Clone BO15824 Report

Search the DGRC for BO15824

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:158
Well:24
Vector:pDNR-Dual
Associated Gene/TranscriptCREG-RC
Protein status:BO15824.pep: validated full length
Sequenced Size:553

Clone Sequence Records

BO15824.3prime Sequence

551 bp (551 high quality bases) assembled on 2006-06-02

> BO15824.3prime
ATGGTCTAGAAAGCTTGCCTTTATGAGGACCTCCATAGAAGTCCAGAACA
AAGATATTGCTAATTTCCAGTTCGCAAAGGTAGAAATTGTGAGCTTCTTC
ACCTGTCCACTGATCATGGAACGGGCACATGTAGGCTCCATGGGATCCTT
TCCGCCCTCCTTGCATCTTAGGGTCTGCTCGTCACTGAACAGGAGTGTGA
CCTTGTTGTCCTTCTGCCAGTCGGGACCAGTGAAGTCCAAATCGGTTAGC
AGGAATCGAATACGTCCAGTGGACCTGTTATTAGCATCGCTGTCGTCGAT
GGAGATAATGTTGACCATGGGATACCCCTTCACCCGTTCGTTGGTGGAGA
GACTTCCCACAGCCGCCCAATTGGCGCGATGGACCAAATCTCTGGCGATC
TTGGCGTGATTTAACTCTTGCTCTCGCTTATATTCTCTAATTATACGCTC
ATCTTTCCGGCGGGAGTAACCGGAAGAGGGGTCCAGGCTCACGAGGGCCA
AAATCAGGGCGAATAGTAGGGAGTGAAAGGTTTTCATGTCGACTGATAAC
T

BO15824.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:41:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG5413-PC 522 CREG-RC 1..519 537..19 2595 100 Minus
CG5413-PA 636 CREG-RA 1..444 537..94 2220 100 Minus
CG5413-PB 636 CREG-RB 1..444 537..94 2220 100 Minus
CG5413-PA 636 CREG-RA 524..601 96..19 390 100 Minus
CG5413-PB 636 CREG-RB 524..601 96..19 390 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:04:31
Subject Length Description Subject Range Query Range Score Percent Strand
CREG-RC 823 CG5413-RC 50..569 538..19 2600 100 Minus
CREG-RD 962 CG5413-RD 107..551 538..94 2225 100 Minus
CREG-RB 967 CG5413-RB 112..556 538..94 2225 100 Minus
CREG-RD 962 CG5413-RD 631..708 96..19 390 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:04:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17393816..17394260 94..538 2225 100 Plus
3R 32079331 3R 17393526..17393602 19..95 385 100 Plus
Blast to na_te.dros performed on 2015-02-11 12:04:29 has no hits.

BO15824.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:54:50 Download gff for BO15824.3prime
Subject Subject Range Query Range Percent Splice Strand
CREG-PC 1..522 16..537 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:59:59 Download gff for BO15824.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5413-PC 1..522 16..537 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:49:29 Download gff for BO15824.3prime
Subject Subject Range Query Range Percent Splice Strand
CREG-RC 38..574 13..549 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:23:12 Download gff for BO15824.3prime
Subject Subject Range Query Range Percent Splice Strand
CREG-RC 38..574 13..549 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:23:12 Download gff for BO15824.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 17393521..17393600 13..93 96 <- Plus
3R 17393816..17394272 94..549 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:49:29 Download gff for BO15824.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13219243..13219322 13..93 96 <- Plus
arm_3R 13219538..13219994 94..549 98   Plus

BO15824.5prime Sequence

551 bp (551 high quality bases) assembled on 2006-05-30

> BO15824.5prime
GAAGTTATCAGTCGACATGAAAACCTTTCACTCCCTACTATTCGCCCTGA
TTTTGGCCCTCGTGAGCCTGGACCCCTCTTCCGGTTACTCCCGCCGGAAA
GATGAGCGTATAATTAGAGAATATAAGCGAGAGCAAGAGTTAAATCACGC
CAAGATCGCCAGAGATTTGGTCCATCGCGCCAATTGGGCGGCTGTGGGAA
GTCTCTCCACCAACGAACGGGTGAAGGGGTATCCCATGGTCAACATTATC
TCCATCGACGACAGCGATGCTAATAACAGGTCCACTGGACGTATTCGATT
CCTGCTAACCGATTTGGACTTCACTGGTCCCGACTGGCAGAAGGACAACA
AGGTCACACTCCTGTTCAGTGACGAGCAGACCCTAAGATGCAAGGAGGGC
GGAAAGGATCCCATGGAGCCTACATGTGCCCGTTCCATGATCAGTGGACA
GGTGAAGAAGCTCACAATTTCTACCTTTGCGAACTGGAAATTAGCAATAT
CTTTGTTCTGGACTTCTATGGAGGTCCTCATAAAGGCAAGCTTTCTAGAC
C

BO15824.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:41:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG5413-PC 522 CREG-RC 1..519 17..535 2595 100 Plus
CG5413-PA 636 CREG-RA 1..444 17..460 2220 100 Plus
CG5413-PB 636 CREG-RB 1..444 17..460 2220 100 Plus
CG5413-PA 636 CREG-RA 524..601 458..535 390 100 Plus
CG5413-PB 636 CREG-RB 524..601 458..535 390 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:43:12
Subject Length Description Subject Range Query Range Score Percent Strand
CREG-RC 823 CG5413-RC 50..569 16..535 2600 100 Plus
CREG-RD 962 CG5413-RD 107..551 16..460 2225 100 Plus
CREG-RB 967 CG5413-RB 112..556 16..460 2225 100 Plus
CREG-RD 962 CG5413-RD 631..708 458..535 390 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:43:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17393816..17394260 460..16 2225 100 Minus
3R 32079331 3R 17393526..17393602 535..459 385 100 Minus
Blast to na_te.dros performed on 2015-02-12 19:43:11 has no hits.

