BO15807.complete Sequence
1375 bp (1375 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633590
> BO15807.complete
GAAGTTATCAGTCGACATGGCGCCCTTCAAGATCAAGTTCCGGATGGGCA
GCTCGCGCAGCACCTCGCAGGAGCACGACCCCGACCCGCAGGTGAACGAG
GCGCTCCTGGGCGCCCAGAGCCAGCAGCAGAACGGGCAGCCCCTCCAGGA
GGCGGTGGAGGCCAGCAGCAGCTCCAGCCTCGACCTCGCGGACTCCAGCA
GTCTCGGCCAGCTGAGCAGCGAGCGCAAGCTGCTCCTGCCGCCCACCACC
AGTAGCAGCACCATGCGATTGGGATATCTTAACCAGAACCGCACTCCGTG
CATCAACGAATCGTTGGCGGATACGGATGCAGACACAGTGCCCACCACCC
CACCGCCTTCCTACGAGCATGTTCTAGAGGAGAACACTCGGTTGTCCCAA
CACCAGCGACAGTTGTCCCTGGACAGCGCCACTCCGAACCAGAACAGCCG
GCGCAGCTCGGCGAACAGCTCACGGCACAGTGCCGCCCAGCTGAGTGCCG
CCTTGGAGCAGCTGGCCGGGAATGGAGGCGCCGGGGAGTACTGCAACGAC
CCGGACTGCAGGCAGAACTTGAACAACAACGGAGCCACCAGCCACAACGG
CAACCACATCCAGAACGCGAACAACAACAACGACGGCGAGCAGATCTTCG
AGGGCGTCACGGAACTGGAGCTGCGAAGCGACAACGAGGAGCAGCTTAGC
ATCAACGAGTTCCTGCTGGAGACAGAGATGGCGGCCTCACCGTCCCGCCG
TCTGGAGGATCGATACGCGGGTGGCGCAGGAGCGGACGAGGATCAGGGCG
GCCAGTGCCAGGACGATCAGTGCGCGCAGTGCAGCGAGGAGCGGGCCAGC
GGAGAGGACAGGGATGCGGCCAGCACCAGCAGTCAGGCGGCGGCATCGTC
CGGCGGTGGCAACAACTTTTACGATCCGCTCCTGAATCGGGGCAGCTACG
CAAACTACAGTGAAGGTGGCTCTGCGAGTTCGGGACCTGGTTCGGCCAAC
GGCCAAATGTGCCAGGAGGCCTGCTGCAGCGGATCCGCATCCGGATCGAC
TGCATCCAGGAGCGGGCGGAGTGGAAGGCGGCAGAACCAGCAGGGTCAGC
CGCCCAACTGCCACACCAGCCTGCTCACGCCGGAGATGATGAGCAACAAG
ACGAGCAAGGAGATCTACAAGGACCTGGCCAAGCAGTGGGGCATCACCTG
CAAGATGTCCGAGAGCTGTCGGTGCATGGAGTGTCAGAGTCACTACTTCG
ACTGCGACTACGATGATAACGAGCACCAGAAGACGGACGGAGGATTGGGC
GCTGGCACGCCCATGTTTATCAGCGAGGTGATGCACGGATCCGGGTGCAA
CATTTTGGCAAGCTTTCTAGACCAT
BO15807.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:48:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3257-RA | 1344 | CG3257-PA | 1..1341 | 17..1357 | 6705 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:48:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3257-RA | 2911 | CG3257-RA | 306..1647 | 16..1357 | 6710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:48:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24120890..24121476 | 381..967 | 2935 | 100 | Plus |
| 2R | 25286936 | 2R | 24121531..24121834 | 964..1267 | 1520 | 100 | Plus |
| 2R | 25286936 | 2R | 24119998..24120255 | 16..273 | 1290 | 100 | Plus |
| 2R | 25286936 | 2R | 24120711..24120821 | 272..382 | 555 | 100 | Plus |
| 2R | 25286936 | 2R | 24121910..24121999 | 1268..1357 | 450 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 06:48:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2358..2443 | 556..645 | 132 | 66.7 | Plus |
BO15807.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:52:19 Download gff for
BO15807.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3257-RA | 1..1344 | 17..1358 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:08:01 Download gff for
BO15807.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3257-RA | 306..1650 | 13..1357 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:54:47 Download gff for
BO15807.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3257-RA | 307..1647 | 17..1359 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:52:19 Download gff for
BO15807.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3257-RA | 306..1650 | 13..1357 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:54:51 Download gff for
BO15807.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3257-RA | 307..1647 | 17..1359 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:54:51 Download gff for
BO15807.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24119999..24120254 | 17..272 | 100 | -> | Plus |
| 2R | 24120712..24120821 | 273..382 | 100 | -> | Plus |
| 2R | 24121533..24121834 | 966..1267 | 100 | -> | Plus |
| 2R | 24121910..24121999 | 1268..1359 | 97 | | Plus |
| 2R | 24120892..24121474 | 383..965 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:54:47 Download gff for
BO15807.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20007522..20007777 | 17..272 | 100 | -> | Plus |
| arm_2R | 20008235..20008344 | 273..382 | 100 | -> | Plus |
| arm_2R | 20008415..20008997 | 383..965 | 100 | -> | Plus |
| arm_2R | 20009056..20009357 | 966..1267 | 100 | -> | Plus |
| arm_2R | 20009433..20009522 | 1268..1359 | 97 | | Plus |
BO15807.pep Sequence
Translation from 16 to 1375
> BO15807.pep
MAPFKIKFRMGSSRSTSQEHDPDPQVNEALLGAQSQQQNGQPLQEAVEAS
SSSSLDLADSSSLGQLSSERKLLLPPTTSSSTMRLGYLNQNRTPCINESL
ADTDADTVPTTPPPSYEHVLEENTRLSQHQRQLSLDSATPNQNSRRSSAN
SSRHSAAQLSAALEQLAGNGGAGEYCNDPDCRQNLNNNGATSHNGNHIQN
ANNNNDGEQIFEGVTELELRSDNEEQLSINEFLLETEMAASPSRRLEDRY
AGGAGADEDQGGQCQDDQCAQCSEERASGEDRDAASTSSQAAASSGGGNN
FYDPLLNRGSYANYSEGGSASSGPGSANGQMCQEACCSGSASGSTASRSG
RSGRRQNQQGQPPNCHTSLLTPEMMSNKTSKEIYKDLAKQWGITCKMSES
CRCMECQSHYFDCDYDDNEHQKTDGGLGAGTPMFISEVMHGSGCNILASF
LDH
BO15807.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:01:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3257-PA | 447 | CG3257-PA | 1..447 | 1..447 | 2352 | 100 | Plus |
| CG13594-PB | 478 | CG13594-PB | 98..374 | 143..422 | 194 | 25.4 | Plus |
| CG13594-PA | 478 | CG13594-PA | 98..374 | 143..422 | 194 | 25.4 | Plus |
| Mur89F-PC | 2158 | CG4090-PC | 311..636 | 12..364 | 169 | 21.8 | Plus |
| Mur89F-PB | 2159 | CG4090-PB | 311..636 | 12..364 | 169 | 21.8 | Plus |
