Clone Sequence Records
BO15801.3prime Sequence
467 bp (467 high quality bases) assembled on 2006-06-02
> BO15801.3prime
ATGGTCTAGAAAGCTTGCATCTTCTCCAGCACTTGGTTCGGCCACCTGCT
GCTGATCGGCCAAGTTATGCCTGAGTGGATATAGCTGCTCCATGTGTTCT
ATAAAGGGTCGAATACCATCCGGATTCTTCATGTACTTGGCCACGCTGAG
GATGATGTGGCGGTAGATCTGGTGATCCCGATAGGCCGCATTCGGTCGTC
GCTTTTGTGGCGGTCGCTCTTGAGCTCTTTGAATCACCCGTCGTCGTCGC
ACTGATTCAGTTCTTCGGCAGCGCTCACAATAAGCGAAATATGCACAAGT
GATGATTACCAGTGCGGAAAGTGCGTAGATGAGCCAACTCCAGCTGAGAA
CCGTCACAAATGTAGCATTCAAATCCCTCCAGATGGGCGAGATCTGCTCC
AGCTGGGTCTTTTTGGCATCCCTCCTCCAGAACACAAATTGAGGCATCAT
CATGTCGACTGATAACT
BO15801.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:40:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32240-PA | 438 | CG32240-RA | 1..435 | 453..19 | 2175 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:18:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32240-RA | 645 | CG32240-RA | 144..578 | 453..19 | 2175 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:17:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4380931..4381127 | 19..215 | 985 | 100 | Plus |
3L | 28110227 | 3L | 4381190..4381327 | 215..352 | 690 | 100 | Plus |
3L | 28110227 | 3L | 4381385..4381486 | 352..453 | 510 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 07:18:03 has no hits.
BO15801.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:54:32 Download gff for
BO15801.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32240-PA | 1..438 | 18..453 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:59:37 Download gff for
BO15801.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32240-PA | 1..438 | 18..453 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:37:25 Download gff for
BO15801.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32240-RA | 130..578 | 19..467 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:43:30 Download gff for
BO15801.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32240-RA | 130..578 | 19..467 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:43:30 Download gff for
BO15801.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4380931..4381126 | 19..214 | 100 | <- | Plus |
3L | 4381190..4381327 | 215..352 | 100 | <- | Plus |
3L | 4381386..4381500 | 353..467 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:37:25 Download gff for
BO15801.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4380931..4381126 | 19..214 | 100 | <- | Plus |
arm_3L | 4381190..4381327 | 215..352 | 100 | <- | Plus |
arm_3L | 4381386..4381500 | 353..467 | 95 | | Plus |
BO15801.5prime Sequence
467 bp (467 high quality bases) assembled on 2006-05-30
> BO15801.5prime
GAAGTTATCAGTCGACATGATGATGCCTCAATTTGTGTTCTGGAGGAGGG
ATGCCAAAAAGACCCAGCTGGAGCAGATCTCGCCCATCTGGAGGGATTTG
AATGCTACATTTGTGACGGTTCTCAGCTGGAGTTGGCTCATCTACGCACT
TTCCGCACTGGTAATCATCACTTGTGCATATTTCGCTTATTGTGAGCGCT
GCCGAAGAACTGAATCAGTGCGACGACGACGGGTGATTCAAAGAGCTCAA
GAGCGACCGCCACAAAAGCGACGACCGAATGCGGCCTATCGGGATCACCA
GATCTACCGCCACATCATCCTCAGCGTGGCCAAGTACATGAAGAATCCGG
ATGGTATTCGACCCTTTATAGAACACATGGAGCAGCTATATCCACTCAGG
CATAACTTGGCCGATCAGCAGCAGGTGGCCGAACCAAGTGCTGGAGAAGA
TGCAAGCTTTCTAGACC
BO15801.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:40:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32240-PA | 438 | CG32240-RA | 1..435 | 17..451 | 2175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:23:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32240-RA | 645 | CG32240-RA | 144..578 | 17..451 | 2175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:23:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4380931..4381127 | 451..255 | 985 | 100 | Minus |
3L | 28110227 | 3L | 4381190..4381327 | 255..118 | 690 | 100 | Minus |
3L | 28110227 | 3L | 4381385..4381486 | 118..17 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:23:16 has no hits.
