Clone BO15772 Report

Search the DGRC for BO15772

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:157
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptTotA-RA
Protein status:BO15772.pep: validated full length
Sequenced Size:421

Clone Sequence Records

BO15772.3prime Sequence

419 bp (419 high quality bases) assembled on 2006-05-30

> BO15772.3prime
ATGGTCTAGAAAGCTTGCACCAGTGAATAATTGAGCAAGCTTTGAACCCA
ATTCTTCAAAGAATCCAGTTGCAAGGCCCTTCACACCTGGAGATACAATC
TTTCCAACGATCCTCGCCTTTCGACCTCCCTGAATCGGAACTCCATCGAT
TATAATGGCATCCGTATGCTCGTTGACGAACTTATCGATACTCTCCCGTT
CCTCAGGGGTCAAACTGGGATATAAACGCCTATAGATGTCAAGTAGTTCC
TGGGTGCTATTGATTTTGGAGTCATCGTCCTGGGCGTTTTTGATAATTTC
AGCAATTCTAAGGTTGTCAGCCTCACGATCTTCGTCGGAATAGCCCATGC
ATAGAGGACTAATCAGCAGCAGTGCAAAGCACATAAGAGCAGTTGAAGAA
TTCATGTCGACTGATAACT

BO15772.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:40:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG31509-PA 390 TotA-RA 1..387 405..19 1935 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:35:43
Subject Length Description Subject Range Query Range Score Percent Strand
TotA-RA 579 CG31509-RA 42..428 405..19 1935 100 Minus
TotC-RA 530 CG31508-RA 69..398 381..52 390 75.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:35:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20871186..20871549 382..19 1820 100 Minus
3R 32079331 3R 20873119..20873448 381..52 390 74.5 Minus
Blast to na_te.dros performed on 2015-02-12 11:35:41 has no hits.

BO15772.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:54:00 Download gff for BO15772.3prime
Subject Subject Range Query Range Percent Splice Strand
TotA-PA 1..390 15..405 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:58:59 Download gff for BO15772.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31509-PA 1..390 15..405 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:51:19 Download gff for BO15772.3prime
Subject Subject Range Query Range Percent Splice Strand
TotA-RA 42..435 11..405 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:46:25 Download gff for BO15772.3prime
Subject Subject Range Query Range Percent Splice Strand
TotA-RA 42..435 11..405 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:46:25 Download gff for BO15772.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 20871077..20871099 383..405 100 -> Minus
3R 20871186..20871556 11..382 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:51:19 Download gff for BO15772.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16696799..16696821 383..405 100 -> Minus
arm_3R 16696908..16697278 11..382 98   Minus

BO15772.5prime Sequence

419 bp (419 high quality bases) assembled on 2006-05-30

> BO15772.5prime
GAAGTTATCAGTCGACATGAATTCTTCAACTGCTCTTATGTGCTTTGCAC
TGCTGCTGATTAGTCCTCTATGCATGGGCTATTCCGACGAAGATCGTGAG
GCTGACAACCTTAGAATTGCTGAAATTATCAAAAACGCCCAGGACGATGA
CTCCAAAATCAATAGCACCCAGGAACTACTTGACATCTATAGGCGTTTAT
ATCCCAGTTTGACCCCTGAGGAACGGGAGAGTATCGATAAGTTCGTCAAC
GAGCATACGGATGCCATTATAATCGATGGAGTTCCGATTCAGGGAGGTCG
AAAGGCGAGGATCGTTGGAAAGATTGTATCTCCAGGTGTGAAGGGCCTTG
CAACTGGATTCTTTGAAGAATTGGGTTCAAAGCTTGCTCAATTATTCACT
GGTGCAAGCTTTCTAGACC

BO15772.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:40:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG31509-PA 390 TotA-RA 1..387 17..403 1935 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 07:31:28
Subject Length Description Subject Range Query Range Score Percent Strand
TotA-RA 579 CG31509-RA 42..428 17..403 1935 100 Plus
TotC-RA 530 CG31508-RA 69..398 41..370 390 75.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 07:31:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20871186..20871549 40..403 1820 100 Plus
3R 32079331 3R 20873119..20873448 41..370 390 74.5 Plus
Blast to na_te.dros performed on 2015-02-02 07:31:24 has no hits.

