BO15808.complete Sequence
1006 bp (1006 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633591
> BO15808.complete
GAAGTTATCAGTCGACATGTCCTGGCAAAGTGTTCCCCAGTATCCCCAAT
ACCAAGATCCCAACCAGCAGTACAACTATGGCGGCGGTAATCCCCCGCAG
GGAGGATATGGTGGATATCCACCTCAGGGCGGCTATCCACCTCAAGGACC
GCCGCAAGGCTACCCACCCTATGCACAAGGAGGTGCTCAACCCTATCCAC
AGCCCTACGGACAGGGGCCTCCACCGGGAGGTTATGCTCCCCAGCCGGGA
TTTATCCAACCACCACCATCTGCTGGCGGCTACGGAGCCTACGATGATCC
GGAGAGCCAGCCCAAGAACTTCTCGTTTGACGACCAAAGCATCCGTCGCG
GATTCATACGTAAGGTGTACCTGATTCTAATGGGACAACTAATCGTCACT
TTTGGAGCTGTTGCCCTGTTTGTATACCACGAGGGCACTAAAACCTTTGC
CAGGAATAACATGTGGCTCTTTTGGGTTGCCCTCGGCGTAATGTTAGTAA
CCATGCTGTCTATGGCTTGCTGCGAAAGTGTGCGCCGCCAAACACCGACG
AACTTCATATTCTTGGGTCTGTTTACAGCAGCTCAGTCGTTCTTAATGGG
AGTTTCCGCAACCAAATATGCTCCGAAAGAGGTTCTCATGGCGGTGGGCA
TAACAGCAGCGGTTTGCTTGGCCCTAACGATCTTCGCCTTGCAGACAAAG
TACGACTTTACTATGATGGGCGGTATTTTGATCGCCTGCATGGTGGTGTT
CCTGATCTTCGGCATCGTGGCCATCTTTGTAAAGGGAAAGATCATAACAC
TGGTGTACGCCTCGATTGGAGCGCTGCTCTTCTCCGTTTATCTCATCTAC
GACACACAGTTAATGATGGGCGGCGAGCACAAATACTCTATCAGTCCCGA
GGAGTACATCTTTGCGGCACTAAACCTCTACCTGGACATCATCAATATCT
TCATGTACATTCTGACTATAATCGGCGCATCGCGCGACGCAAGCTTTCTA
GACCAT
BO15808.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:43:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nmda1-RE | 975 | CG3798-PE | 1..972 | 17..988 | 4860 | 100 | Plus |
| Nmda1-RC | 975 | CG3798-PC | 1..972 | 17..988 | 4860 | 100 | Plus |
| Nmda1-RD | 975 | CG3798-PD | 1..972 | 17..988 | 4860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:43:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nmda1-RE | 1742 | CG3798-RE | 207..1178 | 17..988 | 4860 | 100 | Plus |
| Nmda1-RC | 1701 | CG3798-RC | 166..1137 | 17..988 | 4860 | 100 | Plus |
| Nmda1-RD | 1800 | CG3798-RD | 265..1236 | 17..988 | 4860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:43:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12877658..12878016 | 988..630 | 1795 | 100 | Minus |
| 2R | 25286936 | 2R | 12878384..12878712 | 383..55 | 1645 | 100 | Minus |
| 2R | 25286936 | 2R | 12878071..12878322 | 633..382 | 1260 | 100 | Minus |
| 2R | 25286936 | 2R | 12875289..12875635 | 975..629 | 415 | 74.6 | Minus |
| 3R | 32079331 | 3R | 14152992..14153129 | 961..824 | 240 | 78.3 | Minus |
| 2R | 25286936 | 2R | 12879052..12879091 | 56..17 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:43:26 has no hits.
BO15808.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:52:20 Download gff for
BO15808.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmda1-RE | 1..975 | 17..992 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:08:02 Download gff for
BO15808.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmda1-RC | 181..1168 | 8..996 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:01:24 Download gff for
BO15808.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmda1-RD | 265..1236 | 17..990 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:52:20 Download gff for
BO15808.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmda1-RC | 181..1168 | 8..996 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:25:19 Download gff for
BO15808.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nmda1-RD | 265..1236 | 17..990 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:25:19 Download gff for
BO15808.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12877656..12878014 | 632..990 | 99 | <- | Minus |
| 2R | 12878073..12878321 | 383..631 | 100 | <- | Minus |
| 2R | 12878385..12878710 | 57..382 | 100 | <- | Minus |
| 2R | 12879052..12879091 | 17..56 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:01:24 Download gff for
BO15808.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8765161..8765519 | 632..990 | 99 | <- | Minus |
| arm_2R | 8765578..8765826 | 383..631 | 100 | <- | Minus |
| arm_2R | 8765890..8766215 | 57..382 | 100 | <- | Minus |
| arm_2R | 8766557..8766596 | 17..56 | 100 | | Minus |
BO15808.pep Sequence
Translation from 16 to 1006
> BO15808.pep
MSWQSVPQYPQYQDPNQQYNYGGGNPPQGGYGGYPPQGGYPPQGPPQGYP
PYAQGGAQPYPQPYGQGPPPGGYAPQPGFIQPPPSAGGYGAYDDPESQPK
NFSFDDQSIRRGFIRKVYLILMGQLIVTFGAVALFVYHEGTKTFARNNMW
LFWVALGVMLVTMLSMACCESVRRQTPTNFIFLGLFTAAQSFLMGVSATK
YAPKEVLMAVGITAAVCLALTIFALQTKYDFTMMGGILIACMVVFLIFGI
VAIFVKGKIITLVYASIGALLFSVYLIYDTQLMMGGEHKYSISPEEYIFA
ALNLYLDIINIFMYILTIIGASRDASFLDH
BO15808.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:01:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nmda1-PE | 324 | CG3798-PE | 1..324 | 1..324 | 1732 | 100 | Plus |
| Nmda1-PC | 324 | CG3798-PC | 1..324 | 1..324 | 1732 | 100 | Plus |
| Nmda1-PD | 324 | CG3798-PD | 1..324 | 1..324 | 1732 | 100 | Plus |
| Nmda1-PH | 313 | CG3798-PH | 2..313 | 13..324 | 1661 | 100 | Plus |
| Nmda1-PG | 313 | CG3798-PG | 2..313 | 13..324 | 1661 | 100 | Plus |
