BO15746.complete Sequence
1999 bp assembled on 2006-10-11
GenBank Submission: FJ633571
> BO15746.complete
GAAGTTATCAGTCGACATGGGTCTCATGCGCACTTTGTGCTGCTGCTTCG
GTGCAGGGCAGAGTAATCAGTCTTCGGGCGCAAGTCCAGCTTATAAGGCG
TGTCCGGACGAGGAGCCTTTGGAGGAGTTGGTCACAGATCCAGAAAGAGC
GGATCAGTCTCCTAAGAATGAGATCGAACAATCCCTGGCCGCCGCCATCT
CAGACCGTGCTACGGATGAGGTGCTGGAGGCCCTGACCCGCTACCGCCGT
GGCATGGGCATCGCGGAATCGCCATCGGTGCTGCTAGACGAACCGCAGAC
GCCGGACATCGTGCGCAGTCGCTCCAGTCATGATGCGGATGGTTTAATCA
TACGACCGGGTGGACGAGGCTCGATATTGCCCAAACTGGGCTTGGAATCG
CCCACTGCCACACCGCATCTGCCCACCAAGCGACGCAGTCTGGCAAAGAA
AGTGCGTCCCCAGTCCGTGGTGGAGAATCTCAGCCTGGGCCACTTCCCTG
ACCTCCTGGAGTCACCCTCCTCGCACCGATCTAACTCCCAGTTGTCCGCC
CGTGCAGCTGCAGGTGCCGCCGCCTTGGTGGGAGCCGCCAATATGACCGA
CAGCATCGCTGTGGACGACGGAGGAGTGGATGAGTGTTGCGACTCCATCA
CCGAGCTGCCCAGCGCCTCGTTCCAGCTCCAGCATCTGGTCAAAGGACGT
CCGAAGCGGGCCAAAACGCGTGCACCAACTCGGCCGTTGGTCACCACCGA
GTGCGCCGGGGGCAGCAGGGAAATTGGCGAAGGTTTGGAACACTTCTTCC
GGCCCGGTTCTGTTACGCCCACTACCCTGACTCCCCTAGTTTCTCCAACG
TCGGAGGAATGCAGCTCCTTGTCGTTTGTGGACAGTCCCACGATGAGCCG
CGATGGGAATGGACATATGACCTCCGAGGAGACCACTCCCATTCTGGAGG
AACGCCGACCAATTAAATTGGAGCGCCAGTCGCCATTGCTCAAAAGTGCG
TCATGGGCCACCCGCTCCCGGTCCACGGACAATCTAGAGAAGTATTCGCC
ACTGGTGGGTCGTAAGTCCCCGCTGGTCAAGATGCGAACTGAAGGAGGTC
CCGGCTCGGGATCTGCCACCGGTGCTGAGGAGACGTCTATGCCCAGTTCT
AATCTGCTTAAGGCAACCGCCCGAGAGGACAAAACGCGTTCGCCCAGCAG
CGATTCGATCAAAAGCCATGCCGCAGGCGAGGGTAGTGTTATTGTGAAGA
CTGGCAACGGCATCCTGCGAACACCCATAGTTCTGCAGAAGCCGCGTCCG
TGGTCGGTTGTTGGAAGCGAGCCAAAGGCAGGCGGAGATCTTATTACAGG
CAATGGGAATGCCGACTCCAGCAAGACCACGCCGGACAAACTAGAAGAAG
ATGATGTCGAGATAGTGACATTTGGAAATACCTGCAGTGGCTCAATTGTT
GGCATCACGCCGGGCATAGCTTTATCCACCAGTGGCGGTGGAAGCATTGT
GGGCATTACACCAGGAGGTGCCCTTGAAAAGAAGTCTGTGCGAGAACTAG
CAGCGGGTCTAAACAGAATGGAACTCCCCCTAAAGCCGCCCGTTATGCCA
AGAACCCTGCTGAACGCGACTAGTGTCCGCACAAGCACGTCCTCCACAGG
CTCCACCTCCAATAGTGTATCAGTCAGCTCATCCACGAACGCCAACACAT
CGATGACAGTATTAAACCAGAGCCAGACACGATCACGGATCGTAAGCTCG
ACCAGCAGCACTGACAGCACCGAGACCATCACAGAGCGCAGCACCACCAG
CACTAGCAGCAGTTCATCCAGCAGCTACGAGAAGCAGCATGCCAAGGCCT
GTGCCAATTTAATCAGCAACGAAATCCTCAGTATGCGCAACGGACAGTTG
GGCGCCAAGTCTGGAAGCTGCGCAGAAAGTGGTGGTGTGAAGCGGATAGC
CGGCAAGGAGATCTCCACGCTATTCGAGGTTGCAAGCTTTCTAGACCAT
BO15746.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:52:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1399-RA | 1968 | CG1399-PA | 1..1965 | 17..1981 | 9825 | 100 | Plus |
| CG1399-RC | 4290 | CG1399-PC | 2475..4287 | 169..1981 | 9065 | 100 | Plus |
| CG1399-RB | 4359 | CG1399-PB | 2544..4356 | 169..1981 | 9065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:52:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1399-RA | 3034 | CG1399-RA | 145..2109 | 17..1981 | 9825 | 100 | Plus |
| CG1399-RC | 5968 | CG1399-RC | 3231..5043 | 169..1981 | 9065 | 100 | Plus |
| CG1399-RB | 5468 | CG1399-RB | 2731..4543 | 169..1981 | 9065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:52:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7679340..7679930 | 997..407 | 2955 | 100 | Minus |
| 2R | 25286936 | 2R | 7677995..7678405 | 1981..1571 | 2055 | 100 | Minus |
| 2R | 25286936 | 2R | 7678868..7679276 | 1400..992 | 2030 | 99.8 | Minus |
| 2R | 25286936 | 2R | 7681307..7681470 | 332..169 | 820 | 100 | Minus |
| 2R | 25286936 | 2R | 7681541..7681692 | 168..17 | 760 | 100 | Minus |
| 2R | 25286936 | 2R | 7678692..7678808 | 1515..1399 | 585 | 100 | Minus |
| 2R | 25286936 | 2R | 7680924..7680999 | 407..332 | 380 | 100 | Minus |
| 2R | 25286936 | 2R | 7678570..7678629 | 1571..1512 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:52:20 has no hits.
