Clone Sequence Records
BO15778.5prime Sequence
383 bp (383 high quality bases) assembled on 2006-05-30
> BO15778.5prime
GAAGTTATCAGTCGACATGTGCAGTCTGCCCCATCATTCATCTTTCGGCG
TCGGTCTGGTGACGCGCAAGATGGGCAACAGCCTGAGCCCCACAGTGGAG
GTGACCTTGGAGGGCGATACCTACACCCTGACTACCACCTCCACCTTCAA
GACCTCTGCCATCAGCTTCAAGCTGGGCGTTGAGTTCGACGAGGAGACCC
TGGACGGTCGCAACGTCAAGAGCATCATCACCCTGGATGGCAACAAGCTG
ACGCAGGAGCAGAAGGGCGACAAGCCCACCACCATCGTCCGCGAGTTCAC
CGACAACGAGCTGATCACCACCCTCACCATCGGCAACGTTAAGTGCGTGC
GCGTCTACAAGGCCGTCGCAAGCTTTCTAGACC
BO15778.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:40:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6783-PA | 354 | CG6783-RA | 1..351 | 17..367 | 1755 | 100 | Plus |
CG6783-PB | 393 | CG6783-RB | 70..390 | 47..367 | 1605 | 100 | Plus |
CG6783-PC | 474 | CG6783-RC | 70..342 | 47..319 | 1365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:29:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fabp-RA | 1051 | CG6783-RA | 435..785 | 17..367 | 1755 | 100 | Plus |
fabp-RB | 723 | CG6783-RB | 137..457 | 47..367 | 1605 | 100 | Plus |
fabp-RC | 1660 | CG6783-RC | 137..409 | 47..319 | 1365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:29:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11564440..11564712 | 319..47 | 1365 | 100 | Minus |
3R | 32079331 | 3R | 11564324..11564371 | 367..320 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 22:29:57 has no hits.
BO15778.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:54:07 Download gff for
BO15778.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6783-PA | 1..354 | 17..371 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:59:08 Download gff for
BO15778.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6783-PA | 1..354 | 17..371 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:20:59 Download gff for
BO15778.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fabp-RA | 424..784 | 12..372 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:45:13 Download gff for
BO15778.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fabp-RA | 429..789 | 12..372 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:45:13 Download gff for
BO15778.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11564320..11564371 | 320..372 | 96 | <- | Minus |
3R | 11564440..11564711 | 48..319 | 100 | <- | Minus |
3R | 11564784..11564820 | 12..47 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:20:59 Download gff for
BO15778.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7390042..7390093 | 320..372 | 96 | <- | Minus |
arm_3R | 7390162..7390433 | 48..319 | 100 | <- | Minus |
arm_3R | 7390506..7390542 | 12..47 | 91 | | Minus |
BO15778.3prime Sequence
383 bp (383 high quality bases) assembled on 2006-05-30
> BO15778.3prime
ATGGTCTAGAAAGCTTGCGACGGCCTTGTAGACGCGCACGCACTTAACGT
TGCCGATGGTGAGGGTGGTGATCAGCTCGTTGTCGGTGAACTCGCGGACG
ATGGTGGTGGGCTTGTCGCCCTTCTGCTCCTGCGTCAGCTTGTTGCCATC
CAGGGTGATGATGCTCTTGACGTTGCGACCGTCCAGGGTCTCCTCGTCGA
ACTCAACGCCCAGCTTGAAGCTGATGGCAGAGGTCTTGAAGGTGGAGGTG
GTAGTCAGGGTGTAGGTATCGCCCTCCAAGGTCACCTCCACTGTGGGGCT
CAGGCTGTTGCCCATCTTGCGCGTCACCAGACCGACGCCGAAAGATGAAT
GATGGGGCAGACTGCACATGTCGACTGATAACT
BO15778.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:40:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6783-PA | 354 | CG6783-RA | 1..351 | 369..19 | 1755 | 100 | Minus |
CG6783-PB | 393 | CG6783-RB | 70..390 | 339..19 | 1605 | 100 | Minus |
CG6783-PC | 474 | CG6783-RC | 70..342 | 339..67 | 1365 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:28:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fabp-RA | 1051 | CG6783-RA | 435..785 | 369..19 | 1755 | 100 | Minus |
fabp-RB | 723 | CG6783-RB | 137..457 | 339..19 | 1605 | 100 | Minus |
fabp-RC | 1660 | CG6783-RC | 137..409 | 339..67 | 1365 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:28:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11564440..11564712 | 67..339 | 1365 | 100 | Plus |
3R | 32079331 | 3R | 11564324..11564371 | 19..66 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 18:28:16 has no hits.
