Clone Sequence Records
BO15779.3prime Sequence
815 bp (802 high quality bases) assembled on 2006-05-30
> BO15779.3prime
ATGGTCTAGAAAGCTTGCAGTAATCCCCCTGTATTTCAAGCAGTTTTCCA
ATCTCCTCTCAGACAGGCTCCCCAGTGGCTCCTGCCTGCGGCAGCCGCCG
GGTCCTCTCATGTGCAGCCTCACATGATCCCGACACTCGATCCGTCCGTC
TCCATTGCAATCCTCGCCACCATATCGCTGCACATAGCTACGCACAATAC
GCTCGGCGCACTGGACATCCACCACGCATCTTCCGTAGTCCCGGGCGAGT
GAGTCGTCCGGGTCAATTATCCGGAGTGCGTCCTGCCAGTAGACGTGGGA
GATGCGATAAATGCCGCACGGCTCCTCTGGTCGTCCTCGGTGCCTGCAGA
TTGCCGGAATATTATCCGTGGCAGTGGTGGCCATGCAGTCCAGGCACTTG
GCACTGGGCTCTGGGGAGGATGTCGGAGGCGGCTGGAATGTTGTTATCGT
CGAGGTCTGGGCATCCACTCCCGCAGCGGTGACCATGGGAAAGTCCTCCT
CCAGGACCTCCACTTGCCCCCGATCCTTGAGATTGATGTGCAGTCGGCCC
AGATGATGCTTCTGTCTTAAGTGCATGTAAATGGCGCCGATGATGAGCAG
AAGGGCGATGAAAATGGCGCCCGTACTCAGGACTTGGCGAGTGCAGCAGG
ACCTTCGAGTCCATCGTTTCCGCTTACGACTTTCCCCGGACATTGACAGC
GCTTCGGCATATTCCTGATGCTCCACCACCTTGGACTCATCCGTTTCCAC
ATCATCCTCACTGTATTTGGCCAATTCCGCCACACTGCTGCTGCATGTGG
GCTCCATGTCGACTG
BO15779.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:40:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14823-PA | 792 | CG14823-RA | 1..789 | 807..19 | 3945 | 100 | Minus |
CG14823-PB | 351 | CG14823-RB | 1..343 | 807..465 | 1715 | 100 | Minus |
CG14823-PC | 351 | CG14823-RC | 1..343 | 807..465 | 1715 | 100 | Minus |
CG14823-PD | 390 | CG14823-RD | 1..343 | 807..465 | 1715 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:00:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14823-RA | 2098 | CG14823-RA | 66..859 | 812..19 | 3955 | 99.9 | Minus |
CG14823-RD | 1108 | CG14823-RD | 655..1100 | 464..19 | 2230 | 100 | Minus |
CG14823-RB | 974 | CG14823-RB | 521..966 | 464..19 | 2230 | 100 | Minus |
CG14823-RD | 1108 | CG14823-RD | 66..413 | 812..465 | 1725 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:00:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7066379..7066726 | 812..465 | 1725 | 99.7 | Minus |
3L | 28110227 | 3L | 7067554..7067779 | 465..240 | 1130 | 100 | Minus |
3L | 28110227 | 3L | 7068003..7068224 | 240..19 | 1110 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 12:00:48 has no hits.
