Clone BO15825 Report

Search the DGRC for BO15825

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:158
Well:25
Vector:pDNR-Dual
Associated Gene/TranscriptTER94-RB
Protein status:BO15825.pep: full length peptide match
Sequenced Size:925

Clone Sequence Records

BO15825.3prime Sequence

887 bp (701 high quality bases) assembled on 2006-06-02

> BO15825.3prime
ATGGTCTAGAAAGCTTGCACTGTAAAGATCATCGTCGCCGTTGTCGCCGG
GCGAGTTAACTGGCAAGTTGTTACCAGATCCTGAGGTGTTGCCGGTTTGA
CCGGGGAATCTGAAGTTCTGTCCGAATCCACGGGACTGCTGCAAAGTCTG
GGCAAACATCTCGTACTTCCTGATGTCATTATCGGACACCGAACGGCGAG
CGAACTTCATGGCCTCCTCGAAGTGGGCGCTAGTAATCTCCGGCACTGGA
TCGTCCTCGTCCATGTCCATCGCGGAGTTCTGATTTTCGGCGCGCTCCTT
CTCGCGACGAATTTCAGCCTCGATGGCCTGTCGGATGGCCAGCTTGCAAG
CCCGCTGGCAGATCTCGGTCAGATCGGCGCCAGAGAAGCCCTGCGTCACC
TTGGCGATGTAGGTAAGGTCTACTTCCTTGGCCAGCGGCGACTTGCGCAA
GTTAGCCTTCAGGATAGCCTCACGCGATTTGTCGTCGGGCAGCGGAATAT
AGATCAACTGATCCAGACGGCCCGGACGGAGGATGGCCGGATCGATAATG
TCCGGGCGATTGGTGGCTCCGATGATGAACACATTCTTCTTGGCTCCCAT
GCCATCCATTTCGGTAAGGATCTGATTGATCACACGATCAGCGGCGCCGC
CAGCATCGCCGACATTACCGCCACGGGCTTTGGCGATCGAGTCCAGCTCG
TCGAAGAAGAGCACACAAGGAGCCGCCGAGCGGGCCTTATCGAAGATGTC
GCGCACGTTGGCCTCAGACTCGCCGAACCACATGGTCAGCAGTTCGGGAC
CCTTGACTGAGATGAAGTTCGCCTGGCACTCGTTGGCAATGGCCTTGGCC
AGCAGCGTCTTACCGCAACCAGGGGGTCCGTAGAAAA

BO15825.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:41:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG2331-PA 2406 TER94-RA 1535..2403 887..19 4345 100 Minus
CG2331-PB 894 TER94-RB 23..891 887..19 4345 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:06:34
Subject Length Description Subject Range Query Range Score Percent Strand
TER94-RD 3125 CG2331-RD 1772..2640 887..19 4345 100 Minus
TER94-RC 3058 CG2331-RC 1705..2573 887..19 4345 100 Minus
TER94-RA 3016 CG2331-RA 1663..2531 887..19 4345 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 12:06:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9992074..9992696 887..265 3115 100 Minus
2R 25286936 2R 9992763..9992917 264..110 775 100 Minus
2R 25286936 2R 9992981..9993074 112..19 470 100 Minus
Blast to na_te.dros performed on 2015-02-11 12:06:32 has no hits.

BO15825.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:54:52 Download gff for BO15825.3prime
Subject Subject Range Query Range Percent Splice Strand
TER94-PB 27..894 18..883 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:00:02 Download gff for BO15825.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2331-PB 27..894 18..883 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:49:57 Download gff for BO15825.3prime
Subject Subject Range Query Range Percent Splice Strand
TER94-RA 1667..2542 6..883 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:30:48 Download gff for BO15825.3prime
Subject Subject Range Query Range Percent Splice Strand
TER94-RA 1667..2542 6..883 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:30:48 Download gff for BO15825.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9992078..9992696 265..883 100 -> Minus
2R 9992763..9992917 110..264 100 -> Minus
2R 9992984..9993085 6..109 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:49:57 Download gff for BO15825.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5879583..5880201 265..883 100 -> Minus
arm_2R 5880268..5880422 110..264 100 -> Minus
arm_2R 5880489..5880590 6..109 96   Minus

