Clone Sequence Records
BO15772.3prime Sequence
419 bp (419 high quality bases) assembled on 2006-05-30
> BO15772.3prime
ATGGTCTAGAAAGCTTGCACCAGTGAATAATTGAGCAAGCTTTGAACCCA
ATTCTTCAAAGAATCCAGTTGCAAGGCCCTTCACACCTGGAGATACAATC
TTTCCAACGATCCTCGCCTTTCGACCTCCCTGAATCGGAACTCCATCGAT
TATAATGGCATCCGTATGCTCGTTGACGAACTTATCGATACTCTCCCGTT
CCTCAGGGGTCAAACTGGGATATAAACGCCTATAGATGTCAAGTAGTTCC
TGGGTGCTATTGATTTTGGAGTCATCGTCCTGGGCGTTTTTGATAATTTC
AGCAATTCTAAGGTTGTCAGCCTCACGATCTTCGTCGGAATAGCCCATGC
ATAGAGGACTAATCAGCAGCAGTGCAAAGCACATAAGAGCAGTTGAAGAA
TTCATGTCGACTGATAACT
BO15772.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:40:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31509-PA | 390 | TotA-RA | 1..387 | 405..19 | 1935 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:35:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TotA-RA | 579 | CG31509-RA | 42..428 | 405..19 | 1935 | 100 | Minus |
TotC-RA | 530 | CG31508-RA | 69..398 | 381..52 | 390 | 75.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:35:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20871186..20871549 | 382..19 | 1820 | 100 | Minus |
3R | 32079331 | 3R | 20873119..20873448 | 381..52 | 390 | 74.5 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:35:41 has no hits.
BO15772.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:54:00 Download gff for
BO15772.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotA-PA | 1..390 | 15..405 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:58:59 Download gff for
BO15772.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31509-PA | 1..390 | 15..405 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:51:19 Download gff for
BO15772.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotA-RA | 42..435 | 11..405 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:46:25 Download gff for
BO15772.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotA-RA | 42..435 | 11..405 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:46:25 Download gff for
BO15772.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20871077..20871099 | 383..405 | 100 | -> | Minus |
3R | 20871186..20871556 | 11..382 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:51:19 Download gff for
BO15772.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16696799..16696821 | 383..405 | 100 | -> | Minus |
arm_3R | 16696908..16697278 | 11..382 | 98 | | Minus |
BO15772.5prime Sequence
419 bp (419 high quality bases) assembled on 2006-05-30
> BO15772.5prime
GAAGTTATCAGTCGACATGAATTCTTCAACTGCTCTTATGTGCTTTGCAC
TGCTGCTGATTAGTCCTCTATGCATGGGCTATTCCGACGAAGATCGTGAG
GCTGACAACCTTAGAATTGCTGAAATTATCAAAAACGCCCAGGACGATGA
CTCCAAAATCAATAGCACCCAGGAACTACTTGACATCTATAGGCGTTTAT
ATCCCAGTTTGACCCCTGAGGAACGGGAGAGTATCGATAAGTTCGTCAAC
GAGCATACGGATGCCATTATAATCGATGGAGTTCCGATTCAGGGAGGTCG
AAAGGCGAGGATCGTTGGAAAGATTGTATCTCCAGGTGTGAAGGGCCTTG
CAACTGGATTCTTTGAAGAATTGGGTTCAAAGCTTGCTCAATTATTCACT
GGTGCAAGCTTTCTAGACC
BO15772.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:40:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31509-PA | 390 | TotA-RA | 1..387 | 17..403 | 1935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 07:31:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TotA-RA | 579 | CG31509-RA | 42..428 | 17..403 | 1935 | 100 | Plus |
TotC-RA | 530 | CG31508-RA | 69..398 | 41..370 | 390 | 75.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 07:31:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20871186..20871549 | 40..403 | 1820 | 100 | Plus |
3R | 32079331 | 3R | 20873119..20873448 | 41..370 | 390 | 74.5 | Plus |
Blast to na_te.dros performed on 2015-02-02 07:31:24 has no hits.