BO15779.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:54:08 Download gff for
BO15779.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14823-PA | 1..792 | 15..807 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:59:09 Download gff for
BO15779.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14823-PA | 1..792 | 15..807 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:48:40 Download gff for
BO15779.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14823-RA | 62..862 | 15..815 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:33:42 Download gff for
BO15779.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14823-RA | 62..862 | 15..815 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:33:42 Download gff for
BO15779.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7066375..7066726 | 465..815 | 99 | -> | Minus |
3L | 7067555..7067779 | 240..464 | 100 | -> | Minus |
3L | 7068004..7068227 | 15..239 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:48:40 Download gff for
BO15779.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7059475..7059826 | 465..815 | 99 | -> | Minus |
arm_3L | 7060655..7060879 | 240..464 | 100 | -> | Minus |
arm_3L | 7061104..7061327 | 15..239 | 99 | | Minus |
BO15779.5prime Sequence
821 bp (763 high quality bases) assembled on 2006-05-30
> BO15779.5prime
GAAGTTATCAGTCGACATGGAGCCCACATGCAGCAGCAGTGTGGCGGAAT
TGGCCAAATACAGTGAGGATGATGTGGAAACGGATGAGTCCAAGGTGGTG
GAGCATCAGGAATATGCCGAAGCGCTGTCAATGTCCGGGGAAAGTCGTAA
GCGGAAACGATGGACTCGAAGGTCCTGCTGCACTCGCCAAGTCCTGAGTA
CGGGCGCCATTTTCATCGCCCTTCTGCTCATCATCGGCGCCATTTACATG
CACTTAAGACAGAAGCATCATCTGGGCCGACTGCACATCAATCTCAAGGA
TCGGGGGCAAGTGGAGGTCCTGGAGGAGGACTTTCCCATGGTCACCGCTG
CGGGAGTGGATGCCCAGACCTCGACGATAACAACATTCCAGCCGCCTCCG
ACATCCTCCCCAGAGCCCAGTGCCAAGTGCCTGGACTGCATGGCCACCAC
TGCCACGGATAATATTCCGGCAATCTGCAGGCACCGAGGACGACCAGAGG
AGCCGTGCGGCATTTATCGCATCTCCCACGTCTACTGGCAGGACGCACTC
CGGATAATTGACCCGGACGACTCACTCGCCCGGGACTACGGAAGATGCGT
GGTGGATGTCCAGTGCGCCGAGCGTATTGTGCGTAGCTATGTGCAGCGAT
ATGGTGGCGAGGATTGCAATGGAGACGGACGGATCGAGTGTCGGGATCAT
GTGAGGCTGCACATGAGAGGACCCGGCGGCTGCCGCAGGCAGGAGCCACT
GGGGAGCCTGTCTGAGAGGAGATTGGAAAACTGCTTGAAATACAGGGGGA
TTACTGCAAGCTTTCTAGACC
BO15779.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:40:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14823-PA | 792 | CG14823-RA | 1..789 | 17..805 | 3945 | 100 | Plus |
CG14823-PB | 351 | CG14823-RB | 1..343 | 17..359 | 1715 | 100 | Plus |
CG14823-PC | 351 | CG14823-RC | 1..343 | 17..359 | 1715 | 100 | Plus |
CG14823-PD | 390 | CG14823-RD | 1..343 | 17..359 | 1715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:57:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14823-RA | 2098 | CG14823-RA | 66..859 | 12..805 | 3955 | 99.9 | Plus |
CG14823-RD | 1108 | CG14823-RD | 655..1100 | 360..805 | 2230 | 100 | Plus |
CG14823-RB | 974 | CG14823-RB | 521..966 | 360..805 | 2230 | 100 | Plus |
CG14823-RD | 1108 | CG14823-RD | 66..413 | 12..359 | 1725 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:56:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7066379..7066726 | 12..359 | 1725 | 99.7 | Plus |
3L | 28110227 | 3L | 7067554..7067779 | 359..584 | 1130 | 100 | Plus |
3L | 28110227 | 3L | 7068003..7068224 | 584..805 | 1110 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 01:57:01 has no hits.
BO15779.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:54:10 Download gff for
BO15779.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14823-PA | 1..792 | 17..809 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:59:10 Download gff for
BO15779.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14823-PA | 1..792 | 17..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:41:15 Download gff for
BO15779.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14823-RA | 62..862 | 9..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:18:30 Download gff for
BO15779.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14823-RA | 62..862 | 9..809 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:18:30 Download gff for
BO15779.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7066375..7066726 | 9..359 | 99 | -> | Plus |
3L | 7067555..7067779 | 360..584 | 100 | -> | Plus |
3L | 7068004..7068227 | 585..809 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:41:15 Download gff for
BO15779.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7059475..7059826 | 9..359 | 99 | -> | Plus |