BO15825.5prime Sequence

899 bp (812 high quality bases) assembled on 2006-05-30

> BO15825.5prime
GAAGTTATCAGTCGACATGCAGCCCAGTCGCGGTGTCCTTTTCTACGGAC
CCCCTGGTTGCGGTAAGACGCTGCTGGCCAAGGCCATTGCCAACGAGTGC
CAGGCGAACTTCATCTCAGTCAAGGGTCCCGAACTGCTGACCATGTGGTT
CGGCGAGTCTGAGGCCAACGTGCGCGACATCTTCGATAAGGCCCGCTCGG
CGGCTCCTTGTGTGCTCTTCTTCGACGAGCTGGACTCGATCGCCAAAGCC
CGTGGCGGTAATGTCGGCGATGCTGGCGGCGCCGCTGATCGTGTGATCAA
TCAGATCCTTACCGAAATGGATGGCATGGGAGCCAAGAAGAATGTGTTCA
TCATCGGAGCCACCAATCGCCCGGACATTATCGATCCGGCCATCCTCCGT
CCGGGCCGTCTGGATCAGTTGATCTATATTCCGCTGCCCGACGACAAATC
GCGTGAGGCTATCCTGAAGGCTAACTTGCGCAAGTCGCCGCTGGCCAAGG
AAGTAGACCTTACCTACATCGCCAAGGTGACGCAGGGCTTCTCTGGCGCC
GATCTGACCGAGATCTGCCAGCGGGCTTGCAAGCTGGCCATCCGACAGGC
CATCGAGGCTGAAATTCGTCGCGAGAAGGAGCGCGCCGAAAATCAGAACT
CCGCGATGGACATGGACGAGGACGATCCAGTGCCGGAGATTACTAGCGCC
CACTTCGAGGAGGCCATGAAGTTCGCTCGCCGTTCGGTGTCCGATAATGA
CATCAGGAAGTACGAGATGTTTGCCCAGACTTTGCAGCAGTCCCGTGGAT
TCGGACAGAACTTCAGAATCCCCGGTCAAACCGGCAACACCTCAGGATCT
GGTAACAACTTGCCAGTTAACTCGCCCGGCGACAACGGCGACGATGATC

BO15825.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:41:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG2331-PA 2406 TER94-RA 1512..2395 16..899 4395 99.8 Plus
CG2331-PB 894 TER94-RB 1..883 17..899 4390 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:36:50
Subject Length Description Subject Range Query Range Score Percent Strand
TER94-RD 3125 CG2331-RD 1749..2632 16..899 4405 99.9 Plus
TER94-RC 3058 CG2331-RC 1682..2565 16..899 4405 99.9 Plus
TER94-RA 3016 CG2331-RA 1640..2523 16..899 4405 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:36:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9992051..9992696 16..661 3230 100 Plus
2R 25286936 2R 9992763..9992917 662..816 775 100 Plus
2R 25286936 2R 9992981..9993066 814..899 415 98.8 Plus
Blast to na_te.dros performed on 2015-02-12 19:36:49 has no hits.

BO15825.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:54:53 Download gff for BO15825.5prime
Subject Subject Range Query Range Percent Splice Strand
TER94-PA 1512..2395 16..899 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:00:03 Download gff for BO15825.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2331-PA 1512..2395 16..899 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:30:30 Download gff for BO15825.5prime
Subject Subject Range Query Range Percent Splice Strand
TER94-RA 1640..2523 16..899 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:57:20 Download gff for BO15825.5prime
Subject Subject Range Query Range Percent Splice Strand
TER94-RA 1640..2523 16..899 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 23:57:20 Download gff for BO15825.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9992051..9992696 16..661 100 -> Plus
2R 9992763..9992917 662..816 100 -> Plus
2R 9992984..9993066 817..899 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:30:30 Download gff for BO15825.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5879556..5880201 16..661 100 -> Plus
arm_2R 5880268..5880422 662..816 100 -> Plus
arm_2R 5880489..5880571 817..899 98   Plus

