Clone Sequence Records
BO15792.3prime Sequence
590 bp (590 high quality bases) assembled on 2006-05-30
> BO15792.3prime
ATGGTCTAGAAAGCTTGCGAAATGCTTTCGCATGTGGGCGGATACCAAAA
AGGGCGCCAGAAGTGAGCAGATCGAGACCAAGAAGCTGACCAGGCCCTGA
AGATTAGCTCCACTGCAGATGTCGTGCAGGATGTCCTCCACATATCCGTT
GTCGTTGTCGCAGAGACACAGCTTGGTCTTGCTGGACATGAACTTGGCCA
CTCCGATGGTGCGGTTGCTGTTCTCGTACTGGCACACCATTCCATCCTCG
CAGTCGTTGTTGCTGTTGCACTTGTGACGCAGGCCTTTCAGGACATCTGG
ACAGCTGCCAGCCGAAGGAGGCGAGTCGTCGCCGCATAGGCAACGCAGCT
TGTAGTCATTGGGATCCTTGACGCAGCTGGTGCGATCTATCGCCGTGCAA
TCATCGTGGGCACTGCACTCTCGTCCTTTAACAATTGGGACGTGCGTGGG
AGGCGGCTGATTGTTGGTCTTGCCAAAAGTGGTCAGAGCCGTGGAGCTGA
CCCCGAAGAGGATGATGAAGATGCCGAAGAGCATGGTCAGACTGCCGCAT
TGTGTGAAGCGCTTCAGGGGCTGCATGTCGACTGATAACT
BO15792.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:40:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13636-PA | 561 | CG13636-RA | 1..558 | 576..19 | 2790 | 100 | Minus |
CG13636-PB | 225 | CG13636-RB | 1..222 | 240..19 | 1110 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:28:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sosie-RA | 1738 | CG13636-RA | 393..950 | 576..19 | 2790 | 100 | Minus |
sosie-RC | 635 | CG13636-RC | 86..499 | 432..19 | 2070 | 100 | Minus |
sosie-RB | 1528 | CG13636-RB | 328..740 | 431..19 | 2065 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:28:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24839311..24839489 | 286..108 | 895 | 100 | Minus |
3R | 32079331 | 3R | 24838050..24838198 | 432..284 | 745 | 100 | Minus |
3R | 32079331 | 3R | 24837073..24837221 | 576..428 | 730 | 99.3 | Minus |
3R | 32079331 | 3R | 24839610..24839700 | 109..19 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 18:28:40 has no hits.
BO15792.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:54:25 Download gff for
BO15792.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13636-PA | 1..561 | 18..576 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:59:30 Download gff for
BO15792.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13636-PA | 1..561 | 18..576 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:58:37 Download gff for
BO15792.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sosie-RA | 393..950 | 19..576 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:11:59 Download gff for
BO15792.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sosie-RA | 393..950 | 19..576 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:11:59 Download gff for
BO15792.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24837073..24837217 | 432..576 | 100 | -> | Minus |
3R | 24838051..24838197 | 285..431 | 100 | -> | Minus |
3R | 24839313..24839489 | 108..284 | 100 | -> | Minus |
3R | 24839612..24839700 | 19..107 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:58:37 Download gff for
BO15792.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20662795..20662939 | 432..576 | 100 | -> | Minus |
arm_3R | 20663773..20663919 | 285..431 | 100 | -> | Minus |
arm_3R | 20665035..20665211 | 108..284 | 100 | -> | Minus |
arm_3R | 20665334..20665422 | 19..107 | 100 | | Minus |
BO15792.5prime Sequence
590 bp (590 high quality bases) assembled on 2006-05-30
> BO15792.5prime
GAAGTTATCAGTCGACATGCAGCCCCTGAAGCGCTTCACACAATGCGGCA
GTCTGACCATGCTCTTCGGCATCTTCATCATCCTCTTCGGGGTCAGCTCC
ACGGCTCTGACCACTTTTGGCAAGACCAACAATCAGCCGCCTCCCACGCA
CGTCCCAATTGTTAAAGGACGAGAGTGCAGTGCCCACGATGATTGCACGG
CGATAGATCGCACCAGCTGCGTCAAGGATCCCAATGACTACAAGCTGCGT
TGCCTATGCGGCGACGACTCGCCTCCTTCGGCTGGCAGCTGTCCAGATGT
CCTGAAAGGCCTGCGTCACAAGTGCAACAGCAACAACGACTGCGAGGATG
GAATGGTGTGCCAGTACGAGAACAGCAACCGCACCATCGGAGTGGCCAAG
TTCATGTCCAGCAAGACCAAGCTGTGTCTCTGCGACAACGACAACGGATA
TGTGGAGGACATCCTGCACGACATCTGCAGTGGAGCTAATCTTCAGGGCC
TGGTCAGCTTCTTGGTCTCGATCTGCTCACTTCTGGCGCCCTTTTTGGTA
TCCGCCCACATGCGAAAGCATTTCGCAAGCTTTCTAGACC
BO15792.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:40:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13636-PA | 561 | CG13636-RA | 1..558 | 17..574 | 2790 | 100 | Plus |
CG13636-PB | 225 | CG13636-RB | 1..222 | 353..574 | 1110 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:00:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sosie-RA | 1738 | CG13636-RA | 393..950 | 17..574 | 2790 | 100 | Plus |
sosie-RC | 635 | CG13636-RC | 86..499 | 161..574 | 2070 | 100 | Plus |
sosie-RB | 1528 | CG13636-RB | 328..740 | 162..574 | 2065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:00:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24839311..24839489 | 307..485 | 895 | 100 | Plus |
3R | 32079331 | 3R | 24838050..24838198 | 161..309 | 745 | 100 | Plus |
3R | 32079331 | 3R | 24837073..24837221 | 17..165 | 730 | 99.3 | Plus |
3R | 32079331 | 3R | 24839610..24839700 | 484..574 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 05:00:56 has no hits.
