BO15788.complete Sequence
1810 bp assembled on 2006-10-11
GenBank Submission: FJ633586
> BO15788.complete
GAAGTTATCAGTCGACATGCTGGCTGTGAGATTGGCCAATTTGCCATGCG
TTAAATGCCTTCTGGCGGCCAAATGCAATGCGACCTATGAGTACGAAGGC
TGGTCGATTGTCCAGGAAGCGGTCTGCACCGGCGATGTGGACATACTGAC
GGCCATCATCGAAGTCCGGGATCTCCAGCGTCATGTCCAGCGGGTTACGC
ATGTGCCTAAGCTGCTGCAGCACCTATTGGACGCACCAGATTTCTACATC
GAGATGAAGTGGGAATTCACCTCCTGGGTGCCTCTGATGTCGCGTCTCTG
TCCCAGCGACACCTACAAGGTCTACAAGCGGGGAGCCAACGTCCGGATAG
ATACCACCCTGCTGGGCTTCGACAACAACACCTGGCAACGGGGCAATCGC
TCTTACATCTTCAAGGGGGCCAAAGAAACTGCCACGATGATCGAGATCGA
TCACGATACAAACGAAGTAATGGTGGAGGAGATGAGCAGCGATATCGGTG
ATATTGTGGCCATTCCACCAGCCTTGGGCACCGTGAGGGCGCGCCTCAAT
GCCCCGGTGATCACGAACAACATCGAGATGGACAAGATTAGCTTCGAGCG
CAACAAGTGCGGCATATGGGGATGGCGTAGCGAGAAATCTGAGATGATCA
ACGGCTACAACTGCAAGGTGTATGGGGCCAGCAACGTGGAGTTTGTTACA
AAGACGCGAATGGATCACCTTAGCGAGGAGCAAATTAAGAACAAGACAGC
GAGGACTCCACTGCATAGCCTGCTGGGAATTGCTGATGAGGATTATGTGT
CACCCGCTGATGCTGCTGCGGCACTAAAAGATCGTACACCATCGCCCCGG
TTGGAGGAAGCTTCCAACGCTGGAGTTGAAAATGGTGGCCGAAACTCACC
AGCCCCTGGAAATCAAAGCAACGGAAGCTCCGCGGGTGCGTCGGGCACCA
GTACTCCAAAGTCTTCTGTTACTCCGGAGGAGTATTTTACTCAGGAGTTT
GATCTTCACGGAAGGGATGTTGGCGGTCCCAAGAACCTGAGCACAAAGGT
GCAGCGCTTTAGAGCCAACTTATGGTTAGCCGAGGAGCATCCCATTCGAC
TGCAGGAACAGGTGCTTCCCATTCTGGATCTCATGTCCACCATGGCCAGT
CCACATGTGTCCAAGCTGAGAGACTTTATCACCATGCAGCTGCCTGCTGG
TTTTCCAGTCAAAGTGGAAATCCCGCTCTTCCATGTTTTAAATGCCTGTA
TTACATTTGGAAACGTATTTGCTTTAACCACGCCCGTTGATCACGTGGCC
ACGCTGCAGGAGCAAGATCGTGTCACTTGTTTGGTCGATGATCGCTGCTT
CGATATCCCAGCTCACTACACAAACAGGGGCAGCGATGTCCGTCGGCAAA
TTCCTCTTGACGAGGATGACATGCTACAGTATGCAATTGAGCAGAGTTTG
GTGGAAACAAGCGGAGCCTGTGGCGTGGACGCTCGGGACGACGACAAGGT
GGATATCTGGGAAGTGTTGAGAGGCCAAAACGTCGTGGGCTCCGATCTCC
TGCCAGAAGATGACGAGCAGCTGCAACGAGTCCTGCAGGAATCGCTGCTT
GGCGCCCATGCAAATCTCCAAAGCGGTTCGCCCGCCTCCGACGAAGACGA
CGATGGTGGCTTCCGGTATGTGGATCCCGATTTGGCCATGGCCATGCGAC
TGTCACAGCAAGAGCAGAGAAAGTTCGAACTGGAGCGGCAGCAGGAGCAG
GAGATGATCGAGCAGGCGTTAAAGCTTAGCCTGCAAGAGCACGCAAGCTT
TCTAGACCAT
BO15788.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:37:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15118-RD | 1779 | CG15118-PD | 1..1776 | 17..1792 | 8880 | 100 | Plus |
| CG15118-RB | 1914 | CG15118-PB | 136..1911 | 17..1792 | 8880 | 100 | Plus |
| CG15118-RA | 1914 | CG15118-PA | 136..1911 | 17..1792 | 8880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:37:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15118-RD | 2345 | CG15118-RD | 79..1854 | 17..1792 | 8880 | 100 | Plus |
| CG15118-RB | 2528 | CG15118-RB | 262..2037 | 17..1792 | 8880 | 100 | Plus |
| CG15118-RA | 2475 | CG15118-RA | 209..1984 | 17..1792 | 8880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:37:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19134883..19135625 | 1578..836 | 3715 | 100 | Minus |
| 2R | 25286936 | 2R | 19135939..19136255 | 739..423 | 1585 | 100 | Minus |
| 2R | 25286936 | 2R | 19136323..19136637 | 422..108 | 1575 | 100 | Minus |
| 2R | 25286936 | 2R | 19134218..19134432 | 1792..1578 | 1075 | 100 | Minus |
| 2R | 25286936 | 2R | 19135685..19135786 | 835..734 | 495 | 99 | Minus |
| 2R | 25286936 | 2R | 19136695..19136785 | 107..17 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:37:05 has no hits.