BO15825.complete Sequence

925 bp (925 high quality bases) assembled on 2006-08-24

GenBank Submission: FJ633597

> BO15825.complete
GAAGTTATCAGTCGACATGCAGCCCAGTCGCGGTGTCCTTTTCTACGGAC
CCCCTGGTTGCGGTAAGACGCTGCTGGCCAAGGCCATTGCCAACGAGTGC
CAGGCGAACTTCATCTCAGTCAAGGGTCCCGAACTGCTGACCATGTGGTT
CGGCGAGTCTGAGGCCAACGTGCGCGACATCTTCGATAAGGCCCGCTCGG
CGGCTCCTTGTGTGCTCTTCTTCGACGAGCTGGACTCGATCGCCAAAGCC
CGTGGCGGTAATGTCGGCGATGCTGGCGGCGCCGCTGATCGTGTGATCAA
TCAGATCCTTACCGAAATGGATGGCATGGGAGCCAAGAAGAATGTGTTCA
TCATCGGAGCCACCAATCGCCCGGACATTATCGATCCGGCCATCCTCCGT
CCGGGCCGTCTGGATCAGTTGATCTATATTCCGCTGCCCGACGACAAATC
GCGTGAGGCTATCCTGAAGGCTAACTTGCGCAAGTCGCCGCTGGCCAAGG
AAGTAGACCTTACCTACATCGCCAAGGTGACGCAGGGCTTCTCTGGCGCC
GATCTGACCGAGATCTGCCAGCGGGCTTGCAAGCTGGCCATCCGACAGGC
CATCGAGGCTGAAATTCGTCGCGAGAAGGAGCGCGCCGAAAATCAGAACT
CCGCGATGGACATGGACGAGGACGATCCAGTGCCGGAGATTACTAGCGCC
CACTTCGAGGAGGCCATGAAGTTCGCTCGCCGTTCGGTGTCCGATAATGA
CATCAGGAAGTACGAGATGTTTGCCCAGACTTTGCAGCAGTCCCGTGGAT
TCGGACAGAACTTCAGATTCCCCGGTCAAACCGGCAACACCTCAGGATCT
GGTAACAACTTGCCAGTTAACTCGCCCGGCGACAACGGCGACGATGATCT
TTACAGTGCAAGCTTTCTAGACCAT

BO15825.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:36:40
Subject Length Description Subject Range Query Range Score Percent Strand
TER94-RD 2280 CG2331-PD 1386..2277 16..907 4460 100 Plus
TER94-RC 2481 CG2331-PC 1587..2478 16..907 4460 100 Plus
TER94-RA 2406 CG2331-PA 1512..2403 16..907 4460 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:36:41
Subject Length Description Subject Range Query Range Score Percent Strand
TER94-RD 3125 CG2331-RD 1749..2640 16..907 4460 100 Plus
TER94-RC 3058 CG2331-RC 1682..2573 16..907 4460 100 Plus
TER94-RA 3016 CG2331-RA 1640..2531 16..907 4460 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:36:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9992051..9992696 16..661 3230 100 Plus
2R 25286936 2R 9992763..9992917 662..816 775 100 Plus
2R 25286936 2R 9992981..9993074 814..907 470 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:36:39 has no hits.

BO15825.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:00:26 Download gff for BO15825.complete
Subject Subject Range Query Range Percent Splice Strand
TER94-RD 1386..2280 16..908 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:54:41 Download gff for BO15825.complete
Subject Subject Range Query Range Percent Splice Strand
TER94-RC 1587..2489 16..920 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:40:22 Download gff for BO15825.complete
Subject Subject Range Query Range Percent Splice Strand
TER94-RA 1641..2531 17..909 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:00:27 Download gff for BO15825.complete
Subject Subject Range Query Range Percent Splice Strand
TER94-RC 1587..2489 16..920 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:26:17 Download gff for BO15825.complete
Subject Subject Range Query Range Percent Splice Strand
TER94-RA 1641..2531 17..909 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:26:17 Download gff for BO15825.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9992052..9992696 17..661 100 -> Plus
2R 9992763..9992917 662..816 100 -> Plus
2R 9992984..9993074 817..909 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:40:22 Download gff for BO15825.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5879557..5880201 17..661 100 -> Plus
arm_2R 5880268..5880422 662..816 100 -> Plus
arm_2R 5880489..5880579 817..909 97   Plus

BO15825.pep Sequence

Translation from 16 to 925

> BO15825.pep
MQPSRGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEA
NVRDIFDKARSAAPCVLFFDELDSIAKARGGNVGDAGGAADRVINQILTE
MDGMGAKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDDKSREAIL
KANLRKSPLAKEVDLTYIAKVTQGFSGADLTEICQRACKLAIRQAIEAEI
RREKERAENQNSAMDMDEDDPVPEITSAHFEEAMKFARRSVSDNDIRKYE
MFAQTLQQSRGFGQNFRFPGQTGNTSGSGNNLPVNSPGDNGDDDLYSASF
LDH

BO15825.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:18:27
Subject Length Description Subject Range Query Range Score Percent Strand
TER94-PD 759 CG2331-PD 463..759 1..297 1534 100 Plus
TER94-PA 801 CG2331-PA 505..801 1..297 1534 100 Plus
TER94-PC 826 CG2331-PC 530..826 1..297 1534 100 Plus
TER94-PE 825 CG2331-PE 530..825 1..297 1517 99.7 Plus
smid-PI 910 CG8571-PI 664..893 6..250 568 48.4 Plus
TER94-PD 759 CG2331-PD 190..383 1..197 412 41.6 Plus
TER94-PA 801 CG2331-PA 232..425 1..197 412 41.6 Plus
TER94-PC 826 CG2331-PC 257..450 1..197 412 41.6 Plus
TER94-PE 825 CG2331-PE 257..450 1..197 412 41.6 Plus