BO15792.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:54:26 Download gff for
BO15792.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13636-PA | 1..561 | 17..575 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:59:31 Download gff for
BO15792.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13636-PA | 1..561 | 17..575 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:53:40 Download gff for
BO15792.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sosie-RA | 393..950 | 17..574 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:18:38 Download gff for
BO15792.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sosie-RA | 393..950 | 17..574 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:18:38 Download gff for
BO15792.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24839612..24839700 | 486..574 | 100 | | Plus |
3R | 24837073..24837217 | 17..161 | 100 | -> | Plus |
3R | 24838051..24838197 | 162..308 | 100 | -> | Plus |
3R | 24839313..24839489 | 309..485 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:53:40 Download gff for
BO15792.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20662795..20662939 | 17..161 | 100 | -> | Plus |
arm_3R | 20663773..20663919 | 162..308 | 100 | -> | Plus |
arm_3R | 20665035..20665211 | 309..485 | 100 | -> | Plus |
arm_3R | 20665334..20665422 | 486..574 | 100 | | Plus |
BO15792.complete Sequence
592 bp (592 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633587
> BO15792.complete
GAAGTTATCAGTCGACATGCAGCCCCTGAAGCGCTTCACACAATGCGGCA
GTCTGACCATGCTCTTCGGCATCTTCATCATCCTCTTCGGGGTCAGCTCC
ACGGCTCTGACCACTTTTGGCAAGACCAACAATCAGCCGCCTCCCACGCA
CGTCCCAATTGTTAAAGGACGAGAGTGCAGTGCCCACGATGATTGCACGG
CGATAGATCGCACCAGCTGCGTCAAGGATCCCAATGACTACAAGCTGCGT
TGCCTATGCGGCGACGACTCGCCTCCTTCGGCTGGCAGCTGTCCAGATGT
CCTGAAAGGCCTGCGTCACAAGTGCAACAGCAACAACGACTGCGAGGATG
GAATGGTGTGCCAGTACGAGAACAGCAACCGCACCATCGGAGTGGCCAAG
TTCATGTCCAGCAAGACCAAGCTGTGTCTCTGCGACAACGACAACGGATA
TGTGGAGGACATCCTGCACGACATCTGCAGTGGAGCTAATCTTCAGGGCC
TGGTCAGCTTCTTGGTCTCGATCTGCTCACTTCTGGCGCCCTTTTTGGTA
TCCGCCCACATGCGAAAGCATTTCGCAAGCTTTCTAGACCAT
BO15792.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:54:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sosie-RA | 561 | CG13636-PA | 1..558 | 17..574 | 2790 | 100 | Plus |
sosie-RC | 225 | CG13636-PC | 1..222 | 353..574 | 1110 | 100 | Plus |
sosie-RB | 225 | CG13636-PB | 1..222 | 353..574 | 1110 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:54:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sosie-RA | 1738 | CG13636-RA | 393..950 | 17..574 | 2790 | 100 | Plus |
sosie-RC | 635 | CG13636-RC | 86..499 | 161..574 | 2070 | 100 | Plus |
sosie-RB | 1528 | CG13636-RB | 328..740 | 162..574 | 2065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:54:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24839311..24839489 | 307..485 | 895 | 100 | Plus |
3R | 32079331 | 3R | 24838050..24838198 | 161..309 | 745 | 100 | Plus |
3R | 32079331 | 3R | 24837073..24837221 | 17..165 | 730 | 99.3 | Plus |
3R | 32079331 | 3R | 24839610..24839700 | 484..574 | 455 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:54:55 has no hits.
BO15792.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:13:58 Download gff for
BO15792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13636-RA | 1..561 | 17..575 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:32:44 Download gff for
BO15792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13636-RA | 394..951 | 17..574 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:28:26 Download gff for
BO15792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sosie-RA | 393..950 | 17..576 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:13:58 Download gff for
BO15792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13636-RA | 394..951 | 17..574 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:58:58 Download gff for
BO15792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sosie-RA | 393..950 | 17..576 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:58:58 Download gff for
BO15792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24837073..24837217 | 17..161 | 100 | -> | Plus |
3R | 24838051..24838197 | 162..308 | 100 | -> | Plus |
3R | 24839313..24839489 | 309..485 | 100 | -> | Plus |
3R | 24839612..24839700 | 486..576 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:28:26 Download gff for
BO15792.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20665035..20665211 | 309..485 | 100 | -> | Plus |
arm_3R | 20665334..20665422 | 486..576 | 97 | | Plus |
arm_3R | 20662795..20662939 | 17..161 | 100 | -> | Plus |
arm_3R | 20663773..20663919 | 162..308 | 100 | -> | Plus |
BO15792.pep Sequence
Translation from 16 to 592
> BO15792.pep
MQPLKRFTQCGSLTMLFGIFIILFGVSSTALTTFGKTNNQPPPTHVPIVK
GRECSAHDDCTAIDRTSCVKDPNDYKLRCLCGDDSPPSAGSCPDVLKGLR
HKCNSNNDCEDGMVCQYENSNRTIGVAKFMSSKTKLCLCDNDNGYVEDIL
HDICSGANLQGLVSFLVSICSLLAPFLVSAHMRKHFASFLDH
BO15792.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:16:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sosie-PA | 186 | CG13636-PA | 1..186 | 1..186 | 1014 | 100 | Plus |
sosie-PC | 74 | CG13636-PC | 1..74 | 113..186 | 391 | 100 | Plus |
sosie-PB | 74 | CG13636-PB | 1..74 | 113..186 | 391 | 100 | Plus |