Clone BO15823 Report

Search the DGRC for BO15823

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:158
Well:23
Vector:pDNR-Dual
Associated Gene/TranscriptCG7694-RA
Protein status:BO15823.pep: validated full length
Sequenced Size:475

Clone Sequence Records

BO15823.3prime Sequence

473 bp (473 high quality bases) assembled on 2006-06-02

> BO15823.3prime
ATGGTCTAGAAAGCTTGCGCCGAACATGGAATCCAAAAGAGTGTTCTCCC
GCTCCCGTCGGTTAGCTTCATCCTGCCTAAACCTGCGCAACTCCTCGTAA
ACAGGATCATCAGTTTCCAGTTCATAGCGACACAGAGGACAGGAATTCGT
CTTCTTCAGCCAGAGCAGGATGCACTCCTCGTGGAACTCGTGCTTGCATG
GAAGGATCCTGTACTTCTGGCCCTCTTCAGCTGGCTCCTTGCACACAGAG
CACTCCAAATCGCCGCCCTCGTCCGATTTGACGATTTCATGAACTGGTAG
CTCCAGAATGGCTCGCTTGGAGGCCTCTGGCACCTCGATCTCCATATCGA
TGCCATTCATGATGGCCAAAACCTGAAGGCGCTTTAGATTTCTGGCCAAA
TCGTTTGCGCCCAGTGGTCCAGTGGGTTCATGACCCAGTTCCTCGAAGTA
GTCGGACATGTCGACTGATAACT

BO15823.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:41:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG7694-PA 444 CG7694-RA 1..441 459..19 2205 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:37:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG7694-RC 631 CG7694-RC 116..557 460..19 2210 100 Minus
CG7694-RB 640 CG7694-RB 125..566 460..19 2210 100 Minus
CG7694-RA 970 CG7694-RA 455..896 460..19 2210 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:37:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18590118..18590427 460..151 1550 100 Minus
3R 32079331 3R 18590519..18590652 152..19 670 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:37:52 has no hits.

BO15823.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:54:48 Download gff for BO15823.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7694-PA 1..444 15..459 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:59:56 Download gff for BO15823.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7694-PA 1..444 15..459 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:51:43 Download gff for BO15823.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7694-RA 451..898 11..460 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:51:43 Download gff for BO15823.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7694-RA 455..902 11..460 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:51:43 Download gff for BO15823.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 18590109..18590427 151..473 98 -> Minus
3R 18590521..18590658 11..150 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:51:43 Download gff for BO15823.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14415831..14416149 151..473 98 -> Minus
arm_3R 14416243..14416380 11..150 97   Minus

BO15823.5prime Sequence

473 bp (473 high quality bases) assembled on 2006-05-30

> BO15823.5prime
GAAGTTATCAGTCGACATGTCCGACTACTTCGAGGAACTGGGTCATGAAC
CCACTGGACCACTGGGCGCAAACGATTTGGCCAGAAATCTAAAGCGCCTT
CAGGTTTTGGCCATCATGAATGGCATCGATATGGAGATCGAGGTGCCAGA
GGCCTCCAAGCGAGCCATTCTGGAGCTACCAGTTCATGAAATCGTCAAAT
CGGACGAGGGCGGCGATTTGGAGTGCTCTGTGTGCAAGGAGCCAGCTGAA
GAGGGCCAGAAGTACAGGATCCTTCCATGCAAGCACGAGTTCCACGAGGA
GTGCATCCTGCTCTGGCTGAAGAAGACGAATTCCTGTCCTCTGTGTCGCT
ATGAACTGGAAACTGATGATCCTGTTTACGAGGAGTTGCGCAGGTTTAGG
CAGGATGAAGCTAACCGACGGGAGCGGGAGAACACTCTTTTGGATTCCAT
GTTCGGCGCAAGCTTTCTAGACC

BO15823.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:41:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG7694-PA 444 CG7694-RA 1..441 17..457 2205 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:37:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG7694-RC 631 CG7694-RC 116..557 16..457 2210 100 Plus
CG7694-RB 640 CG7694-RB 125..566 16..457 2210 100 Plus
CG7694-RA 970 CG7694-RA 455..896 16..457 2210 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:37:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18590118..18590427 16..325 1550 100 Plus
3R 32079331 3R 18590519..18590652 324..457 670 100 Plus
Blast to na_te.dros performed on 2015-02-09 22:37:16 has no hits.