BO15801.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:54:33 Download gff for
BO15801.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32240-PA | 1..438 | 17..452 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:59:39 Download gff for
BO15801.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32240-PA | 1..438 | 17..452 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:32:28 Download gff for
BO15801.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32240-RA | 130..578 | 3..451 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:19:47 Download gff for
BO15801.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32240-RA | 130..578 | 3..451 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:19:47 Download gff for
BO15801.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4380931..4381126 | 256..451 | 100 | <- | Minus |
3L | 4381190..4381327 | 118..255 | 100 | <- | Minus |
3L | 4381386..4381500 | 3..117 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:32:28 Download gff for
BO15801.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4380931..4381126 | 256..451 | 100 | <- | Minus |
arm_3L | 4381190..4381327 | 118..255 | 100 | <- | Minus |
arm_3L | 4381386..4381500 | 3..117 | 95 | | Minus |
BO15801.complete Sequence
469 bp (469 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633588
> BO15801.complete
GAAGTTATCAGTCGACATGATGATGCCTCAATTTGTGTTCTGGAGGAGGG
ATGCCAAAAAGACCCAGCTGGAGCAGATCTCGCCCATCTGGAGGGATTTG
AATGCTACATTTGTGACGGTTCTCAGCTGGAGTTGGCTCATCTACGCACT
TTCCGCACTGGTAATCATCACTTGTGCATATTTCGCTTATTGTGAGCGCT
GCCGAAGAACTGAATCAGTGCGACGACGACGGGTGATTCAAAGAGCTCAA
GAGCGACCGCCACAAAAGCGACGACCGAATGCGGCCTATCGGGATCACCA
GATCTACCGCCACATCATCCTCAGCGTGGCCAAGTACATGAAGAATCCGG
ATGGTATTCGACCCTTTATAGAACACATGGAGCAGCTATATCCACTCAGG
CATAACTTGGCCGATCAGCAGCAGGTGGCCGAACCAAGTGCTGGAGAAGA
TGCAAGCTTTCTAGACCAT
BO15801.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:36:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32240-RA | 438 | CG32240-PA | 1..435 | 17..451 | 2175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:36:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32240-RA | 645 | CG32240-RA | 144..578 | 17..451 | 2175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:36:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4380931..4381127 | 451..255 | 985 | 100 | Minus |
3L | 28110227 | 3L | 4381190..4381327 | 255..118 | 690 | 100 | Minus |
3L | 28110227 | 3L | 4381385..4381486 | 118..17 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:36:49 has no hits.
BO15801.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:07:25 Download gff for
BO15801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32240-RA | 1..438 | 17..452 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:02:56 Download gff for
BO15801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32240-RA | 65..513 | 3..451 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:55:47 Download gff for
BO15801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32240-RA | 144..578 | 17..453 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:07:25 Download gff for
BO15801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32240-RA | 65..513 | 3..451 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:29 Download gff for
BO15801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32240-RA | 144..578 | 17..453 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:29 Download gff for
BO15801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4380929..4381126 | 256..453 | 98 | <- | Minus |
3L | 4381190..4381327 | 118..255 | 100 | <- | Minus |
3L | 4381386..4381486 | 17..117 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:55:47 Download gff for
BO15801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4380929..4381126 | 256..453 | 98 | <- | Minus |
arm_3L | 4381190..4381327 | 118..255 | 100 | <- | Minus |
arm_3L | 4381386..4381486 | 17..117 | 100 | | Minus |
BO15801.pep Sequence
Translation from 16 to 469
> BO15801.pep
MMMPQFVFWRRDAKKTQLEQISPIWRDLNATFVTVLSWSWLIYALSALVI
ITCAYFAYCERCRRTESVRRRRVIQRAQERPPQKRRPNAAYRDHQIYRHI
ILSVAKYMKNPDGIRPFIEHMEQLYPLRHNLADQQQVAEPSAGEDASFLD
H
BO15801.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:32:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32240-PA | 145 | CG32240-PA | 1..145 | 1..145 | 773 | 100 | Plus |