Clone Sequence Records
BO15825.3prime Sequence
887 bp (701 high quality bases) assembled on 2006-06-02
> BO15825.3prime
ATGGTCTAGAAAGCTTGCACTGTAAAGATCATCGTCGCCGTTGTCGCCGG
GCGAGTTAACTGGCAAGTTGTTACCAGATCCTGAGGTGTTGCCGGTTTGA
CCGGGGAATCTGAAGTTCTGTCCGAATCCACGGGACTGCTGCAAAGTCTG
GGCAAACATCTCGTACTTCCTGATGTCATTATCGGACACCGAACGGCGAG
CGAACTTCATGGCCTCCTCGAAGTGGGCGCTAGTAATCTCCGGCACTGGA
TCGTCCTCGTCCATGTCCATCGCGGAGTTCTGATTTTCGGCGCGCTCCTT
CTCGCGACGAATTTCAGCCTCGATGGCCTGTCGGATGGCCAGCTTGCAAG
CCCGCTGGCAGATCTCGGTCAGATCGGCGCCAGAGAAGCCCTGCGTCACC
TTGGCGATGTAGGTAAGGTCTACTTCCTTGGCCAGCGGCGACTTGCGCAA
GTTAGCCTTCAGGATAGCCTCACGCGATTTGTCGTCGGGCAGCGGAATAT
AGATCAACTGATCCAGACGGCCCGGACGGAGGATGGCCGGATCGATAATG
TCCGGGCGATTGGTGGCTCCGATGATGAACACATTCTTCTTGGCTCCCAT
GCCATCCATTTCGGTAAGGATCTGATTGATCACACGATCAGCGGCGCCGC
CAGCATCGCCGACATTACCGCCACGGGCTTTGGCGATCGAGTCCAGCTCG
TCGAAGAAGAGCACACAAGGAGCCGCCGAGCGGGCCTTATCGAAGATGTC
GCGCACGTTGGCCTCAGACTCGCCGAACCACATGGTCAGCAGTTCGGGAC
CCTTGACTGAGATGAAGTTCGCCTGGCACTCGTTGGCAATGGCCTTGGCC
AGCAGCGTCTTACCGCAACCAGGGGGTCCGTAGAAAA
BO15825.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:41:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2331-PA | 2406 | TER94-RA | 1535..2403 | 887..19 | 4345 | 100 | Minus |
CG2331-PB | 894 | TER94-RB | 23..891 | 887..19 | 4345 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:06:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TER94-RD | 3125 | CG2331-RD | 1772..2640 | 887..19 | 4345 | 100 | Minus |
TER94-RC | 3058 | CG2331-RC | 1705..2573 | 887..19 | 4345 | 100 | Minus |
TER94-RA | 3016 | CG2331-RA | 1663..2531 | 887..19 | 4345 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:06:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9992074..9992696 | 887..265 | 3115 | 100 | Minus |
2R | 25286936 | 2R | 9992763..9992917 | 264..110 | 775 | 100 | Minus |
2R | 25286936 | 2R | 9992981..9993074 | 112..19 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 12:06:32 has no hits.
BO15825.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:54:52 Download gff for
BO15825.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TER94-PB | 27..894 | 18..883 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:00:02 Download gff for
BO15825.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2331-PB | 27..894 | 18..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:49:57 Download gff for
BO15825.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TER94-RA | 1667..2542 | 6..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:30:48 Download gff for
BO15825.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TER94-RA | 1667..2542 | 6..883 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:30:48 Download gff for
BO15825.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9992078..9992696 | 265..883 | 100 | -> | Minus |
2R | 9992763..9992917 | 110..264 | 100 | -> | Minus |
2R | 9992984..9993085 | 6..109 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:49:57 Download gff for
BO15825.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5879583..5880201 | 265..883 | 100 | -> | Minus |
arm_2R | 5880268..5880422 | 110..264 | 100 | -> | Minus |
arm_2R | 5880489..5880590 | 6..109 | 96 | | Minus |
BO15825.5prime Sequence
899 bp (812 high quality bases) assembled on 2006-05-30
> BO15825.5prime
GAAGTTATCAGTCGACATGCAGCCCAGTCGCGGTGTCCTTTTCTACGGAC
CCCCTGGTTGCGGTAAGACGCTGCTGGCCAAGGCCATTGCCAACGAGTGC
CAGGCGAACTTCATCTCAGTCAAGGGTCCCGAACTGCTGACCATGTGGTT
CGGCGAGTCTGAGGCCAACGTGCGCGACATCTTCGATAAGGCCCGCTCGG
CGGCTCCTTGTGTGCTCTTCTTCGACGAGCTGGACTCGATCGCCAAAGCC
CGTGGCGGTAATGTCGGCGATGCTGGCGGCGCCGCTGATCGTGTGATCAA
TCAGATCCTTACCGAAATGGATGGCATGGGAGCCAAGAAGAATGTGTTCA
