Clone Sequence Records
BO15824.3prime Sequence
551 bp (551 high quality bases) assembled on 2006-06-02
> BO15824.3prime
ATGGTCTAGAAAGCTTGCCTTTATGAGGACCTCCATAGAAGTCCAGAACA
AAGATATTGCTAATTTCCAGTTCGCAAAGGTAGAAATTGTGAGCTTCTTC
ACCTGTCCACTGATCATGGAACGGGCACATGTAGGCTCCATGGGATCCTT
TCCGCCCTCCTTGCATCTTAGGGTCTGCTCGTCACTGAACAGGAGTGTGA
CCTTGTTGTCCTTCTGCCAGTCGGGACCAGTGAAGTCCAAATCGGTTAGC
AGGAATCGAATACGTCCAGTGGACCTGTTATTAGCATCGCTGTCGTCGAT
GGAGATAATGTTGACCATGGGATACCCCTTCACCCGTTCGTTGGTGGAGA
GACTTCCCACAGCCGCCCAATTGGCGCGATGGACCAAATCTCTGGCGATC
TTGGCGTGATTTAACTCTTGCTCTCGCTTATATTCTCTAATTATACGCTC
ATCTTTCCGGCGGGAGTAACCGGAAGAGGGGTCCAGGCTCACGAGGGCCA
AAATCAGGGCGAATAGTAGGGAGTGAAAGGTTTTCATGTCGACTGATAAC
T
BO15824.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:41:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5413-PC | 522 | CREG-RC | 1..519 | 537..19 | 2595 | 100 | Minus |
CG5413-PA | 636 | CREG-RA | 1..444 | 537..94 | 2220 | 100 | Minus |
CG5413-PB | 636 | CREG-RB | 1..444 | 537..94 | 2220 | 100 | Minus |
CG5413-PA | 636 | CREG-RA | 524..601 | 96..19 | 390 | 100 | Minus |
CG5413-PB | 636 | CREG-RB | 524..601 | 96..19 | 390 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:04:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CREG-RC | 823 | CG5413-RC | 50..569 | 538..19 | 2600 | 100 | Minus |
CREG-RD | 962 | CG5413-RD | 107..551 | 538..94 | 2225 | 100 | Minus |
CREG-RB | 967 | CG5413-RB | 112..556 | 538..94 | 2225 | 100 | Minus |
CREG-RD | 962 | CG5413-RD | 631..708 | 96..19 | 390 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:04:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17393816..17394260 | 94..538 | 2225 | 100 | Plus |
3R | 32079331 | 3R | 17393526..17393602 | 19..95 | 385 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 12:04:29 has no hits.
BO15824.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:54:50 Download gff for
BO15824.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CREG-PC | 1..522 | 16..537 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:59:59 Download gff for
BO15824.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5413-PC | 1..522 | 16..537 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:49:29 Download gff for
BO15824.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CREG-RC | 38..574 | 13..549 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:23:12 Download gff for
BO15824.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CREG-RC | 38..574 | 13..549 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:23:12 Download gff for
BO15824.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17393521..17393600 | 13..93 | 96 | <- | Plus |
3R | 17393816..17394272 | 94..549 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:49:29 Download gff for
BO15824.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13219243..13219322 | 13..93 | 96 | <- | Plus |
arm_3R | 13219538..13219994 | 94..549 | 98 | | Plus |
BO15824.5prime Sequence
551 bp (551 high quality bases) assembled on 2006-05-30
> BO15824.5prime
GAAGTTATCAGTCGACATGAAAACCTTTCACTCCCTACTATTCGCCCTGA
TTTTGGCCCTCGTGAGCCTGGACCCCTCTTCCGGTTACTCCCGCCGGAAA
GATGAGCGTATAATTAGAGAATATAAGCGAGAGCAAGAGTTAAATCACGC
CAAGATCGCCAGAGATTTGGTCCATCGCGCCAATTGGGCGGCTGTGGGAA
GTCTCTCCACCAACGAACGGGTGAAGGGGTATCCCATGGTCAACATTATC
TCCATCGACGACAGCGATGCTAATAACAGGTCCACTGGACGTATTCGATT
CCTGCTAACCGATTTGGACTTCACTGGTCCCGACTGGCAGAAGGACAACA
AGGTCACACTCCTGTTCAGTGACGAGCAGACCCTAAGATGCAAGGAGGGC
GGAAAGGATCCCATGGAGCCTACATGTGCCCGTTCCATGATCAGTGGACA
GGTGAAGAAGCTCACAATTTCTACCTTTGCGAACTGGAAATTAGCAATAT
CTTTGTTCTGGACTTCTATGGAGGTCCTCATAAAGGCAAGCTTTCTAGAC
C
BO15824.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:41:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5413-PC | 522 | CREG-RC | 1..519 | 17..535 | 2595 | 100 | Plus |
CG5413-PA | 636 | CREG-RA | 1..444 | 17..460 | 2220 | 100 | Plus |
CG5413-PB | 636 | CREG-RB | 1..444 | 17..460 | 2220 | 100 | Plus |
CG5413-PA | 636 | CREG-RA | 524..601 | 458..535 | 390 | 100 | Plus |
CG5413-PB | 636 | CREG-RB | 524..601 | 458..535 | 390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:43:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CREG-RC | 823 | CG5413-RC | 50..569 | 16..535 | 2600 | 100 | Plus |
CREG-RD | 962 | CG5413-RD | 107..551 | 16..460 | 2225 | 100 | Plus |
CREG-RB | 967 | CG5413-RB | 112..556 | 16..460 | 2225 | 100 | Plus |
CREG-RD | 962 | CG5413-RD | 631..708 | 458..535 | 390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:43:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17393816..17394260 | 460..16 | 2225 | 100 | Minus |
3R | 32079331 | 3R | 17393526..17393602 | 535..459 | 385 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:43:11 has no hits.
