Clone Sequence Records
BO15806.3prime Sequence
557 bp (557 high quality bases) assembled on 2006-06-02
> BO15806.3prime
ATGGTCTAGAAAGCTTGCTTCTAGATCACCGTGGACACCTAAACGCAGGG
TGATGAGTATGTCCAGCAAGAAGACCAGCGAGGTAACCAAGGCAATCGAG
GCGGAAGCCATCACGAGATCCAAACGATGCATATTCGGGTGCCAGTAGTT
GCGATCCTTGGTGGTGGACCAATCCCGGAAAAGCAGGGCGGTTACGGCCA
CGAAGAGCACAAAGGCCACTAGATTCCACAAAGTAGCCGTACGCCATGGA
GTCAAATCACCGAAGAGCGCCATTATCAGATAGATTGCCGTGTAGATGGT
CAGTGCTCCAAAGGTCACATAGCAAAGGGAAGCCACTCGGGGAGTGATGA
ACACCCGCAGATGAGAATTGGTGGCCGGCTCGTCGATCAGACCCAAACAG
CATATAAGCAGGCACAGTTCCACAATCTTGATGCATATCACCGTGTAGGT
GGCCTTTTTGTTTCCATGAGTTGTGGCAAAGGAATTATCGTCAGCCGGCG
ACATTTCGACGCGTGAGATTTCTATCGATCGCAAGTAGCTCATGTCGACT
GATAACT
BO15806.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:40:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9628-PB | 528 | CG9628-RB | 1..525 | 543..19 | 2625 | 100 | Minus |
CG9628-PA | 489 | CG9628-RA | 1..486 | 504..19 | 2430 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:05:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9628-RC | 890 | CG9628-RC | 173..697 | 543..19 | 2625 | 100 | Minus |
CG9628-RB | 1053 | CG9628-RB | 145..669 | 543..19 | 2625 | 100 | Minus |
CG9628-RA | 1125 | CG9628-RA | 239..741 | 521..19 | 2515 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:05:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14627556..14627790 | 253..19 | 1175 | 100 | Minus |
3L | 28110227 | 3L | 14627334..14627496 | 415..253 | 815 | 100 | Minus |
3L | 28110227 | 3L | 14627018..14627126 | 523..415 | 545 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 22:05:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
transib4 | 2656 | transib4 TRANSIB4 2656bp | 1981..2031 | 530..481 | 126 | 74.5 | Minus |
BO15806.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:54:36 Download gff for
BO15806.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9628-PB | 1..528 | 16..543 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:59:43 Download gff for
BO15806.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9628-PB | 1..528 | 16..543 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 07:42:40 Download gff for
BO15806.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9628-RB | 137..669 | 19..552 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:25 Download gff for
BO15806.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9628-RB | 137..669 | 19..552 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:25 Download gff for
BO15806.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14627556..14627790 | 19..253 | 100 | | Minus |
3L | 14627020..14627126 | 415..521 | 100 | -> | Minus |
3L | 14627335..14627495 | 254..414 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 07:42:40 Download gff for
BO15806.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14620120..14620226 | 415..521 | 100 | -> | Minus |
arm_3L | 14620435..14620595 | 254..414 | 100 | -> | Minus |
arm_3L | 14620656..14620890 | 19..253 | 100 | | Minus |
BO15806.5prime Sequence
557 bp (557 high quality bases) assembled on 2006-05-30
> BO15806.5prime
GAAGTTATCAGTCGACATGAGCTACTTGCGATCGATAGAAATCTCACGCG
TCGAAATGTCGCCGGCTGACGATAATTCCTTTGCCACAACTCATGGAAAC
AAAAAGGCCACCTACACGGTGATATGCATCAAGATTGTGGAACTGTGCCT
GCTTATATGCTGTTTGGGTCTGATCGACGAGCCGGCCACCAATTCTCATC
TGCGGGTGTTCATCACTCCCCGAGTGGCTTCCCTTTGCTATGTGACCTTT
GGAGCACTGACCATCTACACGGCAATCTATCTGATAATGGCGCTCTTCGG
TGATTTGACTCCATGGCGTACGGCTACTTTGTGGAATCTAGTGGCCTTTG
TGCTCTTCGTGGCCGTAACCGCCCTGCTTTTCCGGGATTGGTCCACCACC
AAGGATCGCAACTACTGGCACCCGAATATGCATCGTTTGGATCTCGTGAT
GGCTTCCGCCTCGATTGCCTTGGTTACCTCGCTGGTCTTCTTGCTGGACA
TACTCATCACCCTGCGTTTAGGTGTCCACGGTGATCTAGAAGCAAGCTTT
CTAGACC
BO15806.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:40:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9628-PB | 528 | CG9628-RB | 1..525 | 17..541 | 2625 | 100 | Plus |
CG9628-PA | 489 | CG9628-RA | 1..486 | 56..541 | 2430 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:08:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9628-RC | 890 | CG9628-RC | 173..697 | 17..541 | 2625 | 100 | Plus |
CG9628-RB | 1053 | CG9628-RB | 145..669 | 17..541 | 2625 | 100 | Plus |
CG9628-RA | 1125 | CG9628-RA | 239..741 | 39..541 | 2515 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:08:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14627556..14627790 | 307..541 | 1175 | 100 | Plus |
3L | 28110227 | 3L | 14627334..14627496 | 145..307 | 815 | 100 | Plus |
3L | 28110227 | 3L | 14627018..14627126 | 37..145 | 545 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 13:08:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
transib4 | 2656 | transib4 TRANSIB4 2656bp | 1981..2031 | 30..79 | 126 | 74.5 | Plus |
BO15806.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:54:37 Download gff for
BO15806.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9628-PB | 1..528 | 17..544 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:59:45 Download gff for
