BO15812.complete Sequence
1603 bp assembled on 2008-11-10
GenBank Submission: KX794635
> BO15812.complete
GAAGTTATCAGTCGACATGAGCAAGTTCTCGCTCTTCAATGGCAACGATG
AGGACGAGCACGAAACGGAGCAGAAATACGCACACCTTATGAATCTGGGA
AATGCGAGTCACTCGGTGTCGGAAAATAGTTCTGGGAAAGCGAGTCGCTG
CAAGTGGACCAGCGCAAAGGTGGAGACCTTTCTGGAAATCATTCACCAAC
TTAAACTGCAAGCTGCTCTTCGAAGGCCGCGAAGCAATGCAAAGGTGTTT
CGTATGGTGTCCAGAGAAATGGCCCGGCGGAACTGCCCCAAGAGTCCAAA
GCATCTGAGAGTCAAGTTCCATCAGATGCGGCGTCAGTATGCGAGAGCTC
GGAATGGCGGCGAACCATTCGAGCACTTTGAGGCGGTGCACGAGTTGATG
CAGGGAGAAGATGTATCTGATCTGGATGAAGAGGCGCTAGAGAGTGACAG
CGATATGGAGGCCGACGAGGACCAGTCCGGCATGATCTCAGAAACCGAAG
GGGACGATGCTTTGGATGCCTCAGGATCTTCAGTTAACATCGTCGCCCGC
TGCAAGTGGGCAGAGGGCGAAGTGGACCTCCTCCTAGACCTGATCCACAC
ACTTGGACTGCGAGCAGCTTTGCTGCAAAAGCGCAATGCCAAGGTCTTCA
AGCTGCTGTCCAAGGAGATGGCAAAACGCAACTGCCACAAGGGTGCTGAG
AAGCTGCGCATCAAGTTCCAGCAGCTGCGGCGATTGTACAACAAGGTCAA
GAACGGCACGGGGAAAACGTTCGAGCATTTTGAGGCGATGCGACTGGTCC
TGGATCCCACCGAAGAGGAGGCGGCCGCAGATGCTGAAGCGGAAGCCCAT
CTGAGCAGCGCAAGCGATAGTGATTTCAATGACAGTGACGAGGAAGAGGG
TGATGCATCACAGAGAAGCGGAGCGCACTTTTGGACAGACGAAGAGGTTG
ATTCGTTTCTACTCATCATTCGGGACAATGGTTTCTTTCGCGCCTTGGAT
GGCTCAAGGAAGCGCAACTTCCAGACCCTGGTGCACATTTCCAACATCCT
GGCTAAGCAGGACATCAAACGCACGCCACACCAGCTGCGCAATAAACTAA
GGCTGCTCTGCAAGCGTCATCGAGAGGCCAAGGAGCACGGGCTAGATAAT
GTACGCATTCTGCCTCGCCACTTTGAGCTTTTCGATGAACTGATTCAGGC
GCCGCGGGAGAACAGAGAAAGTGCCATCAGCAGGCTCATTCGCATCAGCA
AGCCTTCCTTTCTCAAGCCGCCAGGCAAACCAAGCGTTCCGCTGGAAAGT
GACAGCGACAACTCCAGCTCCACCTGCGATCTCCTAAGAGCGGCAGCCGA
TAGCGAGGACTACGTGGACGCCATCGAGATGGAGGCTGAACCAACGCCGA
TTGAAGCACTCACTGCAATCATAGAAGGTCAAAAGCAGCTGCTTGCGCAG
ATCAAAACTACCAACGAAAGCTTCTTGCGGCAGCAACGCGAGCAGCAGCA
TCAATTTTTGGAACAAGTATCGGAACTGATGCATCGAGATCGAGAGGAGA
CCCTGCGCAGGATCAGCGAAATGCTGCAACCGAAGGCAAGCTTTCTAGAC
CAT
BO15812.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:42:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10494-RA | 1572 | CG10494-PA | 1..1569 | 17..1585 | 7845 | 100 | Plus |
| CG10494-RB | 1335 | CG10494-PB | 1..1332 | 254..1585 | 6660 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:42:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10494-RA | 1794 | CG10494-RA | 121..1689 | 17..1585 | 7845 | 100 | Plus |
| CG10494-RB | 2160 | CG10494-RB | 102..1674 | 17..1585 | 7770 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:42:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21517260..21517923 | 1585..922 | 3320 | 100 | Minus |
| 2R | 25286936 | 2R | 21517981..21518398 | 923..506 | 2090 | 100 | Minus |
| 2R | 25286936 | 2R | 21518457..21518870 | 506..93 | 2070 | 100 | Minus |
| 2R | 25286936 | 2R | 21518930..21519005 | 92..17 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:42:46 has no hits.
BO15812.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:17:02 Download gff for
BO15812.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10494-RA | 93..1673 | 9..1589 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:53:21 Download gff for
BO15812.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10494-RA | 121..1689 | 17..1587 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:27:44 Download gff for
BO15812.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10494-RA | 102..1670 | 17..1587 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:24:50 Download gff for
BO15812.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10494-RA | 121..1689 | 17..1587 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:24:50 Download gff for
BO15812.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21517981..21518397 | 507..923 | 100 | <- | Minus |
| 2R | 21517258..21517921 | 924..1587 | 99 | <- | Minus |
| 2R | 21518457..21518870 | 93..506 | 100 | <- | Minus |
| 2R | 21518930..21519005 | 17..92 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:53:21 Download gff for
BO15812.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17404763..17405426 | 924..1587 | 99 | <- | Minus |
| arm_2R | 17405486..17405902 | 507..923 | 100 | <- | Minus |
| arm_2R | 17405962..17406375 | 93..506 | 100 | <- | Minus |
| arm_2R | 17406435..17406510 | 17..92 | 100 | | Minus |
BO15812.pep Sequence
Translation from 16 to 1603
> BO15812.pep
MSKFSLFNGNDEDEHETEQKYAHLMNLGNASHSVSENSSGKASRCKWTSA
KVETFLEIIHQLKLQAALRRPRSNAKVFRMVSREMARRNCPKSPKHLRVK
FHQMRRQYARARNGGEPFEHFEAVHELMQGEDVSDLDEEALESDSDMEAD
EDQSGMISETEGDDALDASGSSVNIVARCKWAEGEVDLLLDLIHTLGLRA
ALLQKRNAKVFKLLSKEMAKRNCHKGAEKLRIKFQQLRRLYNKVKNGTGK
TFEHFEAMRLVLDPTEEEAAADAEAEAHLSSASDSDFNDSDEEEGDASQR
SGAHFWTDEEVDSFLLIIRDNGFFRALDGSRKRNFQTLVHISNILAKQDI
KRTPHQLRNKLRLLCKRHREAKEHGLDNVRILPRHFELFDELIQAPRENR
ESAISRLIRISKPSFLKPPGKPSVPLESDSDNSSSTCDLLRAAADSEDYV
DAIEMEAEPTPIEALTAIIEGQKQLLAQIKTTNESFLRQQREQQHQFLEQ
VSELMHRDREETLRRISEMLQPKASFLDH
BO15812.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:08:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10494-PA | 523 | CG10494-PA | 1..523 | 1..523 | 2672 | 100 | Plus |
| CG10494-PB | 444 | CG10494-PB | 1..444 | 80..523 | 2265 | 100 | Plus |
| CG10494-PB | 444 | CG10494-PB | 83..324 | 28..271 | 298 | 34.8 | Plus |
