BO15754.complete Sequence
1837 bp assembled on 2007-10-05
GenBank Submission: FJ633575
> BO15754.complete
GAAGTTATCAGTCGACATGCGAAAGACCCGCTCTCAGACGGCTCGCACGC
AGGCGGAAAATGCCGCAACATCTTCGAGCCCCGGGCACCAGTCGACTTCG
TCAGCGCCAATAGCAGTTAATCCCTTTGATTCCACCAAGTACAAGGAATG
TGAGCAAATGGTGCAGATGCTTCGAGTGGTCGAGCTGCAAAAAATCCTGT
CGTTTCTGAACATCTCATTCGCTGGACGAAAAACTGACCTGCAGAGCCGC
ATCCTCTCGTTCTTGCGCACCAACTTGGAACTGCTTGCCCCGAAGGTCCA
GGAAGTCTACGCCCAGTCCGTGCAGGAACAAAACGCCACGCTGCAGTACA
TCGACCCAACCAGGATGTACTCGCACATCCAGCTGCCGCCCACCGTGCAG
CCCAATCCCGTGGGCCTCGTGGGCAGCGGCCAAGGTGTGCAAGTGCCCGG
CGGCCAGATGAATGTGGTCGGCGGCGCACCCTTCCTCCACACACACAGCA
TCAACAGCCAGCTGCCTATTCACCCCGATGTGCGGCTGAAAAAGCTAGCC
TTCTACGATGTACTCGGAACGCTAATTAAGCCTTCAACTCTGGTGCCACG
CAACACTCAGCGCGTCCAAGAGGTGCCTTTCTACTTCACGCTCACGCCGC
AGCAGGCCACCGAGATTGCCTCTAATCGCGACATTCGCAACAGCTCCAAG
GTGGAGCACGCCATTCAGGTTCAACTGCGCTTTTGCCTGGTGGAGACTTC
GTGCGACCAGGAGGACTGCTTCCCGCCGAACGTAAACGTCAAAGTGAACA
ACAAACTCTGTCAGCTGCCTAATGTCATTCCTACAAACCGACCAAATGTG
GAGCCCAAGCGTCCGCCGCGACCCGTTAATGTCACGTCCAATGTAAAGCT
GTCGCCTACCGTCACCAACACCATAACGGTTCAGTGGTGTCCGGACTACA
CTCGTAGCTACTGTCTGGCCGTATACCTGGTAAAGAAGCTCACCTCAACA
CAGCTTTTGCAGCGAATGAAGACGAAGGGCGTAAAACCAGCGGACTACAC
GCGAGGCTTAATCAAAGAGAAGCTGACTGAGGATGCTGACTGCGAAATAG
CCACCACTATGCTGAAGGTTTCCCTTAACTGCCCGTTGGGCAAGATGAAA
ATGTTGCTGCCTTGTCGAGCATCAACCTGCTCGCATCTGCAATGCTTCGA
TGCCAGTCTCTACCTGCAAATGAATGAGCGTAAGCCCACGTGGAACTGCC
CTGTATGCGACAAGCCGGCCATTTATGACAACCTGGTCATAGATGGCTAC
TTCCAGGAGGTGTTGGGCTCGTCGCTTCTAAAGAGTGATGATACTGAGAT
TCAACTTCATCAGGATGGATCTTGGAGCACACCAGGACTACGGAGCGAGA
CGCAGATCCTTGATACGCCTTCAAAGCCCGCCCAAAAGGTTGAGGTTATA
TCGGATGACATAGAACTTATCTCGGATGACGCCAAGCCAGTAAAGAGGGA
TTTGTCCCCAGCACAGGACGAACAGCCCACATCAACGTCAAACAGTGAAA
CTGTTGACCTAACGTTAAGCGATTCAGACGACGACATGCCGCTGGCTAAG
CGTCGTCCGCCCGCCAAGCAAGCCGTCGCCAGTTCCACGTCGAACGGCAG
CGGTGGCGGCCAACGTGCCTATACCCCGGCACAGCAGCCCCAGCAATCCG
GTGGTAATGTTTTTAAAAAACCTCAGAAAGCGGAGGAGCTTTACAAGCGT
GTTCATTTAGGAGTTTGGCTGCGCCCACGAAAACCCAAGCCAGAGAGCTC
AAGGCGCCCAAACGTCGGCGCAAGCTTTCTAGACCAT
BO15754.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:33:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Su(var)2-10-RD | 1806 | CG8068-PD | 1..1803 | 17..1819 | 9015 | 100 | Plus |
| Su(var)2-10-RH | 1710 | CG8068-PH | 1..1686 | 17..1702 | 8430 | 100 | Plus |
| Su(var)2-10-RM | 1713 | CG8068-PM | 1..1685 | 17..1701 | 8425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:33:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Su(var)2-10-RD | 2159 | CG8068-RD | 202..2004 | 17..1819 | 9015 | 100 | Plus |
| Su(var)2-10-RH | 2943 | CG8068-RH | 202..1887 | 17..1702 | 8430 | 100 | Plus |
| Su(var)2-10-RM | 2149 | CG8068-RM | 202..1886 | 17..1701 | 8425 | 100 | Plus |
| Su(var)2-10-RH | 2943 | CG8068-RH | 2590..2669 | 1700..1779 | 400 | 100 | Plus |
| Su(var)2-10-RH | 2943 | CG8068-RH | 2748..2788 | 1779..1819 | 205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:33:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9117176..9117852 | 144..820 | 3385 | 100 | Plus |
| 2R | 25286936 | 2R | 9117917..9118157 | 821..1061 | 1205 | 100 | Plus |
| 2R | 25286936 | 2R | 9118215..9118449 | 1062..1296 | 1175 | 100 | Plus |
| 2R | 25286936 | 2R | 9118505..9118672 | 1296..1463 | 840 | 100 | Plus |
| 2R | 25286936 | 2R | 9118900..9119049 | 1553..1702 | 750 | 100 | Plus |
| 2R | 25286936 | 2R | 9116323..9116457 | 17..151 | 660 | 99.3 | Plus |
| 2R | 25286936 | 2R | 9118737..9118829 | 1462..1554 | 465 | 100 | Plus |
| 2R | 25286936 | 2R | 9119752..9119831 | 1700..1779 | 400 | 100 | Plus |
| 2R | 25286936 | 2R | 9119910..9119950 | 1779..1819 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:33:19 has no hits.