BO15788.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:31:48 Download gff for
BO15788.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15118-RB | 131..1914 | 9..1796 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:49:38 Download gff for
BO15788.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15118-RA | 212..1995 | 9..1796 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:45 Download gff for
BO15788.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15118-RA | 209..1984 | 17..1794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:31:49 Download gff for
BO15788.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15118-RA | 212..1995 | 9..1796 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:22:41 Download gff for
BO15788.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15118-RA | 209..1984 | 17..1794 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:22:41 Download gff for
BO15788.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19134216..19134431 | 1579..1794 | 99 | <- | Minus |
| 2R | 19134883..19135625 | 836..1578 | 100 | <- | Minus |
| 2R | 19135685..19135780 | 740..835 | 100 | <- | Minus |
| 2R | 19135939..19136255 | 423..739 | 100 | <- | Minus |
| 2R | 19136323..19136637 | 108..422 | 100 | <- | Minus |
| 2R | 19136695..19136785 | 17..107 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:45 Download gff for
BO15788.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15021721..15021936 | 1579..1794 | 99 | <- | Minus |
| arm_2R | 15022388..15023130 | 836..1578 | 100 | <- | Minus |
| arm_2R | 15023190..15023285 | 740..835 | 100 | <- | Minus |
| arm_2R | 15023444..15023760 | 423..739 | 100 | <- | Minus |
| arm_2R | 15023828..15024142 | 108..422 | 100 | <- | Minus |
| arm_2R | 15024200..15024290 | 17..107 | 100 | | Minus |
BO15788.pep Sequence
Translation from 16 to 1810
> BO15788.pep
MLAVRLANLPCVKCLLAAKCNATYEYEGWSIVQEAVCTGDVDILTAIIEV
RDLQRHVQRVTHVPKLLQHLLDAPDFYIEMKWEFTSWVPLMSRLCPSDTY
KVYKRGANVRIDTTLLGFDNNTWQRGNRSYIFKGAKETATMIEIDHDTNE
VMVEEMSSDIGDIVAIPPALGTVRARLNAPVITNNIEMDKISFERNKCGI
WGWRSEKSEMINGYNCKVYGASNVEFVTKTRMDHLSEEQIKNKTARTPLH
SLLGIADEDYVSPADAAAALKDRTPSPRLEEASNAGVENGGRNSPAPGNQ
SNGSSAGASGTSTPKSSVTPEEYFTQEFDLHGRDVGGPKNLSTKVQRFRA
NLWLAEEHPIRLQEQVLPILDLMSTMASPHVSKLRDFITMQLPAGFPVKV
EIPLFHVLNACITFGNVFALTTPVDHVATLQEQDRVTCLVDDRCFDIPAH
YTNRGSDVRRQIPLDEDDMLQYAIEQSLVETSGACGVDARDDDKVDIWEV
LRGQNVVGSDLLPEDDEQLQRVLQESLLGAHANLQSGSPASDEDDDGGFR
YVDPDLAMAMRLSQQEQRKFELERQQEQEMIEQALKLSLQEHASFLDH
BO15788.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:54:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15118-PD | 592 | CG15118-PD | 1..592 | 1..592 | 3090 | 100 | Plus |
| CG15118-PB | 637 | CG15118-PB | 46..637 | 1..592 | 3090 | 100 | Plus |
| CG15118-PA | 637 | CG15118-PA | 46..637 | 1..592 | 3090 | 100 | Plus |
| CG15118-PE | 630 | CG15118-PE | 46..578 | 1..531 | 2737 | 98.5 | Plus |
| CG5742-PB | 543 | CG5742-PB | 125..539 | 2..460 | 447 | 27.4 | Plus |
