BO15753.complete Sequence
2419 bp assembled on 2006-10-11
GenBank Submission: FJ633574
> BO15753.complete
GAAGTTATCAGTCGACATGCCCGATGACACGCAGGATGCCAAGGCGCAGA
AGTTGGCCGCGGCAAGGAAAAAGCTGAAGGAGTACCAGCAGCGCGCCAGC
AACAACAATGGGCAGCCGGGAGCAGAGGAGCCGGTGGCTGCCACCACGCA
ATCGCACTCGTCCACTGTGAGCATATCCAGCAATCTGTCGGAACGGTCAG
ACAGCGAGATAAATGTGAACGGTGGAGGAGCAGGTGGGACGCAGCCGCCG
GAGCAGTCTGCCCTGCCCACAGCCGCTTCTTATTTTGCCCAAAACGAGTC
GGAACACAATGGTGGACTGGCAGATGCCTCTAGCTTGCAGGCCATCCAGG
TGATCATCGCTGAAAAGGCCCAGCTCAATGCGGAGCTGACCAAGGTTCGC
CTGGCTTGCCGGGAGCGTGAGCTAGAGCTGGAGGAGCTTCGCATCCTCAA
GGATCAGAATCAATTGCGTCTGGAGCAGCTACAACAGCACTGCCAGGATC
AACAGTCGACCGGTGAGCAGCAGCGACAGCAGTACGCGCAACTCCAGGCA
CAACTGCTACAATCGCAGGCACAAATCAAGGACCAACAGTCGCATCTCAA
CGAACTAGAGGCCCAGCTAAAGCAGAGCAACCAGCATCAAGAGGAACTGC
AGCAACAGCTTTCCCAAAAATCGAACGAACTCGAGATGGCGCAGCTGAAG
CTGCGGCAGCTCTCAGACGAGTCTAGCGTCACCACAGACAACCGAGTGGA
GTCGCTGGTGCAAACACAATACATGTACGAGCAACAGATACGCGACCTCC
AAGCGATGGTGGGTCAACTAACGCAGGACAAGGAGCAGGCAGCTGGTCAG
TATCAAAACTATGTGCAGCATCAGAGTGGCGAGATCGCCAAGCTCAACGA
ACGAAACACAGAACTCTCAGAGGTACTGAACTCACTGAGGGAGCGAGAAC
GCCAGCTTGTGGAGCACGTGGGCGCCCTGGAGCGGGATATACAAAAGAAC
ATCAGCCTGCAGGCCCAATTTAAAGAGGCCAGTCAAGTGCAGCCATCCAA
GGAAGAAACCAGCGAGCAGAAAGCCTTAAAAGATGAACTGGCTGTCTTGA
AAGAGCAGATCGAAAACTTCGAGTTTGAGCGCCACGAATTCCAGCTGAAG
ATCAAGTCGCAGGACGATCAGCTGCAGTTAAAGAACTCGGCTTTAGACGA
GTTGGAAAAGCAACTCGAACGCTTGCAAGCTGAGCAGCCCGATCAGTCCA
AGCTGTTGGCCACCATGGAGTCAGACAAAGTGGCCGCATCGCGTGCCCTA
ACCCAGAATGTAGAGATGAAAAACCAGTTGGACGAACTGCAGCAGCGATT
TGTTCAGTTGACAAACGACAAAGCCGAGCTGGTCATCCGCTTGGATTCAG
AAGAGTTTGCCAACCGAGAAATCCGCCAGAACTACAACAGCATGGAGCAA
AAGCTTCAAGCAAATGAGGAGCGCTTTAAGTTCAAGGATGAGGAAATGAT
TAGACTATCGCACGAGAACGTGGAACTACAACGTCAGCAGTTAATGTTGC
AACAGCAGCTGGACCGTCTCAGGCATTATGAGGCAAAAGCTTATCACGCC
GGTGAGGAAACCGAAAAAGAGAATGGAGCAGATGCACCGGAAAACGAAGC
AGAGGAAGCGAAGGAAGTTGGTCTTTTGCATAATCATTCGCACGATCACT
CTCATCAGCATTCCGACGGTCATTGTCATGATAATGACCACGATCATTCC
CATGAACATAACCATCATAATGCTGGTGATCATGGTCATCCACATGATCA
TCCGCACGATCACACACATGATCATTCACATAGCCATCCACACGATCATC
AGCATGATCATCCACATGATCACGGCCAGAACCACGCCCACAGACAAGCA
GCTGAAACGCTGCCCACCGCCGAGGCCGTGGAACGCTTGCAATCGCGTTT
CACCACACTGATCAGCCAGGTCGCCGACTTGACGGAGGAGAAGCACAGCC
TGGAGCATCTGGTGCTCCAGCTGCAGAGCGAAACCGAAACGATTGGCGAG
TACATTGCCCTCTATCAAACGCAGAGGCGCATGCTAAAGCAGCGTGAGTA
CGAGAAGGCCGCCCAAATGCGTCTCTTGCAAGCGGAGCGAGAGCAGCTGC
GCGAGAAGATTGAGGCACTAAACAAGCTGGTGGTCAGTTTGGGCGTGGAG
CTACCCGCAGATGCCGCCCAGGCAAAGCAACCAGAAGCGGCCGCAGGTAG
CGAACACACTCCTGGCGAAGGTGAAAACTCGCAACAGATCATCAACAAGA