BO15823.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:54:49 Download gff for BO15823.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7694-PA 1..444 17..461 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:59:58 Download gff for BO15823.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7694-PA 1..444 17..461 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:21:57 Download gff for BO15823.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7694-RA 451..898 16..465 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:46:42 Download gff for BO15823.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7694-RA 455..902 16..465 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:46:42 Download gff for BO15823.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 18590109..18590427 2..325 98 -> Plus
3R 18590521..18590658 326..465 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:21:57 Download gff for BO15823.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14415831..14416149 2..325 98 -> Plus
arm_3R 14416243..14416380 326..465 97   Plus

BO15823.complete Sequence

475 bp (475 high quality bases) assembled on 2006-08-24

GenBank Submission: FJ633595

> BO15823.complete
GAAGTTATCAGTCGACATGTCCGACTACTTCGAGGAACTGGGTCATGAAC
CCACTGGACCACTGGGCGCAAACGATTTGGCCAGAAATCTAAAGCGCCTT
CAGGTTTTGGCCATCATGAATGGCATCGATATGGAGATCGAGGTGCCAGA
GGCCTCCAAGCGAGCCATTCTGGAGCTACCAGTTCATGAAATCGTCAAAT
CGGACGAGGGCGGCGATTTGGAGTGCTCTGTGTGCAAGGAGCCAGCTGAA
GAGGGCCAGAAGTACAGGATCCTTCCATGCAAGCACGAGTTCCACGAGGA
GTGCATCCTGCTCTGGCTGAAGAAGACGAATTCCTGTCCTCTGTGTCGCT
ATGAACTGGAAACTGATGATCCTGTTTACGAGGAGTTGCGCAGGTTTAGG
CAGGATGAAGCTAACCGACGGGAGCGGGAGAACACTCTTTTGGATTCCAT
GTTCGGCGCAAGCTTTCTAGACCAT

BO15823.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:09:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG7694-RC 444 CG7694-PC 1..441 17..457 2205 100 Plus
CG7694-RB 444 CG7694-PB 1..441 17..457 2205 100 Plus
CG7694-RA 444 CG7694-PA 1..441 17..457 2205 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:09:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG7694-RC 631 CG7694-RC 116..557 16..457 2210 100 Plus
CG7694-RB 640 CG7694-RB 125..566 16..457 2210 100 Plus
CG7694-RA 970 CG7694-RA 455..896 16..457 2210 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:09:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18590118..18590427 16..325 1550 100 Plus
3R 32079331 3R 18590519..18590652 324..457 670 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:09:26 has no hits.

BO15823.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:12:29 Download gff for BO15823.complete
Subject Subject Range Query Range Percent Splice Strand
CG7694-RB 1..444 17..461 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:04:37 Download gff for BO15823.complete
Subject Subject Range Query Range Percent Splice Strand
CG7694-RA 451..898 16..465 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:59 Download gff for BO15823.complete
Subject Subject Range Query Range Percent Splice Strand
CG7694-RA 452..892 17..459 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:12:29 Download gff for BO15823.complete
Subject Subject Range Query Range Percent Splice Strand
CG7694-RA 451..898 16..465 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:02 Download gff for BO15823.complete
Subject Subject Range Query Range Percent Splice Strand
CG7694-RA 456..896 17..459 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:02 Download gff for BO15823.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18590119..18590427 17..325 100 -> Plus
3R 18590521..18590652 326..459 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:59 Download gff for BO15823.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14415841..14416149 17..325 100 -> Plus
arm_3R 14416243..14416374 326..459 98   Plus

BO15823.pep Sequence

Translation from 16 to 475

> BO15823.pep
MSDYFEELGHEPTGPLGANDLARNLKRLQVLAIMNGIDMEIEVPEASKRA
ILELPVHEIVKSDEGGDLECSVCKEPAEEGQKYRILPCKHEFHEECILLW
LKKTNSCPLCRYELETDDPVYEELRRFRQDEANRRERENTLLDSMFGASF
LDH

BO15823.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:54:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG7694-PC 147 CG7694-PC 1..147 1..147 784 100 Plus
CG7694-PB 147 CG7694-PB 1..147 1..147 784 100 Plus
CG7694-PA 147 CG7694-PA 1..147 1..147 784 100 Plus
gol-PE 461 CG2679-PE 278..347 47..114 144 40.8 Plus
gol-PC 461 CG2679-PC 278..347 47..114 144 40.8 Plus