Clone Sequence Records
BO15816.3prime Sequence
536 bp (536 high quality bases) assembled on 2006-06-02
> BO15816.3prime
ATGGTCTAGAAAGCTTGCGAAAATGTCTTTGATATCCTTACCCTTGTTGA
GCTCAGCCAGCAGCTTGTCCTCTGGCTCGTACTCCAGGGGCACCAGCGAG
TTGGGCGTGAGTGGCTTGTCCCTCAAGTAGAGACCATAGCGAGATGGGTA
CCTGCGCTCGATCTCCTGCATGCGCTTCAGATGATCATTCCAGGCCTTCT
CTGCGTCGTAGTTAGCTGGAATTGTTCGGCTGTAGTGATGATCGTAGATG
GCACGGGGCGAGTAGCCGTAGGTGTCGCGGCTCACTGGCAGATATCTGTA
GCCAGAGGACTGGACGCGCTCATTGGCGGTGGCGGGCTCGTCATAGATGC
TCCTGTAGGAGGGCGAGTCCAGGTAGGAGCTGTAGGGACGAGAGGCACGG
GGCGCCTCGTGGGCACGGATATCCTCGGAGCCCTTCAGGGACCTGATGTA
GGACTGCCAGAATTTCGCCTTCTTGCTGGGGCTCTCATTGCGCCCAATCA
TTTCCAAGTGGTTTTTGAACATGTCGACTGATAACT
BO15816.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:40:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6803-PC | 507 | Zeelin1-RC | 1..504 | 522..19 | 2520 | 100 | Minus |
CG6803-PD | 939 | Zeelin1-RD | 1..481 | 522..42 | 2405 | 100 | Minus |
CG6803-PE | 501 | Zeelin1-RE | 1..481 | 522..42 | 2405 | 100 | Minus |
CG6803-PB | 1098 | Zeelin1-RB | 1..481 | 522..42 | 2405 | 100 | Minus |
CG6803-PA | 474 | Zeelin1-RA | 1..301 | 522..222 | 1505 | 100 | Minus |
CG6803-PA | 474 | Zeelin1-RA | 302..460 | 200..42 | 795 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:15:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mf-RQ | 1440 | CG6803-RQ | 115..618 | 522..19 | 2520 | 100 | Minus |
Mf-RC | 824 | CG6803-RC | 115..618 | 522..19 | 2520 | 100 | Minus |
Mf-RM | 1939 | CG553-RM | 115..595 | 522..42 | 2405 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:15:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15178280..15178490 | 222..432 | 1055 | 100 | Plus |
3R | 32079331 | 3R | 15176161..15176295 | 19..153 | 675 | 100 | Plus |
3R | 32079331 | 3R | 15179038..15179129 | 431..522 | 460 | 100 | Plus |
3R | 32079331 | 3R | 15176362..15176437 | 150..225 | 365 | 98.7 | Plus |
Blast to na_te.dros performed on 2015-02-03 07:15:38 has no hits.
