BO15750.complete Sequence
1444 bp assembled on 2007-10-17
GenBank Submission: FJ633573
> BO15750.complete
GAAGTTATCAGTCGACATGTCGGACTATAGATCGCAATCGCGCAGTGGCG
GGGGGCGTGGCGGTCAGGAGTACTCGAACGACGACGATCCGCCGATGTCG
CGTCTCTTCATCATTTGCAACAAGGCGCACACCGAGGAGGATTTCCGTGA
AGCCTTCTCGCCATACGGCGAAATCGAGGATATCTGGGTGGTGAAGGACA
AGCACACCCAGGAGAACAAGGGAATCGCGTACGTCAAGTTCTCCAAGACA
TCCGATGCTGCCAAGGCACAGGAGGAGATGAACGGCAAGACCATTGGCAA
GATGGATCGCACCCTTAAAGTCCTGGTGGCAGCCAATCGCAATCAGGGCT
CAAATAAGTCTGAGAACGAGCAGGAGAAGTACGTGAGACTCTTCATAGTG
ATCCCCAAAACAGCCACCGAGGAGGATATTCGCGAGGAATTCTCGCAGTG
GGGCGATGTGGAATCTGTCACAATTGTCAAGGAGAAGAACAATGGCAATC
CCAAGGGCTTCGGATATGTCCGCTTTACCAAGTTTTACTATGCAGCTGTG
GCTTTCGAAAACTGCTCCGCCAAGTATAAAGCTGTCTTTGCCGAGCCAAA
GGGTTCTACACGCACACAGCGTGACCAGTACGGCCGTCCCTCCGAGGACA
ATCCCTTGTATAGCAGCTCGGGACGTGGCAATTCCAATTTCAATGGAGGC
GGTAGCAGCAGCGGTGGCGGCGGCAGCAACAGCTACAACAACGACTGGAA
TGTATCGCAGAACAACGACATGGCGGCCTTCCTGCGCATGCAGAATGTGC
CAGTGGCCCAGCCATCCTGTCTGGAGGTTAACGTGAGCAACTGCGTCAAC
CAGGATCAGCTCTGGCGTCTCTTCGACATAATTCCCGGCTTGGATTACTG
CCAAATCATGCGCGAACATGGACCGCGCACCAATGAGGCCTTAGTGGTGT
ACGACAACCCAGAAGCCGCCATTTATGCCAAGGACAAACTTCATGGCCTG
GAGTACCCAATGGGCGAACGCATCATTGTCAAAGTCAATGGAATGAGCTC
AGCTCGCATGGACACATCCTTCATAGACAAGCGAACCAAAAAGGATGCCA
TCTGCAATGTTCCCTTGCCCCCAACTCAGCCACTGGCATCGCCGGACGAC
CAGGTGGCCCAACGACTGTTCATTGTGCTCTCAGCGAACTTGCCGCATTC
GATATTGAAGAACATATTCTCTTGCTGGTCGGGACTGATCGACGTCTACC
TTCTGCCCAACAAGAACTGTGGCTACGTCAAGTATGCGGAGGTTGAGAGT
GCTCAATTGGCCATTCGTACCCTAAACGGAGCCGAAATTTGCGGCACCAA
AATCAAGGTCATGGAGGCTGAGGAGCGAAGTGGCTCCGACGGCGATGATG
GCGGTCGCAAGCGATTGAGACGGAACGCAAGCTTTCTAGACCAT
BO15750.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:45:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1316-RA | 1413 | CG1316-PA | 1..1410 | 17..1426 | 7035 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:45:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1316-RA | 2222 | CG1316-RA | 113..1523 | 16..1426 | 7040 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:45:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4284605..4284990 | 532..917 | 1930 | 100 | Plus |
| 3L | 28110227 | 3L | 4283963..4284283 | 16..336 | 1590 | 99.7 | Plus |
| 3L | 28110227 | 3L | 4284343..4284543 | 333..533 | 990 | 99.5 | Plus |
| 3L | 28110227 | 3L | 4285598..4285771 | 1186..1359 | 870 | 100 | Plus |
| 3L | 28110227 | 3L | 4285425..4285531 | 1080..1186 | 535 | 100 | Plus |
| 3L | 28110227 | 3L | 4285175..4285272 | 982..1079 | 490 | 100 | Plus |
| 3L | 28110227 | 3L | 4285845..4285915 | 1356..1426 | 355 | 100 | Plus |
| 3L | 28110227 | 3L | 4285053..4285117 | 918..982 | 325 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 01:45:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6696..6780 | 667..749 | 132 | 63.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1116..1157 | 704..745 | 120 | 76.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1105..1151 | 699..745 | 118 | 72.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6766 | 703..750 | 114 | 70.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2296..2346 | 691..742 | 113 | 71.2 | Plus |