TACAGGACATTATCAGCGAGATCAAGGAGAACACGGAGCAGCCAAGCCAC
AACCATGCAGGAGACCATCTCAACTGTTGTATGGGCAAGTTCGAGGTAGT
CGCAAGCTTTCTAGACCAT
BO15753.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:54:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GM130-RA | 2388 | CG11061-PA | 1..2385 | 17..2401 | 11925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:54:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GM130-RA | 2721 | CG11061-RA | 138..2525 | 14..2401 | 11940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:54:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22126209..22127206 | 1069..72 | 4990 | 100 | Minus |
| 2R | 25286936 | 2R | 22124763..22125583 | 2401..1581 | 4105 | 100 | Minus |
| 2R | 25286936 | 2R | 22125640..22126156 | 1583..1067 | 2585 | 100 | Minus |
| 2R | 25286936 | 2R | 22127306..22127365 | 73..14 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:54:45 has no hits.
BO15753.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:31:42 Download gff for
BO15753.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GM130-RA | 1..2388 | 17..2405 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:49:34 Download gff for
BO15753.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GM130-RA | 131..2523 | 10..2405 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:06:03 Download gff for
BO15753.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GM130-RA | 141..2525 | 17..2403 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:31:43 Download gff for
BO15753.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GM130-RA | 131..2523 | 10..2405 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:51:38 Download gff for
BO15753.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GM130-RA | 141..2525 | 17..2403 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:51:38 Download gff for
BO15753.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22124761..22125581 | 1583..2403 | 99 | <- | Minus |
| 2R | 22125641..22126153 | 1070..1582 | 100 | <- | Minus |
| 2R | 22126209..22127204 | 74..1069 | 100 | <- | Minus |
| 2R | 22127306..22127362 | 17..73 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:06:03 Download gff for
BO15753.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18012266..18013086 | 1583..2403 | 99 | <- | Minus |
| arm_2R | 18013146..18013658 | 1070..1582 | 100 | <- | Minus |
| arm_2R | 18013714..18014709 | 74..1069 | 100 | <- | Minus |
| arm_2R | 18014811..18014867 | 17..73 | 100 | | Minus |