BO15816.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:54:41 Download gff for
BO15816.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6803-PC | 1..507 | 15..522 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:59:49 Download gff for
BO15816.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6803-PC | 1..507 | 15..522 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:37:02 Download gff for
BO15816.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mf-RC | 105..621 | 15..532 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:43:12 Download gff for
BO15816.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mf-RC | 105..621 | 15..532 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:43:12 Download gff for
BO15816.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15176157..15176293 | 15..151 | 98 | <- | Plus |
3R | 15176364..15176433 | 152..221 | 100 | <- | Plus |
3R | 15178280..15178489 | 222..431 | 100 | <- | Plus |
3R | 15179039..15179139 | 432..532 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:37:02 Download gff for
BO15816.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11004761..11004861 | 432..532 | 96 | | Plus |
arm_3R | 11002086..11002155 | 152..221 | 100 | <- | Plus |
arm_3R | 11001879..11002015 | 15..151 | 98 | <- | Plus |
arm_3R | 11004002..11004211 | 222..431 | 100 | <- | Plus |
BO15816.5prime Sequence
536 bp (536 high quality bases) assembled on 2006-05-30
> BO15816.5prime
GAAGTTATCAGTCGACATGTTCAAAAACCACTTGGAAATGATTGGGCGCA
ATGAGAGCCCCAGCAAGAAGGCGAAATTCTGGCAGTCCTACATCAGGTCC
CTGAAGGGCTCCGAGGATATCCGTGCCCACGAGGCGCCCCGTGCCTCTCG
TCCCTACAGCTCCTACCTGGACTCGCCCTCCTACAGGAGCATCTATGACG
AGCCCGCCACCGCCAATGAGCGCGTCCAGTCCTCTGGCTACAGATATCTG
CCAGTGAGCCGCGACACCTACGGCTACTCGCCCCGTGCCATCTACGATCA
TCACTACAGCCGAACAATTCCAGCTAACTACGACGCAGAGAAGGCCTGGA
ATGATCATCTGAAGCGCATGCAGGAGATCGAGCGCAGGTACCCATCTCGC
TATGGTCTCTACTTGAGGGACAAGCCACTCACGCCCAACTCGCTGGTGCC
CCTGGAGTACGAGCCAGAGGACAAGCTGCTGGCTGAGCTCAACAAGGGTA
AGGATATCAAAGACATTTTCGCAAGCTTTCTAGACC
BO15816.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:40:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6803-PC | 507 | Zeelin1-RC | 1..504 | 17..520 | 2520 | 100 | Plus |
CG6803-PD | 939 | Zeelin1-RD | 1..481 | 17..497 | 2405 | 100 | Plus |
CG6803-PE | 501 | Zeelin1-RE | 1..481 | 17..497 | 2405 | 100 | Plus |
CG6803-PB | 1098 | Zeelin1-RB | 1..481 | 17..497 | 2405 | 100 | Plus |
CG6803-PA | 474 | Zeelin1-RA | 1..301 | 17..317 | 1505 | 100 | Plus |
CG6803-PA | 474 | Zeelin1-RA | 302..460 | 339..497 | 795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:06:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mf-RQ | 1440 | CG6803-RQ | 115..618 | 17..520 | 2520 | 100 | Plus |
Mf-RC | 824 | CG6803-RC | 115..618 | 17..520 | 2520 | 100 | Plus |
Mf-RM | 1939 | CG553-RM | 115..595 | 17..497 | 2405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:06:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15178280..15178490 | 317..107 | 1055 | 100 | Minus |
3R | 32079331 | 3R | 15176161..15176295 | 520..386 | 675 | 100 | Minus |
3R | 32079331 | 3R | 15179038..15179129 | 108..17 | 460 | 100 | Minus |
3R | 32079331 | 3R | 15176362..15176437 | 389..314 | 365 | 98.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:06:12 has no hits.
BO15816.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:54:42 Download gff for
BO15816.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6803-PC | 1..507 | 17..524 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:59:50 Download gff for
BO15816.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6803-PC | 1..507 | 17..524 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:54:13 Download gff for
BO15816.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mf-RC | 105..621 | 7..524 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:30:10 Download gff for
BO15816.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mf-RC | 105..621 | 7..524 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:30:10 Download gff for
BO15816.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15176157..15176293 | 388..524 | 98 | <- | Minus |
3R | 15176364..15176433 | 318..387 | 100 | <- | Minus |
3R | 15178280..15178489 | 108..317 | 100 | <- | Minus |