BO15772.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:54:01 Download gff for BO15772.5prime
Subject Subject Range Query Range Percent Splice Strand
TotA-PA 1..390 17..407 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:59:00 Download gff for BO15772.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31509-PA 1..390 17..407 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:43:48 Download gff for BO15772.5prime
Subject Subject Range Query Range Percent Splice Strand
TotA-RA 42..435 17..411 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:13:11 Download gff for BO15772.5prime
Subject Subject Range Query Range Percent Splice Strand
TotA-RA 42..435 17..411 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 09:13:11 Download gff for BO15772.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20871077..20871099 17..39 100 -> Plus
3R 20871186..20871556 40..411 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:43:48 Download gff for BO15772.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16696799..16696821 17..39 100 -> Plus
arm_3R 16696908..16697278 40..411 98   Plus

BO15772.complete Sequence

421 bp (421 high quality bases) assembled on 2006-08-24

GenBank Submission: FJ633578

> BO15772.complete
GAAGTTATCAGTCGACATGAATTCTTCAACTGCTCTTATGTGCTTTGCAC
TGCTGCTGATTAGTCCTCTATGCATGGGCTATTCCGACGAAGATCGTGAG
GCTGACAACCTTAGAATTGCTGAAATTATCAAAAACGCCCAGGACGATGA
CTCCAAAATCAATAGCACCCAGGAACTACTTGACATCTATAGGCGTTTAT
ATCCCAGTTTGACCCCTGAGGAACGGGAGAGTATCGATAAGTTCGTCAAC
GAGCATACGGATGCCATTATAATCGATGGAGTTCCGATTCAGGGAGGTCG
AAAGGCGAGGATCGTTGGAAAGATTGTATCTCCAGGTGTGAAGGGCCTTG
CAACTGGATTCTTTGAAGAATTGGGTTCAAAGCTTGCTCAATTATTCACT
GGTGCAAGCTTTCTAGACCAT

BO15772.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:48:05
Subject Length Description Subject Range Query Range Score Percent Strand
TotA-RA 390 CG31509-PA 1..387 17..403 1935 100 Plus
TotC-RA 390 CG31508-PA 25..354 41..370 390 74.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:48:07
Subject Length Description Subject Range Query Range Score Percent Strand
TotA-RA 579 CG31509-RA 42..428 17..403 1935 100 Plus
TotC-RA 530 CG31508-RA 69..398 41..370 390 74.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:48:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20871186..20871549 40..403 1820 100 Plus
3R 32079331 3R 20873119..20873448 41..370 390 74.5 Plus
Blast to na_te.dros performed on 2014-11-28 00:48:04 has no hits.

BO15772.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:23:31 Download gff for BO15772.complete
Subject Subject Range Query Range Percent Splice Strand
TotA-RA 1..390 17..407 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:54:48 Download gff for BO15772.complete
Subject Subject Range Query Range Percent Splice Strand
TotA-RA 42..435 17..411 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:31:46 Download gff for BO15772.complete
Subject Subject Range Query Range Percent Splice Strand
TotA-RA 42..428 17..405 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:23:31 Download gff for BO15772.complete
Subject Subject Range Query Range Percent Splice Strand
TotA-RA 42..435 17..411 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:38:09 Download gff for BO15772.complete
Subject Subject Range Query Range Percent Splice Strand
TotA-RA 42..428 17..405 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:38:09 Download gff for BO15772.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20871077..20871099 17..39 100 -> Plus
3R 20871186..20871549 40..405 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:31:46 Download gff for BO15772.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16696799..16696821 17..39 100 -> Plus
arm_3R 16696908..16697271 40..405 99   Plus

BO15772.pep Sequence

Translation from 16 to 421

> BO15772.pep
MNSSTALMCFALLLISPLCMGYSDEDREADNLRIAEIIKNAQDDDSKINS
TQELLDIYRRLYPSLTPEERESIDKFVNEHTDAIIIDGVPIQGGRKARIV
GKIVSPGVKGLATGFFEELGSKLAQLFTGASFLDH

BO15772.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:48:14
Subject Length Description Subject Range Query Range Score Percent Strand
TotA-PA 129 CG31509-PA 1..129 1..129 651 100 Plus
TotC-PA 129 CG31508-PA 1..129 1..129 461 65.9 Plus
TotB-PA 138 CG5609-PA 1..127 1..128 348 52.3 Plus