BO15771.complete Sequence
1483 bp (1483 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633577
> BO15771.complete
GAAGTTATCAGTCGACATGGCCGACAGCGAATTCGAGGAGTTCCACAGGC
CCATATTTGAGCCACATACGATTGCTGGATTCGGATCAGGAGCAGGCAGC
AAGAAGAATAATCCACATGCATTTTACTCCTTAATTCCCAACGATGACCT
GGAGGACTCGCACTCCTCGAAGAGCGATGGCGACGGTTCGGATCAGGAGG
ATGGCATTGGTCTTGTGGATCACGAGCCCAAGATGCGTCAAGTGGAGGAC
GATGAGCTGGGCGACGGGCTGAAAGTCACTCTGTCCTCGGACGGCTCGCT
GGACACCAACGACTCGTTTAATTCGCACCGACATCATCCGTTGAACCACC
AGGATGCGATTGGTGGCTTCCTGGGCATGGACACCAGTGGATTGGGTGGC
AATAGTGCACCTGTGACCATTGGAGCCAGCACAGATCTGCTGGCACCCAA
TACAGCTGCCACGCGACGTCGTCGCAAGTTGCCGGAAATACCGAAAAACA
AGAAATGTGGCTCCAACTTTGGCTCCCTGGCGGATGAGTTCCGCAACGGT
GGTGGTGGAGGAATCCCTCCAGCAGTTCGCAGTGGACAACAGCGCTCATT
TCTGTCCCTCAAATGCGGCTACTTGATGGACGAGGACTCCAGTCCGGATT
CGGAAAGGATGCAGAGTCTGGGCGACGTGGACAGTGGTCACAGCACGGCG
CATTCGCCCAACGACTTTAAGAGCATGTCGCCGCAGATCACGTCTCCCGT
TTCGCAGTCCCCCTTTCCGCCTCCCTTTGGGGGCGTGCCCTTTGGCCAGC
TGGAGATGCTGGAGGCCACTCACCGTGGTCTGCACAAGTTTGTGCCGCGG
CACCACGACGAGATCGAGCTGGAGATCGGCGACGCCATCTACGTGCAAAA
GGAGGCCGAGGACCTGTGGTGCGAGGGTGTGAATCTCCGCACCGGAAGGC
AGGGCATCTTCCCCTCGGCCTACGCCGTGGACCTGGACTACAACGAGTTC
GATCCCACAGTGCAGCTGGTGAAGAAGGAGCGCTATCTGCTGGGCTACCT
CGGATCCGTGGAGACGCTGGCGCACAAGGGCACCGGAGTCGTTTGCCAGG
CGGTGCGCAAGATTGTCGGGGAGTACGGCAACTCACCGACCGGACAGACG
TGCATCCTGGAGGTTTCCGACCAGGGACTTCGCATGGTGGATCGATCGGG
CCCGAATCAAAACAAAAAGGACAAGAAACCTTGCATCGACTACTTCTACT
CCCTGAAGAACGTCTCCTTCTGCGCATTTCACCCTCGCGATCACCGCTTC
ATTGGCTTCATCACCAAACATCCCACGGTTCAGCGGTTCGCCTGCCACGT
CTTCAAGGGCTCGGAGTCGACCAGACCGGTGGCCGAGGCAGTGGGCCGTG
CTTTCCAGCGATTCTATCAGAAATTCATTGAAACCGCTTATCCCATCGAG
GACATCTACATTGAGGCAAGCTTTCTAGACCAT
BO15771.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:41:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aplip1-RA | 1452 | CG1200-PA | 1..1449 | 17..1465 | 7245 | 100 | Plus |
| Aplip1-RB | 1473 | CG1200-PB | 1..1470 | 17..1465 | 7000 | 98.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:41:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aplip1-RA | 2390 | CG1200-RA | 223..1675 | 13..1465 | 7265 | 100 | Plus |
| Aplip1-RB | 2411 | CG1200-RB | 223..1696 | 13..1465 | 7020 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:41:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1197530..1198230 | 507..1207 | 3505 | 100 | Plus |
| 3L | 28110227 | 3L | 1196937..1197315 | 130..508 | 1895 | 100 | Plus |
| 3L | 28110227 | 3L | 1198299..1198486 | 1208..1395 | 940 | 100 | Plus |
| 3L | 28110227 | 3L | 1196539..1196655 | 13..129 | 585 | 100 | Plus |
| 3L | 28110227 | 3L | 1198554..1198624 | 1395..1465 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:41:23 has no hits.
BO15771.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:52:22 Download gff for
BO15771.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aplip1-RA | 1..1452 | 17..1466 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:08:06 Download gff for
BO15771.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aplip1-RA | 215..1683 | 9..1478 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:01:14 Download gff for
BO15771.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aplip1-RA | 227..1675 | 17..1467 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:52:22 Download gff for
BO15771.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aplip1-RA | 215..1683 | 9..1478 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:24:45 Download gff for
BO15771.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Aplip1-RA | 227..1675 | 17..1467 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:24:45 Download gff for
BO15771.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1196543..1196655 | 17..129 | 100 | -> | Plus |
| 3L | 1196937..1197313 | 130..506 | 100 | -> | Plus |
| 3L | 1197530..1198230 | 507..1207 | 100 | -> | Plus |
| 3L | 1198299..1198486 | 1208..1395 | 100 | -> | Plus |
| 3L | 1198555..1198624 | 1396..1467 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:01:14 Download gff for
BO15771.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1196543..1196655 | 17..129 | 100 | -> | Plus |
| arm_3L | 1196937..1197313 | 130..506 | 100 | -> | Plus |
| arm_3L | 1197530..1198230 | 507..1207 | 100 | -> | Plus |
| arm_3L | 1198299..1198486 | 1208..1395 | 100 | -> | Plus |
| arm_3L | 1198555..1198624 | 1396..1467 | 97 | | Plus |
BO15771.pep Sequence
Translation from 16 to 1483
> BO15771.pep
MADSEFEEFHRPIFEPHTIAGFGSGAGSKKNNPHAFYSLIPNDDLEDSHS
SKSDGDGSDQEDGIGLVDHEPKMRQVEDDELGDGLKVTLSSDGSLDTNDS
FNSHRHHPLNHQDAIGGFLGMDTSGLGGNSAPVTIGASTDLLAPNTAATR
RRRKLPEIPKNKKCGSNFGSLADEFRNGGGGGIPPAVRSGQQRSFLSLKC
GYLMDEDSSPDSERMQSLGDVDSGHSTAHSPNDFKSMSPQITSPVSQSPF
PPPFGGVPFGQLEMLEATHRGLHKFVPRHHDEIELEIGDAIYVQKEAEDL
WCEGVNLRTGRQGIFPSAYAVDLDYNEFDPTVQLVKKERYLLGYLGSVET
LAHKGTGVVCQAVRKIVGEYGNSPTGQTCILEVSDQGLRMVDRSGPNQNK
KDKKPCIDYFYSLKNVSFCAFHPRDHRFIGFITKHPTVQRFACHVFKGSE
STRPVAEAVGRAFQRFYQKFIETAYPIEDIYIEASFLDH
BO15771.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:01:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Aplip1-PA | 483 | CG1200-PA | 1..483 | 1..483 | 2582 | 100 | Plus |
| Aplip1-PB | 490 | CG1200-PB | 1..490 | 1..483 | 2554 | 98.4 | Plus |
