BO15805.complete Sequence
1468 bp (1468 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633589
> BO15805.complete
GAAGTTATCAGTCGACATGTTTAGTCCCGAGTACGAGAAGCGCATCCTGA
AGCACTACAGTCCTGTGGCACGGAATCTGTTCAACAACTTCGAGTCGTCC
ACTACGCCCACATCTCTCGACCGCTTCATACCCTGCAGAGCGTACAACAA
CTGGCAGACGAACTTTGCGTCAATCAACAAGTCCAATGACAACTCGCCGC
AGACGAGTAAGAAGCAGCGGGACTGCGGGGAAACGGCACGCGATAGTCTC
GCCTACTCCTGCCTACTGAAGAACGAGCTCCTCGGATCGGCAATCGACGA
CGTGAAGACCGCCGGCGAGGAGCGGAATGAGAATGCCTACACGCCGGCCG
CAAAGCGGAGTCTCTTCAAGTACCAGTCACCCACCAAGCAGGACTACAAT
GGCGAGTGTCCGTACTCGTTGTCACCCGTCAGCGCCAAAAGTCAGAAGCT
GTTGCGATCGCCGCGCAAGGCTACGCGCAAAATCTCTCGCATTCCCTTCA
AGGTGCTAGACGCGCCCGAGTTGCAGGACGACTTCTATCTGAACCTGGTC
GACTGGTCGTCGCAGAACGTACTGGCTGTAGGCCTGGGCAGCTGTGTCTA
TCTGTGGAGCGCGTGCACCAGTCAGGTTACCCGCCTGTGTGATCTCAGTC
CGGATGCGAATACGGTGACCTCGGTGTCGTGGAACGAGCGTGGCAACACC
GTGGCCGTGGGCACACATCACGGCTACGTGACCGTCTGGGATGTGGCGGC
CAATAAGCAGATCAACAAACTGAATGGCCATTCGGCGCGTGTGGGCGCCT
TGGCATGGAACAGTGACATCCTGTCGAGCGGGTCGCGAGACCGTTGGATC
ATACAGCGGGATACGAGAACGCCGCAACTGCAATCGGAGCGCAGATTGGC
CGGACATCGGCAGGAGGTGTGCGGACTGAAATGGTCACCGGATAATCAAT
ACTTGGCCAGTGGCGGCAACGATAATCGGTTGTATGTGTGGAATCAGCAT
TCCGTGAATCCCGTACAATCATACACGGAGCATATGGCGGCTGTAAAGGC
GATCGCGTGGTCGCCGCATCACCACGGACTCCTGGCCAGCGGCGGTGGAA
CGGCGGATAGGTGTATCCGTTTCTGGAATACGCTGACGGGCCAGCCCATG
CAGTGCGTGGACACGGGCTCGCAGGTTTGCAATCTGGCCTGGTCCAAGCA
CTCCTCGGAGCTGGTCTCCACGCACGGCTACTCGCAGAACCAGATACTCG
TGTGGAAATATCCCTCCCTGACGCAAGTGGCCAAGCTGACGGGCCATTCG
TATCGTGTGCTCTATCTGGCGCTGAGTCCCGATGGTGAGGCTATTGTTAC
GGGCGCCGGCGACGAGACGCTGCGATTTTGGAACGTATTCAGCAAGGCGC
GCAGTCAGAAGGAGAACAAGTCCGTTCTGAATCTGTTTGCCAATATCAGA
GCAAGCTTTCTAGACCAT
BO15805.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:22:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rap-RA | 1437 | CG3000-PA | 1..1434 | 17..1450 | 7170 | 100 | Plus |
| rap-RB | 1437 | CG3000-PB | 1..1434 | 17..1450 | 7170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:22:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rap-RA | 2610 | CG3000-RA | 471..1904 | 17..1450 | 7170 | 100 | Plus |
| rap-RB | 2516 | CG3000-RB | 377..1810 | 17..1450 | 7170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:22:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4667996..4668822 | 1450..624 | 4135 | 100 | Minus |
| X | 23542271 | X | 4674366..4674624 | 392..134 | 1295 | 100 | Minus |
| X | 23542271 | X | 4668902..4669141 | 627..388 | 1200 | 100 | Minus |
| X | 23542271 | X | 4676254..4676375 | 138..17 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:22:44 has no hits.
BO15805.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:52:16 Download gff for
BO15805.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rap-RB | 1..1437 | 17..1454 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:07:57 Download gff for
BO15805.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rap-RB | 375..1812 | 17..1455 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:07:03 Download gff for
BO15805.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rap-RB | 381..1808 | 23..1452 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:52:16 Download gff for
BO15805.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rap-RB | 375..1812 | 17..1455 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:20 Download gff for
BO15805.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| rap-RB | 383..1810 | 23..1452 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:20 Download gff for
BO15805.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4676254..4676369 | 23..138 | 100 | | Minus |
| X | 4667994..4668820 | 626..1452 | 99 | <- | Minus |
| X | 4668904..4669137 | 392..625 | 100 | <- | Minus |
| X | 4674367..4674619 | 139..391 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:07:03 Download gff for
BO15805.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4562027..4562853 | 626..1452 | 99 | <- | Minus |
| arm_X | 4562937..4563170 | 392..625 | 100 | <- | Minus |
| arm_X | 4568400..4568652 | 139..391 | 100 | <- | Minus |
| arm_X | 4570287..4570402 | 23..138 | 100 | | Minus |
BO15805.pep Sequence
Translation from 16 to 1468
> BO15805.pep
MFSPEYEKRILKHYSPVARNLFNNFESSTTPTSLDRFIPCRAYNNWQTNF
ASINKSNDNSPQTSKKQRDCGETARDSLAYSCLLKNELLGSAIDDVKTAG
EERNENAYTPAAKRSLFKYQSPTKQDYNGECPYSLSPVSAKSQKLLRSPR
KATRKISRIPFKVLDAPELQDDFYLNLVDWSSQNVLAVGLGSCVYLWSAC
TSQVTRLCDLSPDANTVTSVSWNERGNTVAVGTHHGYVTVWDVAANKQIN
KLNGHSARVGALAWNSDILSSGSRDRWIIQRDTRTPQLQSERRLAGHRQE
VCGLKWSPDNQYLASGGNDNRLYVWNQHSVNPVQSYTEHMAAVKAIAWSP
HHHGLLASGGGTADRCIRFWNTLTGQPMQCVDTGSQVCNLAWSKHSSELV
STHGYSQNQILVWKYPSLTQVAKLTGHSYRVLYLALSPDGEAIVTGAGDE
TLRFWNVFSKARSQKENKSVLNLFANIRASFLDH
BO15805.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:01:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| rap-PA | 478 | CG3000-PA | 1..478 | 1..478 | 2551 | 100 | Plus |
| rap-PB | 478 | CG3000-PB | 1..478 | 1..478 | 2551 | 100 | Plus |
| fzr2-PA | 451 | CG16783-PA | 1..451 | 1..478 | 1184 | 49.2 | Plus |
| fzy-PA | 526 | CG4274-PA | 75..501 | 23..459 | 874 | 41.3 | Plus |
| ebi-PA | 700 | CG4063-PA | 408..655 | 212..456 | 204 | 26.4 | Plus |