BO15772.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:54:01 Download gff for
BO15772.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotA-PA | 1..390 | 17..407 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:59:00 Download gff for
BO15772.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31509-PA | 1..390 | 17..407 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:43:48 Download gff for
BO15772.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotA-RA | 42..435 | 17..411 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:13:11 Download gff for
BO15772.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotA-RA | 42..435 | 17..411 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 09:13:11 Download gff for
BO15772.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20871077..20871099 | 17..39 | 100 | -> | Plus |
3R | 20871186..20871556 | 40..411 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:43:48 Download gff for
BO15772.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16696799..16696821 | 17..39 | 100 | -> | Plus |
arm_3R | 16696908..16697278 | 40..411 | 98 | | Plus |
BO15772.complete Sequence
421 bp (421 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633578
> BO15772.complete
GAAGTTATCAGTCGACATGAATTCTTCAACTGCTCTTATGTGCTTTGCAC
TGCTGCTGATTAGTCCTCTATGCATGGGCTATTCCGACGAAGATCGTGAG
GCTGACAACCTTAGAATTGCTGAAATTATCAAAAACGCCCAGGACGATGA
CTCCAAAATCAATAGCACCCAGGAACTACTTGACATCTATAGGCGTTTAT
ATCCCAGTTTGACCCCTGAGGAACGGGAGAGTATCGATAAGTTCGTCAAC
GAGCATACGGATGCCATTATAATCGATGGAGTTCCGATTCAGGGAGGTCG
AAAGGCGAGGATCGTTGGAAAGATTGTATCTCCAGGTGTGAAGGGCCTTG
CAACTGGATTCTTTGAAGAATTGGGTTCAAAGCTTGCTCAATTATTCACT
GGTGCAAGCTTTCTAGACCAT
BO15772.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:48:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TotA-RA | 390 | CG31509-PA | 1..387 | 17..403 | 1935 | 100 | Plus |
TotC-RA | 390 | CG31508-PA | 25..354 | 41..370 | 390 | 74.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:48:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TotA-RA | 579 | CG31509-RA | 42..428 | 17..403 | 1935 | 100 | Plus |
TotC-RA | 530 | CG31508-RA | 69..398 | 41..370 | 390 | 74.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:48:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20871186..20871549 | 40..403 | 1820 | 100 | Plus |
3R | 32079331 | 3R | 20873119..20873448 | 41..370 | 390 | 74.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:48:04 has no hits.
BO15772.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:23:31 Download gff for
BO15772.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotA-RA | 1..390 | 17..407 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:54:48 Download gff for
BO15772.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotA-RA | 42..435 | 17..411 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:31:46 Download gff for
BO15772.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotA-RA | 42..428 | 17..405 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:23:31 Download gff for
BO15772.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotA-RA | 42..435 | 17..411 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:38:09 Download gff for
BO15772.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TotA-RA | 42..428 | 17..405 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:38:09 Download gff for
BO15772.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20871077..20871099 | 17..39 | 100 | -> | Plus |
3R | 20871186..20871549 | 40..405 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:31:46 Download gff for
BO15772.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16696799..16696821 | 17..39 | 100 | -> | Plus |
arm_3R | 16696908..16697271 | 40..405 | 99 | | Plus |
BO15772.pep Sequence
Translation from 16 to 421
> BO15772.pep
MNSSTALMCFALLLISPLCMGYSDEDREADNLRIAEIIKNAQDDDSKINS
TQELLDIYRRLYPSLTPEERESIDKFVNEHTDAIIIDGVPIQGGRKARIV
GKIVSPGVKGLATGFFEELGSKLAQLFTGASFLDH
BO15772.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:48:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TotA-PA | 129 | CG31509-PA | 1..129 | 1..129 | 651 | 100 | Plus |
TotC-PA | 129 | CG31508-PA | 1..129 | 1..129 | 461 | 65.9 | Plus |
TotB-PA | 138 | CG5609-PA | 1..127 | 1..128 | 348 | 52.3 | Plus |