TCATCGGAGCCACCAATCGCCCGGACATTATCGATCCGGCCATCCTCCGT
CCGGGCCGTCTGGATCAGTTGATCTATATTCCGCTGCCCGACGACAAATC
GCGTGAGGCTATCCTGAAGGCTAACTTGCGCAAGTCGCCGCTGGCCAAGG
AAGTAGACCTTACCTACATCGCCAAGGTGACGCAGGGCTTCTCTGGCGCC
GATCTGACCGAGATCTGCCAGCGGGCTTGCAAGCTGGCCATCCGACAGGC
CATCGAGGCTGAAATTCGTCGCGAGAAGGAGCGCGCCGAAAATCAGAACT
CCGCGATGGACATGGACGAGGACGATCCAGTGCCGGAGATTACTAGCGCC
CACTTCGAGGAGGCCATGAAGTTCGCTCGCCGTTCGGTGTCCGATAATGA
CATCAGGAAGTACGAGATGTTTGCCCAGACTTTGCAGCAGTCCCGTGGAT
TCGGACAGAACTTCAGAATCCCCGGTCAAACCGGCAACACCTCAGGATCT
GGTAACAACTTGCCAGTTAACTCGCCCGGCGACAACGGCGACGATGATC
BO15825.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:41:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2331-PA | 2406 | TER94-RA | 1512..2395 | 16..899 | 4395 | 99.8 | Plus |
CG2331-PB | 894 | TER94-RB | 1..883 | 17..899 | 4390 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:36:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TER94-RD | 3125 | CG2331-RD | 1749..2632 | 16..899 | 4405 | 99.9 | Plus |
TER94-RC | 3058 | CG2331-RC | 1682..2565 | 16..899 | 4405 | 99.9 | Plus |
TER94-RA | 3016 | CG2331-RA | 1640..2523 | 16..899 | 4405 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:36:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9992051..9992696 | 16..661 | 3230 | 100 | Plus |
2R | 25286936 | 2R | 9992763..9992917 | 662..816 | 775 | 100 | Plus |
2R | 25286936 | 2R | 9992981..9993066 | 814..899 | 415 | 98.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:36:49 has no hits.
BO15825.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:54:53 Download gff for
BO15825.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TER94-PA | 1512..2395 | 16..899 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:00:03 Download gff for
BO15825.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2331-PA | 1512..2395 | 16..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:30:30 Download gff for
BO15825.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TER94-RA | 1640..2523 | 16..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:57:20 Download gff for
BO15825.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TER94-RA | 1640..2523 | 16..899 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:57:20 Download gff for
BO15825.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9992051..9992696 | 16..661 | 100 | -> | Plus |
2R | 9992763..9992917 | 662..816 | 100 | -> | Plus |
2R | 9992984..9993066 | 817..899 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:30:30 Download gff for
BO15825.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5879556..5880201 | 16..661 | 100 | -> | Plus |
arm_2R | 5880268..5880422 | 662..816 | 100 | -> | Plus |
arm_2R | 5880489..5880571 | 817..899 | 98 | | Plus |
BO15825.complete Sequence
925 bp (925 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633597
> BO15825.complete
GAAGTTATCAGTCGACATGCAGCCCAGTCGCGGTGTCCTTTTCTACGGAC
CCCCTGGTTGCGGTAAGACGCTGCTGGCCAAGGCCATTGCCAACGAGTGC
CAGGCGAACTTCATCTCAGTCAAGGGTCCCGAACTGCTGACCATGTGGTT
CGGCGAGTCTGAGGCCAACGTGCGCGACATCTTCGATAAGGCCCGCTCGG
CGGCTCCTTGTGTGCTCTTCTTCGACGAGCTGGACTCGATCGCCAAAGCC
CGTGGCGGTAATGTCGGCGATGCTGGCGGCGCCGCTGATCGTGTGATCAA
TCAGATCCTTACCGAAATGGATGGCATGGGAGCCAAGAAGAATGTGTTCA
TCATCGGAGCCACCAATCGCCCGGACATTATCGATCCGGCCATCCTCCGT
CCGGGCCGTCTGGATCAGTTGATCTATATTCCGCTGCCCGACGACAAATC
GCGTGAGGCTATCCTGAAGGCTAACTTGCGCAAGTCGCCGCTGGCCAAGG
AAGTAGACCTTACCTACATCGCCAAGGTGACGCAGGGCTTCTCTGGCGCC
GATCTGACCGAGATCTGCCAGCGGGCTTGCAAGCTGGCCATCCGACAGGC
CATCGAGGCTGAAATTCGTCGCGAGAAGGAGCGCGCCGAAAATCAGAACT
CCGCGATGGACATGGACGAGGACGATCCAGTGCCGGAGATTACTAGCGCC
CACTTCGAGGAGGCCATGAAGTTCGCTCGCCGTTCGGTGTCCGATAATGA
CATCAGGAAGTACGAGATGTTTGCCCAGACTTTGCAGCAGTCCCGTGGAT