BO15824.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:54:51 Download gff for BO15824.5prime
Subject Subject Range Query Range Percent Splice Strand
CREG-PC 1..522 17..538 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:00:01 Download gff for BO15824.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5413-PC 1..522 17..538 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:31:09 Download gff for BO15824.5prime
Subject Subject Range Query Range Percent Splice Strand
CREG-RC 38..574 5..541 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:45:28 Download gff for BO15824.5prime
Subject Subject Range Query Range Percent Splice Strand
CREG-RC 38..574 5..541 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:45:28 Download gff for BO15824.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 17393521..17393600 461..541 96 <- Minus
3R 17393816..17394272 5..460 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:31:09 Download gff for BO15824.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13219243..13219322 461..541 96 <- Minus
arm_3R 13219538..13219994 5..460 98   Minus

BO15824.complete Sequence

553 bp (553 high quality bases) assembled on 2006-08-24

GenBank Submission: FJ633596

> BO15824.complete
GAAGTTATCAGTCGACATGAAAACCTTTCACTCCCTACTATTCGCCCTGA
TTTTGGCCCTCGTGAGCCTGGACCCCTCTTCCGGTTACTCCCGCCGGAAA
GATGAGCGTATAATTAGAGAATATAAGCGAGAGCAAGAGTTAAATCACGC
CAAGATCGCCAGAGATTTGGTCCATCGCGCCAATTGGGCGGCTGTGGGAA
GTCTCTCCACCAACGAACGGGTGAAGGGGTATCCCATGGTCAACATTATC
TCCATCGACGACAGCGATGCTAATAACAGGTCCACTGGACGTATTCGATT
CCTGCTAACCGATTTGGACTTCACTGGTCCCGACTGGCAGAAGGACAACA
AGGTCACACTCCTGTTCAGTGACGAGCAGACCCTAAGATGCAAGGAGGGC
GGAAAGGATCCCATGGAGCCTACATGTGCCCGTTCCATGATCAGTGGACA
GGTGAAGAAGCTCACAATTTCTACCTTTGCGAACTGGAAATTAGCAATAT
CTTTGTTCTGGACTTCTATGGAGGTCCTCATAAAGGCAAGCTTTCTAGAC
CAT

BO15824.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:57:27
Subject Length Description Subject Range Query Range Score Percent Strand
CREG-RC 522 CG5413-PC 1..519 17..535 2595 100 Plus
CREG-RD 636 CG5413-PD 1..444 17..460 2220 100 Plus
CREG-RB 636 CG5413-PB 1..444 17..460 2220 100 Plus
CREG-RD 636 CG5413-PD 524..601 458..535 390 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:57:29
Subject Length Description Subject Range Query Range Score Percent Strand
CREG-RC 823 CG5413-RC 50..569 16..535 2600 100 Plus
CREG-RD 962 CG5413-RD 107..551 16..460 2225 100 Plus
CREG-RB 967 CG5413-RB 112..556 16..460 2225 100 Plus
CREG-RD 962 CG5413-RD 631..708 458..535 390 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:57:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17393816..17394260 460..16 2225 100 Minus
3R 32079331 3R 17393526..17393602 535..459 385 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:57:26 has no hits.

BO15824.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:54:30 Download gff for BO15824.complete
Subject Subject Range Query Range Percent Splice Strand
CREG-RC 1..522 17..538 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:26:45 Download gff for BO15824.complete
Subject Subject Range Query Range Percent Splice Strand
CREG-RC 11..547 5..541 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:14:28 Download gff for BO15824.complete
Subject Subject Range Query Range Percent Splice Strand
CREG-RC 51..569 17..537 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:54:31 Download gff for BO15824.complete
Subject Subject Range Query Range Percent Splice Strand
CREG-RC 11..547 5..541 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:29:26 Download gff for BO15824.complete
Subject Subject Range Query Range Percent Splice Strand
CREG-RC 51..569 17..537 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:29:26 Download gff for BO15824.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17393523..17393600 461..537 97 <- Minus
3R 17393816..17394259 17..460 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:14:28 Download gff for BO15824.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13219245..13219322 461..537 97 <- Minus
arm_3R 13219538..13219981 17..460 100   Minus

BO15824.pep Sequence

Translation from 16 to 553

> BO15824.pep
MKTFHSLLFALILALVSLDPSSGYSRRKDERIIREYKREQELNHAKIARD
LVHRANWAAVGSLSTNERVKGYPMVNIISIDDSDANNRSTGRIRFLLTDL
DFTGPDWQKDNKVTLLFSDEQTLRCKEGGKDPMEPTCARSMISGQVKKLT
ISTFANWKLAISLFWTSMEVLIKASFLDH

BO15824.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:21:52
Subject Length Description Subject Range Query Range Score Percent Strand
CREG-PC 173 CG5413-PC 1..173 1..173 891 100 Plus
CREG-PD 211 CG5413-PD 1..149 1..149 766 99.3 Plus
CREG-PB 211 CG5413-PB 1..149 1..149 766 99.3 Plus
CREG-PA 211 CG5413-PA 1..149 1..149 766 99.3 Plus