BO15778.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:54:06 Download gff for
BO15778.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6783-PA | 1..354 | 15..369 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:59:06 Download gff for
BO15778.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6783-PA | 1..354 | 15..369 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:58:31 Download gff for
BO15778.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fabp-RA | 424..784 | 14..374 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:11:55 Download gff for
BO15778.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fabp-RA | 429..789 | 14..374 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:11:55 Download gff for
BO15778.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11564320..11564371 | 14..66 | 96 | <- | Plus |
3R | 11564440..11564711 | 67..338 | 100 | <- | Plus |
3R | 11564784..11564820 | 339..374 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:58:31 Download gff for
BO15778.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7390042..7390093 | 14..66 | 96 | <- | Plus |
arm_3R | 7390162..7390433 | 67..338 | 100 | <- | Plus |
arm_3R | 7390506..7390542 | 339..374 | 91 | | Plus |
BO15778.complete Sequence
385 bp (385 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633580
> BO15778.complete
GAAGTTATCAGTCGACATGTGCAGTCTGCCCCATCATTCATCTTTCGGCG
TCGGTCTGGTGACGCGCAAGATGGGCAACAGCCTGAGCCCCACAGTGGAG
GTGACCTTGGAGGGCGATACCTACACCCTGACTACCACCTCCACCTTCAA
GACCTCTGCCATCAGCTTCAAGCTGGGCGTTGAGTTCGACGAGGAGACCC
TGGACGGTCGCAACGTCAAGAGCATCATCACCCTGGATGGCAACAAGCTG
ACGCAGGAGCAGAAGGGCGACAAGCCCACCACCATCGTCCGCGAGTTCAC
CGACAACGAGCTGATCACCACCCTCACCATCGGCAACGTTAAGTGCGTGC
GCGTCTACAAGGCCGTCGCAAGCTTTCTAGACCAT
BO15778.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:21:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fabp-RA | 354 | CG6783-PA | 1..351 | 17..367 | 1755 | 100 | Plus |
fabp-RB | 393 | CG6783-PB | 70..390 | 47..367 | 1605 | 100 | Plus |
fabp-RC | 474 | CG6783-PC | 70..342 | 47..319 | 1365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:21:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fabp-RA | 1051 | CG6783-RA | 435..785 | 17..367 | 1755 | 100 | Plus |
fabp-RB | 723 | CG6783-RB | 137..457 | 47..367 | 1605 | 100 | Plus |
fabp-RC | 1660 | CG6783-RC | 137..409 | 47..319 | 1365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:21:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11564440..11564712 | 319..47 | 1365 | 100 | Minus |
3R | 32079331 | 3R | 11564324..11564371 | 367..320 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:21:03 has no hits.
BO15778.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:26:04 Download gff for
BO15778.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6783-RA | 1..354 | 17..371 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:54:50 Download gff for
BO15778.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6783-RA | 424..784 | 12..372 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:47 Download gff for
BO15778.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fabp-RA | 430..780 | 17..369 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:26:04 Download gff for
BO15778.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6783-RA | 424..784 | 12..372 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:51 Download gff for
BO15778.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fabp-RA | 435..785 | 17..369 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:51 Download gff for
BO15778.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11564322..11564371 | 320..369 | 96 | <- | Minus |
3R | 11564440..11564711 | 48..319 | 100 | <- | Minus |
3R | 11564784..11564814 | 17..47 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:47 Download gff for
BO15778.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7390044..7390093 | 320..369 | 96 | <- | Minus |
arm_3R | 7390162..7390433 | 48..319 | 100 | <- | Minus |
arm_3R | 7390506..7390536 | 17..47 | 100 | | Minus |
BO15778.pep Sequence
Translation from 16 to 385
> BO15778.pep
MCSLPHHSSFGVGLVTRKMGNSLSPTVEVTLEGDTYTLTTTSTFKTSAIS
FKLGVEFDEETLDGRNVKSIITLDGNKLTQEQKGDKPTTIVREFTDNELI
TTLTIGNVKCVRVYKAVASFLDH
BO15778.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:32:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fabp-PA | 117 | CG6783-PA | 1..117 | 1..117 | 595 | 100 | Plus |
fabp-PB | 130 | CG6783-PB | 24..130 | 11..117 | 536 | 100 | Plus |
fabp-PC | 157 | CG6783-PC | 24..116 | 11..103 | 456 | 97.8 | Plus |