGCAAGCTTTCTAGACCAT
BO15743.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:32:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dhod-RD | 1218 | CG9741-PD | 1..1215 | 17..1231 | 6075 | 100 | Plus |
| Dhod-RA | 1218 | CG9741-PA | 1..1215 | 17..1231 | 6075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:32:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dhod-RD | 1472 | CG9741-RD | 126..1347 | 10..1231 | 6095 | 99.9 | Plus |
| Dhod-RA | 1355 | CG9741-RA | 9..1230 | 10..1231 | 6095 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:32:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8651516..8652682 | 1231..65 | 5835 | 100 | Minus |
| 3R | 32079331 | 3R | 8652736..8652791 | 65..10 | 265 | 98.2 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:32:19 has no hits.
BO15743.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:52:32 Download gff for
BO15743.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dhod-RA | 1..1218 | 17..1234 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:08:20 Download gff for
BO15743.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dhod-RD | 124..1351 | 7..1235 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:31:08 Download gff for
BO15743.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dhod-RA | 16..1230 | 17..1233 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:52:32 Download gff for
BO15743.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dhod-RA | 478..1705 | 7..1235 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:02:43 Download gff for
BO15743.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dhod-RA | 16..1230 | 17..1233 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:02:43 Download gff for
BO15743.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8651513..8652682 | 65..1233 | 99 | <- | Minus |
| 3R | 8652737..8652784 | 17..64 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:31:08 Download gff for
BO15743.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4477235..4478404 | 65..1233 | 99 | <- | Minus |
| arm_3R | 4478459..4478506 | 17..64 | 100 | | Minus |
BO15743.pep Sequence
Translation from 16 to 1249
> BO15743.pep
MDQDHLKNAKNATRRVGRLRSLGIVTVGGAALVAGITAYKNQDQLFRTFV
MPAVRLLPAEASHQLAVLACKYRLCPVSQYHDDQNLHTSFFGRMLSNPIG
IAAGFDKNAEAVDGLQDLGFGFIEVGTVTPAAQEGNPKPRVFRLTEDKAI
INRYGFNSDGHQAVLQRLRLLRKKENFNGVVGVNLGRNKTTMSPIADYVQ
GVRVFGPVADYLVINVSSPNTKGLRDMQSKEKLRELLEQVNDTKSSLDKN
KNVPILLKLSPDLSLDDMKDIVWVIKRKKSRVDGLIVSNTTVSRENIEKN
KLAEETGGLSGPPLKARSTEMIAQMYQLTDGKIPIIGVGGVASGYDAYEK
IEAGASYVQIYTALVYEGPALVEDIKAELSALITRLGHTNVADVVGTNSK
FYLPKASFLDH
BO15743.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:00:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dhod-PD | 405 | CG9741-PD | 1..405 | 1..405 | 2053 | 100 | Plus |
| Dhod-PA | 405 | CG9741-PA | 1..405 | 1..405 | 2053 | 100 | Plus |
