BO15821.complete Sequence
1006 bp (1006 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633594
> BO15821.complete
GAAGTTATCAGTCGACATGTTCACCAAGTCAATGCTGAGCTTCTCCCTGG
TCGTGGCCCTCTTCGTTGTCTGCCACGCCAGTCCCGTTCCGGATAATAAT
GGCAAGTATACGGTTCCACAGCAATCCTCTAACGATGGCAAGTATCGCCC
CAGCGACGATGGGAAGTACCATGGGAATTCGCAGAACGAAGGCCGGAGTG
GTTCGCAAGAAAGTATAGGTCGCTATCATCACATGCCGATTCCCTACAGA
CATGTGAGCGATCAGCGTGAGCTTGGAAAATACCATCACATTCCCTATCC
CTATGACGGAGGCTATGGACCCTACGCTGGTTCGAATATTCCCTATGTCC
ATGACGACAGGCCTTACAACCACGACCTGTACACAAGCACGACCACCAAG
AAACCAACCACGACCACCAAAAGGACGACAACCTCGACCACCACCACCAC
CACCACGCCCCGCAATATTCTGTTCAACTACGATGATGAGGGTCGCCACA
AGATCCTGCACAAGGAAGAGGTCCGCAAACAGGACAAATACGATCACTCT
TACCTGACTGAGAATGGAATCTATGGCGAGGAGCAGGCCAAGCTTCACCA
CACCGGAGGCACACATGCCAAGGGATTCTATGAGTACACCGGTGACGATG
GCAAGCTTTATCGCGTAAACTACGCCTCCAACGATGGCGGCTTCATGCCC
CAGGGAGACCACATTCACCCGATCCCCGATGCCATTGTCCGTGCCCTCAA
GTACGTGGAGGAGCAGCACAAGATCAACGGTGGGGCTCAGTTCGACCATC
GCGGCTTCCGCATCAATCACATGACCAAGGACCTTAAGGCGCAGATCAAG
GCGATCCATCTGGAGGAGATGCCCAAGGAGCTGACCGAGCAGATCCATAT
GCTGGAGCACGAGGTGGAGCTCGCCGAGGAGGAGGAGCGCGAGGAGCAGG
CCGCATTGGAGCGACTCCGCCAGGCAGCAAAGTCCCACGCAAGCTTTCTA
GACCAT
BO15821.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:01:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr49Ac-RC | 975 | CG8502-PC | 1..972 | 17..988 | 4860 | 100 | Plus |
| Cpr49Ac-RA | 885 | CG8502-PA | 85..882 | 191..988 | 3990 | 100 | Plus |
| Cpr49Ac-RG | 948 | CG8502-PG | 174..945 | 217..988 | 3860 | 100 | Plus |
| Cpr49Ac-RA | 885 | CG8502-PA | 1..87 | 17..103 | 435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:01:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr49Ac-RC | 1434 | CG8502-RC | 96..1069 | 15..988 | 4870 | 100 | Plus |
| Cpr49Ac-RA | 1344 | CG8502-RA | 182..979 | 191..988 | 3990 | 100 | Plus |
| Cpr49Ac-RG | 1701 | CG8502-RG | 565..1336 | 217..988 | 3860 | 100 | Plus |
| Cpr49Ac-RA | 1344 | CG8502-RA | 96..184 | 15..103 | 445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:01:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12389254..12389692 | 550..988 | 2195 | 100 | Plus |
| 2R | 25286936 | 2R | 12388923..12389086 | 386..549 | 820 | 100 | Plus |
| 2R | 25286936 | 2R | 12388298..12388450 | 217..369 | 765 | 100 | Plus |
| 2R | 25286936 | 2R | 12387381..12387518 | 55..192 | 690 | 100 | Plus |
| 2R | 25286936 | 2R | 12387055..12387096 | 15..56 | 210 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 17:01:31 has no hits.
BO15821.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:59:46 Download gff for
BO15821.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr49Ac-RC | 1..975 | 17..992 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:31:50 Download gff for
BO15821.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr49Ac-RC | 72..1061 | 10..1001 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:17 Download gff for
BO15821.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr49Ac-RC | 103..1069 | 22..990 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:59:47 Download gff for
BO15821.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr49Ac-RC | 72..1061 | 10..1001 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:32:38 Download gff for
BO15821.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr49Ac-RC | 103..1069 | 22..990 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:32:38 Download gff for
BO15821.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12387062..12387095 | 22..55 | 100 | -> | Plus |
| 2R | 12387382..12387517 | 56..191 | 100 | -> | Plus |
| 2R | 12387913..12387939 | 192..218 | 100 | -> | Plus |
| 2R | 12388300..12388450 | 219..369 | 100 | -> | Plus |
| 2R | 12388518..12388533 | 370..385 | 100 | -> | Plus |
| 2R | 12388923..12389086 | 386..549 | 100 | -> | Plus |
| 2R | 12389254..12389692 | 550..990 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:17 Download gff for
BO15821.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8274567..8274600 | 22..55 | 100 | -> | Plus |
| arm_2R | 8274887..8275022 | 56..191 | 100 | -> | Plus |
| arm_2R | 8275418..8275444 | 192..218 | 100 | -> | Plus |
| arm_2R | 8275805..8275955 | 219..369 | 100 | -> | Plus |
| arm_2R | 8276023..8276038 | 370..385 | 100 | -> | Plus |
| arm_2R | 8276428..8276591 | 386..549 | 100 | -> | Plus |
| arm_2R | 8276759..8277197 | 550..990 | 99 | | Plus |
BO15821.pep Sequence
Translation from 16 to 1006
> BO15821.pep
MFTKSMLSFSLVVALFVVCHASPVPDNNGKYTVPQQSSNDGKYRPSDDGK
YHGNSQNEGRSGSQESIGRYHHMPIPYRHVSDQRELGKYHHIPYPYDGGY
GPYAGSNIPYVHDDRPYNHDLYTSTTTKKPTTTTKRTTTSTTTTTTTPRN
ILFNYDDEGRHKILHKEEVRKQDKYDHSYLTENGIYGEEQAKLHHTGGTH
AKGFYEYTGDDGKLYRVNYASNDGGFMPQGDHIHPIPDAIVRALKYVEEQ
HKINGGAQFDHRGFRINHMTKDLKAQIKAIHLEEMPKELTEQIHMLEHEV
ELAEEEEREEQAALERLRQAAKSHASFLDH
BO15821.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:48:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr49Ac-PC | 324 | CG8502-PC | 1..324 | 1..324 | 1762 | 100 | Plus |
| Cpr49Ac-PG | 315 | CG8502-PG | 1..315 | 1..324 | 1699 | 97.2 | Plus |
| Cpr49Ac-PF | 315 | CG8502-PF | 1..315 | 1..324 | 1699 | 97.2 | Plus |
| Cpr49Ac-PA | 294 | CG8502-PA | 1..294 | 1..324 | 1553 | 90.7 | Plus |
| Cpr49Ac-PE | 285 | CG8502-PE | 1..285 | 1..324 | 1501 | 88 | Plus |