BO15824.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:54:51 Download gff for
BO15824.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CREG-PC | 1..522 | 17..538 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:00:01 Download gff for
BO15824.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5413-PC | 1..522 | 17..538 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:31:09 Download gff for
BO15824.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CREG-RC | 38..574 | 5..541 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:45:28 Download gff for
BO15824.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CREG-RC | 38..574 | 5..541 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:45:28 Download gff for
BO15824.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17393521..17393600 | 461..541 | 96 | <- | Minus |
3R | 17393816..17394272 | 5..460 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:31:09 Download gff for
BO15824.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13219243..13219322 | 461..541 | 96 | <- | Minus |
arm_3R | 13219538..13219994 | 5..460 | 98 | | Minus |
BO15824.complete Sequence
553 bp (553 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633596
> BO15824.complete
GAAGTTATCAGTCGACATGAAAACCTTTCACTCCCTACTATTCGCCCTGA
TTTTGGCCCTCGTGAGCCTGGACCCCTCTTCCGGTTACTCCCGCCGGAAA
GATGAGCGTATAATTAGAGAATATAAGCGAGAGCAAGAGTTAAATCACGC
CAAGATCGCCAGAGATTTGGTCCATCGCGCCAATTGGGCGGCTGTGGGAA
GTCTCTCCACCAACGAACGGGTGAAGGGGTATCCCATGGTCAACATTATC
TCCATCGACGACAGCGATGCTAATAACAGGTCCACTGGACGTATTCGATT
CCTGCTAACCGATTTGGACTTCACTGGTCCCGACTGGCAGAAGGACAACA
AGGTCACACTCCTGTTCAGTGACGAGCAGACCCTAAGATGCAAGGAGGGC
GGAAAGGATCCCATGGAGCCTACATGTGCCCGTTCCATGATCAGTGGACA
GGTGAAGAAGCTCACAATTTCTACCTTTGCGAACTGGAAATTAGCAATAT
CTTTGTTCTGGACTTCTATGGAGGTCCTCATAAAGGCAAGCTTTCTAGAC
CAT
BO15824.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:57:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CREG-RC | 522 | CG5413-PC | 1..519 | 17..535 | 2595 | 100 | Plus |
CREG-RD | 636 | CG5413-PD | 1..444 | 17..460 | 2220 | 100 | Plus |
CREG-RB | 636 | CG5413-PB | 1..444 | 17..460 | 2220 | 100 | Plus |
CREG-RD | 636 | CG5413-PD | 524..601 | 458..535 | 390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:57:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CREG-RC | 823 | CG5413-RC | 50..569 | 16..535 | 2600 | 100 | Plus |
CREG-RD | 962 | CG5413-RD | 107..551 | 16..460 | 2225 | 100 | Plus |
CREG-RB | 967 | CG5413-RB | 112..556 | 16..460 | 2225 | 100 | Plus |
CREG-RD | 962 | CG5413-RD | 631..708 | 458..535 | 390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:57:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17393816..17394260 | 460..16 | 2225 | 100 | Minus |
3R | 32079331 | 3R | 17393526..17393602 | 535..459 | 385 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:57:26 has no hits.
BO15824.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:54:30 Download gff for
BO15824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CREG-RC | 1..522 | 17..538 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:26:45 Download gff for
BO15824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CREG-RC | 11..547 | 5..541 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:14:28 Download gff for
BO15824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CREG-RC | 51..569 | 17..537 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:54:31 Download gff for
BO15824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CREG-RC | 11..547 | 5..541 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:29:26 Download gff for
BO15824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CREG-RC | 51..569 | 17..537 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:29:26 Download gff for
BO15824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17393523..17393600 | 461..537 | 97 | <- | Minus |
3R | 17393816..17394259 | 17..460 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:14:28 Download gff for
BO15824.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13219245..13219322 | 461..537 | 97 | <- | Minus |
arm_3R | 13219538..13219981 | 17..460 | 100 | | Minus |
BO15824.pep Sequence
Translation from 16 to 553
> BO15824.pep
MKTFHSLLFALILALVSLDPSSGYSRRKDERIIREYKREQELNHAKIARD
LVHRANWAAVGSLSTNERVKGYPMVNIISIDDSDANNRSTGRIRFLLTDL
DFTGPDWQKDNKVTLLFSDEQTLRCKEGGKDPMEPTCARSMISGQVKKLT
ISTFANWKLAISLFWTSMEVLIKASFLDH
BO15824.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:21:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CREG-PC | 173 | CG5413-PC | 1..173 | 1..173 | 891 | 100 | Plus |
CREG-PD | 211 | CG5413-PD | 1..149 | 1..149 | 766 | 99.3 | Plus |
CREG-PB | 211 | CG5413-PB | 1..149 | 1..149 | 766 | 99.3 | Plus |
CREG-PA | 211 | CG5413-PA | 1..149 | 1..149 | 766 | 99.3 | Plus |