arm_3L | 7060655..7060879 | 360..584 | 100 | -> | Plus |
arm_3L | 7061104..7061327 | 585..809 | 99 | | Plus |
BO15779.complete Sequence
823 bp (823 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633581
> BO15779.complete
GAAGTTATCAGTCGACATGGAGCCCACATGCAGCAGCAGTGTGGCGGAAT
TGGCCAAATACAGTGAGGATGATGTGGAAACGGATGAGTCCAAGGTGGTG
GAGCATCAGGAATATGCCGAAGCGCTGTCAATGTCCGGGGAAAGTCGTAA
GCGGAAACGATGGACTCGAAGGTCCTGCTGCACTCGCCAAGTCCTGAGTA
CGGGCGCCATTTTCATCGCCCTTCTGCTCATCATCGGCGCCATTTACATG
CACTTAAGACAGAAGCATCATCTGGGCCGACTGCACATCAATCTCAAGGA
TCGGGGGCAAGTGGAGGTCCTGGAGGAGGACTTTCCCATGGTCACCGCTG
CGGGAGTGGATGCCCAGACCTCGACGATAACAACATTCCAGCCGCCTCCG
ACATCCTCCCCAGAGCCCAGTGCCAAGTGCCTGGACTGCATGGCCACCAC
TGCCACGGATAATATTCCGGCAATCTGCAGGCACCGAGGACGACCAGAGG
AGCCGTGCGGCATTTATCGCATCTCCCACGTCTACTGGCAGGACGCACTC
CGGATAATTGACCCGGACGACTCACTCGCCCGGGACTACGGAAGATGCGT
GGTGGATGTCCAGTGCGCCGAGCGTATTGTGCGTAGCTATGTGCAGCGAT
ATGGTGGCGAGGATTGCAATGGAGACGGACGGATCGAGTGTCGGGATCAT
GTGAGGCTGCACATGAGAGGACCCGGCGGCTGCCGCAGGCAGGAGCCACT
GGGGAGCCTGTCTGAGAGGAGATTGGAAAACTGCTTGAAATACAGGGGGA
TTACTGCAAGCTTTCTAGACCAT
BO15779.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:27:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14823-RA | 792 | CG14823-PA | 1..789 | 17..805 | 3945 | 100 | Plus |
CG14823-RD | 390 | CG14823-PD | 1..343 | 17..359 | 1715 | 100 | Plus |
CG14823-RB | 351 | CG14823-PB | 1..343 | 17..359 | 1715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:27:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14823-RA | 2098 | CG14823-RA | 66..859 | 12..805 | 3955 | 99.9 | Plus |
CG14823-RD | 1108 | CG14823-RD | 655..1100 | 360..805 | 2230 | 100 | Plus |
CG14823-RB | 974 | CG14823-RB | 521..966 | 360..805 | 2230 | 100 | Plus |
CG14823-RD | 1108 | CG14823-RD | 66..413 | 12..359 | 1725 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:27:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7066379..7066726 | 12..359 | 1725 | 99.7 | Plus |
3L | 28110227 | 3L | 7067554..7067779 | 359..584 | 1130 | 100 | Plus |
3L | 28110227 | 3L | 7068003..7068224 | 584..805 | 1110 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:27:13 has no hits.
BO15779.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:22:33 Download gff for
BO15779.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14823-RA | 1..792 | 17..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:56:27 Download gff for
BO15779.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14823-RA | 62..862 | 9..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:54:10 Download gff for
BO15779.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14823-RA | 71..859 | 17..807 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:22:33 Download gff for
BO15779.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14823-RA | 62..862 | 9..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:18:51 Download gff for
BO15779.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14823-RA | 71..859 | 17..807 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:18:51 Download gff for
BO15779.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7066384..7066726 | 17..359 | 100 | -> | Plus |
3L | 7067555..7067779 | 360..584 | 100 | -> | Plus |
3L | 7068004..7068224 | 585..807 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:54:10 Download gff for
BO15779.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7059484..7059826 | 17..359 | 100 | -> | Plus |
arm_3L | 7060655..7060879 | 360..584 | 100 | -> | Plus |
arm_3L | 7061104..7061324 | 585..807 | 99 | | Plus |
BO15779.pep Sequence
Translation from 16 to 823
> BO15779.pep
MEPTCSSSVAELAKYSEDDVETDESKVVEHQEYAEALSMSGESRKRKRWT
RRSCCTRQVLSTGAIFIALLLIIGAIYMHLRQKHHLGRLHINLKDRGQVE
VLEEDFPMVTAAGVDAQTSTITTFQPPPTSSPEPSAKCLDCMATTATDNI
PAICRHRGRPEEPCGIYRISHVYWQDALRIIDPDDSLARDYGRCVVDVQC
AERIVRSYVQRYGGEDCNGDGRIECRDHVRLHMRGPGGCRRQEPLGSLSE
RRLENCLKYRGITASFLDH
BO15779.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:46:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14823-PA | 263 | CG14823-PA | 1..263 | 1..263 | 1405 | 100 | Plus |
CG14823-PB | 116 | CG14823-PB | 1..114 | 1..114 | 582 | 100 | Plus |
CG14823-PD | 129 | CG14823-PD | 1..114 | 1..114 | 582 | 100 | Plus |
CG6435-PA | 163 | CG6435-PA | 29..144 | 138..258 | 170 | 37.1 | Plus |
CG6429-PA | 159 | CG6429-PA | 31..151 | 137..258 | 166 | 33.1 | Plus |