BO15746.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:54:28 Download gff for
BO15746.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1399-RA | 1..1968 | 17..1984 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:26:42 Download gff for
BO15746.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1399-RA | 140..2113 | 14..1988 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:34:24 Download gff for
BO15746.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1399-RA | 145..2109 | 17..1983 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:54:28 Download gff for
BO15746.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1399-RA | 140..2113 | 14..1988 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:28:27 Download gff for
BO15746.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1399-RA | 145..2109 | 17..1983 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:28:27 Download gff for
BO15746.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7677992..7678404 | 1572..1983 | 99 | <- | Minus |
| 2R | 7678570..7678626 | 1515..1571 | 100 | <- | Minus |
| 2R | 7678693..7678806 | 1401..1514 | 100 | <- | Minus |
| 2R | 7678868..7679272 | 996..1400 | 100 | <- | Minus |
| 2R | 7679342..7679930 | 407..995 | 100 | <- | Minus |
| 2R | 7680925..7680999 | 332..406 | 100 | <- | Minus |
| 2R | 7681308..7681470 | 169..331 | 100 | <- | Minus |
| 2R | 7681541..7681692 | 17..168 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:34:24 Download gff for
BO15746.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3565497..3565909 | 1572..1983 | 99 | <- | Minus |
| arm_2R | 3566075..3566131 | 1515..1571 | 100 | <- | Minus |
| arm_2R | 3566198..3566311 | 1401..1514 | 100 | <- | Minus |
| arm_2R | 3566373..3566777 | 996..1400 | 100 | <- | Minus |
| arm_2R | 3566847..3567435 | 407..995 | 100 | <- | Minus |
| arm_2R | 3568430..3568504 | 332..406 | 100 | <- | Minus |
| arm_2R | 3568813..3568975 | 169..331 | 100 | <- | Minus |
| arm_2R | 3569046..3569197 | 17..168 | 100 | | Minus |
BO15746.pep Sequence
Translation from 16 to 1999
> BO15746.pep
MGLMRTLCCCFGAGQSNQSSGASPAYKACPDEEPLEELVTDPERADQSPK
NEIEQSLAAAISDRATDEVLEALTRYRRGMGIAESPSVLLDEPQTPDIVR
SRSSHDADGLIIRPGGRGSILPKLGLESPTATPHLPTKRRSLAKKVRPQS
VVENLSLGHFPDLLESPSSHRSNSQLSARAAAGAAALVGAANMTDSIAVD
DGGVDECCDSITELPSASFQLQHLVKGRPKRAKTRAPTRPLVTTECAGGS
REIGEGLEHFFRPGSVTPTTLTPLVSPTSEECSSLSFVDSPTMSRDGNGH
MTSEETTPILEERRPIKLERQSPLLKSASWATRSRSTDNLEKYSPLVGRK
SPLVKMRTEGGPGSGSATGAEETSMPSSNLLKATAREDKTRSPSSDSIKS
HAAGEGSVIVKTGNGILRTPIVLQKPRPWSVVGSEPKAGGDLITGNGNAD
SSKTTPDKLEEDDVEIVTFGNTCSGSIVGITPGIALSTSGGGSIVGITPG
GALEKKSVRELAAGLNRMELPLKPPVMPRTLLNATSVRTSTSSTGSTSNS
VSVSSSTNANTSMTVLNQSQTRSRIVSSTSSTDSTETITERSTTSTSSSS
SSSYEKQHAKACANLISNEILSMRNGQLGAKSGSCAESGGVKRIAGKEIS
TLFEVASFLDH
BO15746.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:21:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1399-PA | 655 | CG1399-PA | 1..655 | 1..655 | 3298 | 100 | Plus |
| CG1399-PC | 1429 | CG1399-PC | 826..1429 | 52..655 | 3020 | 100 | Plus |
| CG1399-PB | 1452 | CG1399-PB | 849..1452 | 52..655 | 3020 | 100 | Plus |
| CG1399-PF | 1486 | CG1399-PF | 847..1456 | 52..654 | 2998 | 98.9 | Plus |
| CG1399-PG | 1296 | CG1399-PG | 826..1292 | 52..518 | 2362 | 100 | Plus |