TCGGACAGAACTTCAGATTCCCCGGTCAAACCGGCAACACCTCAGGATCT
GGTAACAACTTGCCAGTTAACTCGCCCGGCGACAACGGCGACGATGATCT
TTACAGTGCAAGCTTTCTAGACCAT
BO15825.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:36:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TER94-RD | 2280 | CG2331-PD | 1386..2277 | 16..907 | 4460 | 100 | Plus |
TER94-RC | 2481 | CG2331-PC | 1587..2478 | 16..907 | 4460 | 100 | Plus |
TER94-RA | 2406 | CG2331-PA | 1512..2403 | 16..907 | 4460 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:36:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TER94-RD | 3125 | CG2331-RD | 1749..2640 | 16..907 | 4460 | 100 | Plus |
TER94-RC | 3058 | CG2331-RC | 1682..2573 | 16..907 | 4460 | 100 | Plus |
TER94-RA | 3016 | CG2331-RA | 1640..2531 | 16..907 | 4460 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:36:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9992051..9992696 | 16..661 | 3230 | 100 | Plus |
2R | 25286936 | 2R | 9992763..9992917 | 662..816 | 775 | 100 | Plus |
2R | 25286936 | 2R | 9992981..9993074 | 814..907 | 470 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:36:39 has no hits.
BO15825.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:00:26 Download gff for
BO15825.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TER94-RD | 1386..2280 | 16..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:54:41 Download gff for
BO15825.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TER94-RC | 1587..2489 | 16..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:40:22 Download gff for
BO15825.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TER94-RA | 1641..2531 | 17..909 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:00:27 Download gff for
BO15825.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TER94-RC | 1587..2489 | 16..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:26:17 Download gff for
BO15825.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TER94-RA | 1641..2531 | 17..909 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:26:17 Download gff for
BO15825.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9992052..9992696 | 17..661 | 100 | -> | Plus |
2R | 9992763..9992917 | 662..816 | 100 | -> | Plus |
2R | 9992984..9993074 | 817..909 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:40:22 Download gff for
BO15825.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5879557..5880201 | 17..661 | 100 | -> | Plus |
arm_2R | 5880268..5880422 | 662..816 | 100 | -> | Plus |
arm_2R | 5880489..5880579 | 817..909 | 97 | | Plus |
BO15825.pep Sequence
Translation from 16 to 925
> BO15825.pep
MQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEA
NVRDIFDKARSAAPCVLFFDELDSIAKARGGNVGDAGGAADRVINQILTE
MDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDDKSREAIL
KANLRKSPLAKEVDLTYIAKVTQGFSGADLTEICQRACKLAIRQAIEAEI
RREKERAENQNSAMDMDEDDPVPEITSAHFEEAMKFARRSVSDNDIRKYE
MFAQTLQQSRGFGQNFRFPGQTGNTSGSGNNLPVNSPGDNGDDDLYSASF
LDH
BO15825.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:18:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TER94-PD | 759 | CG2331-PD | 463..759 | 1..297 | 1534 | 100 | Plus |
TER94-PA | 801 | CG2331-PA | 505..801 | 1..297 | 1534 | 100 | Plus |
TER94-PC | 826 | CG2331-PC | 530..826 | 1..297 | 1534 | 100 | Plus |
TER94-PE | 825 | CG2331-PE | 530..825 | 1..297 | 1517 | 99.7 | Plus |
smid-PI | 910 | CG8571-PI | 664..893 | 6..250 | 568 | 48.4 | Plus |
TER94-PD | 759 | CG2331-PD | 190..383 | 1..197 | 412 | 41.6 | Plus |
TER94-PA | 801 | CG2331-PA | 232..425 | 1..197 | 412 | 41.6 | Plus |
TER94-PC | 826 | CG2331-PC | 257..450 | 1..197 | 412 | 41.6 | Plus |
TER94-PE | 825 | CG2331-PE | 257..450 | 1..197 | 412 | 41.6 | Plus |