3R | 15179039..15179139 | 7..107 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:54:13 Download gff for
BO15816.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11001879..11002015 | 388..524 | 98 | <- | Minus |
arm_3R | 11002086..11002155 | 318..387 | 100 | <- | Minus |
arm_3R | 11004002..11004211 | 108..317 | 100 | <- | Minus |
arm_3R | 11004761..11004861 | 7..107 | 96 | | Minus |
BO15816.complete Sequence
538 bp (538 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633593
> BO15816.complete
GAAGTTATCAGTCGACATGTTCAAAAACCACTTGGAAATGATTGGGCGCA
ATGAGAGCCCCAGCAAGAAGGCGAAATTCTGGCAGTCCTACATCAGGTCC
CTGAAGGGCTCCGAGGATATCCGTGCCCACGAGGCGCCCCGTGCCTCTCG
TCCCTACAGCTCCTACCTGGACTCGCCCTCCTACAGGAGCATCTATGACG
AGCCCGCCACCGCCAATGAGCGCGTCCAGTCCTCTGGCTACAGATATCTG
CCAGTGAGCCGCGACACCTACGGCTACTCGCCCCGTGCCATCTACGATCA
TCACTACAGCCGAACAATTCCAGCTAACTACGACGCAGAGAAGGCCTGGA
ATGATCATCTGAAGCGCATGCAGGAGATCGAGCGCAGGTACCCATCTCGC
TATGGTCTCTACTTGAGGGACAAGCCACTCACGCCCAACTCGCTGGTGCC
CCTGGAGTACGAGCCAGAGGACAAGCTGCTGGCTGAGCTCAACAAGGGTA
AGGATATCAAAGACATTTTCGCAAGCTTTCTAGACCAT
BO15816.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:22:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mf-RQ | 507 | CG6803-PQ | 1..504 | 17..520 | 2520 | 100 | Plus |
Mf-RC | 507 | CG6803-PC | 1..504 | 17..520 | 2520 | 100 | Plus |
Mf-RM | 1095 | CG6803-PM | 1..481 | 17..497 | 2405 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:22:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mf-RQ | 1440 | CG6803-RQ | 115..618 | 17..520 | 2520 | 100 | Plus |
Mf-RC | 824 | CG6803-RC | 115..618 | 17..520 | 2520 | 100 | Plus |
Mf-RM | 1939 | CG553-RM | 115..595 | 17..497 | 2405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:22:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15178280..15178490 | 317..107 | 1055 | 100 | Minus |
3R | 32079331 | 3R | 15176161..15176295 | 520..386 | 675 | 100 | Minus |
3R | 32079331 | 3R | 15179038..15179129 | 108..17 | 460 | 100 | Minus |
3R | 32079331 | 3R | 15176362..15176437 | 389..314 | 365 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:22:56 has no hits.
BO15816.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:13:47 Download gff for
BO15816.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mf-RC | 1..507 | 17..524 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:32:34 Download gff for
BO15816.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mf-RC | 105..621 | 7..524 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:51:07 Download gff for
BO15816.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mf-RC | 120..618 | 22..522 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:13:48 Download gff for
BO15816.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mf-RC | 105..621 | 7..524 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:19:29 Download gff for
BO15816.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mf-RC | 120..618 | 22..522 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:19:29 Download gff for
BO15816.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15176159..15176293 | 388..522 | 98 | <- | Minus |
3R | 15176364..15176433 | 318..387 | 100 | <- | Minus |
3R | 15178280..15178489 | 108..317 | 100 | <- | Minus |
3R | 15179039..15179124 | 22..107 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:51:07 Download gff for
BO15816.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11001881..11002015 | 388..522 | 98 | <- | Minus |
arm_3R | 11002086..11002155 | 318..387 | 100 | <- | Minus |
arm_3R | 11004002..11004211 | 108..317 | 100 | <- | Minus |
arm_3R | 11004761..11004846 | 22..107 | 100 | | Minus |
BO15816.pep Sequence
Translation from 16 to 538
> BO15816.pep
MFKNHLEMIGRNESPSKKAKFWQSYIRSLKGSEDIRAHEAPRASRPYSSY
LDSPSYRSIYDEPATANERVQSSGYRYLPVSRDTYGYSPRAIYDHHYSRT
IPANYDAEKAWNDHLKRMQEIERRYPSRYGLYLRDKPLTPNSLVPLEYEP
EDKLLAELNKGKDIKDIFASFLDH
BO15816.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:16:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mf-PQ | 168 | CG6803-PQ | 1..168 | 1..168 | 898 | 100 | Plus |
Mf-PC | 168 | CG6803-PC | 1..168 | 1..168 | 898 | 100 | Plus |
Mf-PI | 230 | CG6803-PI | 1..162 | 1..162 | 858 | 98.8 | Plus |
Mf-PH | 236 | CG6803-PH | 1..162 | 1..162 | 858 | 98.8 | Plus |
Mf-PE | 166 | CG6803-PE | 1..160 | 1..160 | 856 | 100 | Plus |