BO15750.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:58 Download gff for
BO15750.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1316-RA | 1..1413 | 17..1429 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:16:28 Download gff for
BO15750.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1316-RA | 101..1519 | 7..1426 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:01:04 Download gff for
BO15750.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1316-RA | 114..1523 | 17..1428 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:46:03 Download gff for
BO15750.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1316-RA | 110..1519 | 17..1428 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:31:11 Download gff for
BO15750.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1316-RA | 114..1523 | 17..1428 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:31:11 Download gff for
BO15750.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4284347..4284541 | 337..531 | 100 | -> | Plus |
| 3L | 4283964..4284283 | 17..336 | 99 | -> | Plus |
| 3L | 4284605..4284990 | 532..917 | 100 | -> | Plus |
| 3L | 4285053..4285116 | 918..981 | 100 | -> | Plus |
| 3L | 4285175..4285272 | 982..1079 | 100 | -> | Plus |
| 3L | 4285425..4285531 | 1080..1186 | 100 | -> | Plus |
| 3L | 4285599..4285769 | 1187..1357 | 100 | -> | Plus |
| 3L | 4285847..4285915 | 1358..1428 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:01:04 Download gff for
BO15750.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4285053..4285116 | 918..981 | 100 | -> | Plus |
| arm_3L | 4285175..4285272 | 982..1079 | 100 | -> | Plus |
| arm_3L | 4285425..4285531 | 1080..1186 | 100 | -> | Plus |
| arm_3L | 4285599..4285769 | 1187..1357 | 100 | -> | Plus |
| arm_3L | 4285847..4285915 | 1358..1428 | 97 | | Plus |
| arm_3L | 4283964..4284283 | 17..336 | 99 | -> | Plus |
| arm_3L | 4284347..4284541 | 337..531 | 100 | -> | Plus |
| arm_3L | 4284605..4284990 | 532..917 | 100 | -> | Plus |
BO15750.pep Sequence
Translation from 16 to 1444
> BO15750.pep
MSDYRSQSRSGGGRGGQEYSNDDDPPMSRLFIICNKAHTEEDFREAFSPY
GEIEDIWVVKDKHTQENKGIAYVKFSKTSDAAKAQEEMNGKTIGKMDRTL
KVLVAANRNQGSNKSENEQEKYVRLFIVIPKTATEEDIREEFSQWGDVES
VTIVKEKNNGNPKGFGYVRFTKFYYAAVAFENCSAKYKAVFAEPKGSTRT
QRDQYGRPSEDNPLYSSSGRGNSNFNGGGSSSGGGGSNSYNNDWNVSQNN
DMAAFLRMQNVPVAQPSCLEVNVSNCVNQDQLWRLFDIIPGLDYCQIMRE
HGPRTNEALVVYDNPEAAIYAKDKLHGLEYPMGERIIVKVNGMSSARMDT
SFIDKRTKKDAICNVPLPPTQPLASPDDQVAQRLFIVLSANLPHSILKNI
FSCWSGLIDVYLLPNKNCGYVKYAEVESAQLAIRTLNGAEICGTKIKVME
AEERSGSDGDDGGRKRLRRNASFLDH
BO15750.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:28:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1316-PA | 470 | CG1316-PA | 1..470 | 1..470 | 2480 | 100 | Plus |
| Hrb98DE-PF | 361 | CG9983-PF | 5..242 | 6..244 | 197 | 23.9 | Plus |
| Hrb98DE-PD | 361 | CG9983-PD | 5..242 | 6..244 | 197 | 23.9 | Plus |
| Rbp9-PH | 439 | CG3151-PH | 103..427 | 20..337 | 196 | 21.9 | Plus |
| Rbp9-PG | 439 | CG3151-PG | 103..427 | 20..337 | 196 | 21.9 | Plus |