BO15754.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:03:57 Download gff for
BO15754.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(var)2-10-RD | 1..1806 | 17..1823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:17:51 Download gff for
BO15754.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(var)2-10-RD | 192..2005 | 7..1825 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:19:14 Download gff for
BO15754.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(var)2-10-RD | 202..2004 | 17..1821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:03:57 Download gff for
BO15754.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(var)2-10-RD | 192..2005 | 7..1825 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:24:54 Download gff for
BO15754.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(var)2-10-RD | 202..2004 | 17..1821 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:24:54 Download gff for
BO15754.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9116323..9116451 | 17..145 | 100 | -> | Plus |
| 2R | 9117178..9117852 | 146..820 | 100 | -> | Plus |
| 2R | 9117917..9118157 | 821..1061 | 100 | -> | Plus |
| 2R | 9118215..9118449 | 1062..1296 | 100 | -> | Plus |
| 2R | 9118506..9118672 | 1297..1463 | 100 | -> | Plus |
| 2R | 9118739..9118827 | 1464..1552 | 100 | -> | Plus |
| 2R | 9118900..9119047 | 1553..1700 | 100 | -> | Plus |
| 2R | 9119753..9119831 | 1701..1779 | 100 | -> | Plus |
| 2R | 9119911..9119950 | 1780..1821 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:19:14 Download gff for
BO15754.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5006244..5006332 | 1464..1552 | 100 | -> | Plus |
| arm_2R | 5006405..5006552 | 1553..1700 | 100 | -> | Plus |
| arm_2R | 5007258..5007336 | 1701..1779 | 100 | -> | Plus |
| arm_2R | 5007416..5007455 | 1780..1821 | 95 | | Plus |
| arm_2R | 5003828..5003956 | 17..145 | 100 | -> | Plus |
| arm_2R | 5004683..5005357 | 146..820 | 100 | -> | Plus |
| arm_2R | 5005422..5005662 | 821..1061 | 100 | -> | Plus |
| arm_2R | 5005720..5005954 | 1062..1296 | 100 | -> | Plus |
| arm_2R | 5006011..5006177 | 1297..1463 | 100 | -> | Plus |
BO15754.pep Sequence
Translation from 16 to 1837
> BO15754.pep
MRKTRSQTARTQAENAATSSSPGHQSTSSAPIAVNPFDSTKYKECEQMVQ
MLRVVELQKILSFLNISFAGRKTDLQSRILSFLRTNLELLAPKVQEVYAQ
SVQEQNATLQYIDPTRMYSHIQLPPTVQPNPVGLVGSGQGVQVPGGQMNV
VGGAPFLHTHSINSQLPIHPDVRLKKLAFYDVLGTLIKPSTLVPRNTQRV
QEVPFYFTLTPQQATEIASNRDIRNSSKVEHAIQVQLRFCLVETSCDQED
CFPPNVNVKVNNKLCQLPNVIPTNRPNVEPKRPPRPVNVTSNVKLSPTVT
NTITVQWCPDYTRSYCLAVYLVKKLTSTQLLQRMKTKGVKPADYTRGLIK
EKLTEDADCEIATTMLKVSLNCPLGKMKMLLPCRASTCSHLQCFDASLYL
QMNERKPTWNCPVCDKPAIYDNLVIDGYFQEVLGSSLLKSDDTEIQLHQD
GSWSTPGLRSETQILDTPSKPAQKVEVISDDIELISDDAKPVKRDLSPAQ
DEQPTSTSNSETVDLTLSDSDDDMPLAKRRPPAKQAVASSTSNGSGGGQR
AYTPAQQPQQSGGNVFKKPQKAEELYKRVHLGVWLRPRKPKPESSRRPNV
GASFLDH
BO15754.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:24:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Su(var)2-10-PD | 601 | CG8068-PD | 1..601 | 1..601 | 3130 | 100 | Plus |
| Su(var)2-10-PM | 570 | CG8068-PM | 1..562 | 1..562 | 2918 | 100 | Plus |
| Su(var)2-10-PL | 584 | CG8068-PL | 1..574 | 1..574 | 2918 | 98.4 | Plus |
| Su(var)2-10-PC | 565 | CG8068-PC | 2..565 | 36..601 | 2918 | 99.1 | Plus |
| Su(var)2-10-PH | 569 | CG8068-PH | 1..562 | 1..562 | 2918 | 100 | Plus |