BO15806.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9628-PB | 1..528 | 17..544 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:07:06 Download gff for
BO15806.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9628-RB | 137..669 | 8..541 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:40:16 Download gff for
BO15806.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9628-RB | 137..669 | 8..541 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:40:16 Download gff for
BO15806.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14627020..14627126 | 39..145 | 100 | -> | Plus |
3L | 14627335..14627495 | 146..306 | 100 | -> | Plus |
3L | 14627556..14627790 | 307..541 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:07:06 Download gff for
BO15806.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14620120..14620226 | 39..145 | 100 | -> | Plus |
arm_3L | 14620435..14620595 | 146..306 | 100 | -> | Plus |
arm_3L | 14620656..14620890 | 307..541 | 100 | | Plus |
BO15806.complete Sequence
559 bp (559 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ638742
> BO15806.complete
GAAGTTATCAGTCGACATGAGCTACTTGCGATCGATAGAAATCTCACGCG
TCGAAATGTCGCCGGCTGACGATAATTCCTTTGCCACAACTCATGGAAAC
AAAAAGGCCACCTACACGGTGATATGCATCAAGATTGTGGAACTGTGCCT
GCTTATATGCTGTTTGGGTCTGATCGACGAGCCGGCCACCAATTCTCATC
TGCGGGTGTTCATCACTCCCCGAGTGGCTTCCCTTTGCTATGTGACCTTT
GGAGCACTGACCATCTACACGGCAATCTATCTGATAATGGCGCTCTTCGG
TGATTTGACTCCATGGCGTACGGCTACTTTGTGGAATCTAGTGGCCTTTG
TGCTCTTCGTGGCCGTAACCGCCCTGCTTTTCCGGGATTGGTCCACCACC
AAGGATCGCAACTACTGGCACCCGAATATGCATCGTTTGGATCTCGTGAT
GGCTTCCGCCTCGATTGCCTTGGTTACCTCGCTGGTCTTCTTGCTGGACA
TACTCATCACCCTGCGTTTAGGTGTCCACGGTGATCTAGAAGCAAGCTTT
CTAGACCAT
BO15806.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:08:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9628-RC | 528 | CG9628-PC | 1..525 | 17..541 | 2625 | 100 | Plus |
CG9628-RB | 528 | CG9628-PB | 1..525 | 17..541 | 2625 | 100 | Plus |
CG9628-RA | 489 | CG9628-PA | 1..486 | 56..541 | 2430 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:08:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9628-RC | 890 | CG9628-RC | 173..697 | 17..541 | 2625 | 100 | Plus |
CG9628-RB | 1053 | CG9628-RB | 145..669 | 17..541 | 2625 | 100 | Plus |
CG9628-RA | 1125 | CG9628-RA | 239..741 | 39..541 | 2515 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:08:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14627556..14627790 | 307..541 | 1175 | 100 | Plus |
3L | 28110227 | 3L | 14627334..14627496 | 145..307 | 815 | 100 | Plus |
3L | 28110227 | 3L | 14627018..14627126 | 37..145 | 545 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 01:08:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
transib4 | 2656 | transib4 TRANSIB4 2656bp | 1981..2031 | 30..79 | 126 | 74.5 | Plus |
BO15806.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:52:17 Download gff for
BO15806.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9628-RB | 1..528 | 17..544 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:07:59 Download gff for
BO15806.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9628-RB | 125..657 | 8..541 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:40:14 Download gff for
BO15806.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9628-RB | 145..669 | 17..543 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:52:18 Download gff for
BO15806.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9628-RB | 125..657 | 8..541 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:45:41 Download gff for
BO15806.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9628-RB | 145..669 | 17..543 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:45:41 Download gff for
BO15806.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14626873..14626894 | 17..38 | 100 | -> | Plus |
3L | 14627020..14627126 | 39..145 | 100 | -> | Plus |
3L | 14627335..14627495 | 146..306 | 100 | -> | Plus |
3L | 14627556..14627790 | 307..543 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:40:14 Download gff for
BO15806.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14619973..14619994 | 17..38 | 100 | -> | Plus |
arm_3L | 14620120..14620226 | 39..145 | 100 | -> | Plus |
arm_3L | 14620435..14620595 | 146..306 | 100 | -> | Plus |
arm_3L | 14620656..14620890 | 307..543 | 99 | | Plus |
BO15806.pep Sequence
Translation from 16 to 559
> BO15806.pep
MSYLRSIEISRVEMSPADDNSFATTHGNKKATYTVICIKIVELCLLICCL
GLIDEPATNSHLRVFITPRVASLCYVTFGALTIYTAIYLIMALFGDLTPW
RTATLWNLVAFVLFVAVTALLFRDWSTTKDRNYWHPNMHRLDLVMASASI
ALVTSLVFLLDILITLRLGVHGDLEASFLDH
BO15806.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:01:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9628-PC | 175 | CG9628-PC | 1..175 | 1..175 | 904 | 100 | Plus |
CG9628-PB | 175 | CG9628-PB | 1..175 | 1..175 | 904 | 100 | Plus |
CG9628-PA | 162 | CG9628-PA | 1..162 | 14..175 | 844 | 100 | Plus |