BO15753.pep Sequence
Translation from 16 to 2419
> BO15753.pep
MPDDTQDAKAQKLAAARKKLKEYQQRASNNNGQPGAEEPVAATTQSHSST
VSISSNLSERSDSEINVNGGGAGGTQPPEQSALPTAASYFAQNESEHNGG
LADASSLQAIQVIIAEKAQLNAELTKVRLACRERELELEELRILKDQNQL
RLEQLQQHCQDQQSTGEQQRQQYAQLQAQLLQSQAQIKDQQSHLNELEAQ
LKQSNQHQEELQQQLSQKSNELEMAQLKLRQLSDESSVTTDNRVESLVQT
QYMYEQQIRDLQAMVGQLTQDKEQAAGQYQNYVQHQSGEIAKLNERNTEL
SEVLNSLRERERQLVEHVGALERDIQKNISLQAQFKEASQVQPSKEETSE
QKALKDELAVLKEQIENFEFERHEFQLKIKSQDDQLQLKNSALDELEKQL
ERLQAEQPDQSKLLATMESDKVAASRALTQNVEMKNQLDELQQRFVQLTN
DKAELVIRLDSEEFANREIRQNYNSMEQKLQANEERFKFKDEEMIRLSHE
NVELQRQQLMLQQQLDRLRHYEAKAYHAGEETEKENGADAPENEAEEAKE
VGLLHNHSHDHSHQHSDGHCHDNDHDHSHEHNHHNAGDHGHPHDHPHDHT
HDHSHSHPHDHQHDHPHDHGQNHAHRQAAETLPTAEAVERLQSRFTTLIS
QVADLTEEKHSLEHLVLQLQSETETIGEYIALYQTQRRMLKQREYEKAAQ
MRLLQAEREQLREKIEALNKLVVSLGVELPADAAQAKQPEAAAGSEHTPG
EGENSQQIINKIQDIISEIKENTEQPSHNHAGDHLNCCMGKFEVVASFLD
H
BO15753.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:54:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GM130-PA | 795 | CG11061-PA | 1..795 | 1..795 | 4062 | 100 | Plus |
| lva-PD | 2779 | CG6450-PD | 830..1465 | 114..783 | 260 | 20.6 | Plus |
| CLIP-190-PN | 1598 | CG5020-PN | 587..1017 | 116..534 | 239 | 23.7 | Plus |
| CLIP-190-PR | 1601 | CG5020-PR | 590..1020 | 116..534 | 239 | 23.7 | Plus |
| CLIP-190-PP | 1623 | CG5020-PP | 612..1042 | 116..534 | 239 | 23.7 | Plus |
| lva-PD | 2779 | CG6450-PD | 976..1669 | 107..718 | 207 | 20.8 | Plus |
| CLIP-190-PN | 1598 | CG5020-PN | 1053..1470 | 92..533 | 205 | 21.9 | Plus |
| CLIP-190-PR | 1601 | CG5020-PR | 1056..1473 | 92..533 | 205 | 21.9 | Plus |
| lva-PD | 2779 | CG6450-PD | 1961..2370 | 162..551 | 202 | 22.8 | Plus |
| CLIP-190-PN | 1598 | CG5020-PN | 665..1209 | 110..537 | 189 | 19.9 | Plus |
| CLIP-190-PR | 1601 | CG5020-PR | 668..1212 | 110..537 | 189 | 19.9 | Plus |
| lva-PD | 2779 | CG6450-PD | 1284..1731 | 105..527 | 188 | 22.5 | Plus |
| CLIP-190-PR | 1601 | CG5020-PR | 259..727 | 101..546 | 183 | 20.7 | Plus |
| lva-PD | 2779 | CG6450-PD | 351..1116 | 87..774 | 178 | 20.9 | Plus |
| CLIP-190-PN | 1598 | CG5020-PN | 708..1324 | 6..560 | 178 | 19.9 | Plus |
| CLIP-190-PR | 1601 | CG5020-PR | 711..1327 | 6..560 | 178 | 19.9 | Plus |
| CLIP-190-PN | 1598 | CG5020-PN | 234..724 | 101..546 | 176 | 22.7 | Plus |
| CLIP-190-PN | 1598 | CG5020-PN | 483..980 | 117..553 | 170 | 19.2 | Plus |
| CLIP-190-PR | 1601 | CG5020-PR | 486..983 | 117..553 | 170 | 19.2 | Plus |
