Clone BO15830 Report

Search the DGRC for BO15830

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:158
Well:30
Vector:pDNR-Dual
Associated Gene/TranscriptCG16964-RA
Protein status:BO15830.pep: validated full length
Sequenced Size:388

Clone Sequence Records

BO15830.5prime Sequence

386 bp (386 high quality bases) assembled on 2006-05-30

> BO15830.5prime
GAAGTTATCAGTCGACATGTTGACCACGATGAGAGGCAGCGCAAAGAAAC
TTCCCATCTGGCCACTGACCCATTTTCGCAGATTCCCGACATTGATTAAA
TCCCACGCAAGTTCCGAAGAAAAATTTGAGCAAAAAGCTGAGGAAGTGGA
CGGCGTATCCAATATGAAGCTACCCTACTTTATAAGCCCAAGGTGTGTTC
AAAATCAGGATCAACTGGTTGATGGGCAGACGAAAATGTTCACCTACAAC
TATCATCCGTTTTCCATTTACGATTTAAATGAAGCTACTCTTCGCGCCAA
GCAAGCAGCAGATGAGTATTCAAAGAAAATTGATGAGTTGCAAAAGCGTA
AGATTGAATATGTAAACAAGGCAAGCTTTCTAGACC

BO15830.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:41:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG16964-PA 357 CG16964-RA 1..354 17..370 1770 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:04:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG16964-RB 793 CG16964-RB 100..453 17..370 1770 100 Plus
CG16964-RA 589 CG16964-RA 76..429 17..370 1770 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:04:17
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11948110..11948463 17..370 1770 100 Plus
Blast to na_te.dros performed on 2015-02-13 01:04:20 has no hits.

BO15830.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:54:55 Download gff for BO15830.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16964-PA 1..357 17..371 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:00:05 Download gff for BO15830.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16964-PA 1..357 17..371 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 08:43:56 Download gff for BO15830.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16964-RA 76..434 17..378 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:06:31 Download gff for BO15830.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16964-RA 76..434 17..378 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:06:31 Download gff for BO15830.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 11948103..11948468 10..378 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 08:43:56 Download gff for BO15830.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11948103..11948468 10..378 97   Plus

BO15830.3prime Sequence

386 bp (386 high quality bases) assembled on 2006-06-02

> BO15830.3prime
ATGGTCTAGAAAGCTTGCCTTGTTTACATATTCAATCTTACGCTTTTGCA
ACTCATCAATTTTCTTTGAATACTCATCTGCTGCTTGCTTGGCGCGAAGA
GTAGCTTCATTTAAATCGTAAATGGAAAACGGATGATAGTTGTAGGTGAA
CATTTTCGTCTGCCCATCAACCAGTTGATCCTGATTTTGAACACACCTTG
GGCTTATAAAGTAGGGTAGCTTCATATTGGATACGCCGTCCACTTCCTCA
GCTTTTTGCTCAAATTTTTCTTCGGAACTTGCGTGGGATTTAATCAATGT
CGGGAATCTGCGAAAATGGGTCAGTGGCCAGATGGGAAGTTTCTTTGCGC
TGCCTCTCATCGTGGTCAACATGTCGACTGATAACT

BO15830.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:41:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG16964-PA 357 CG16964-RA 1..354 372..19 1770 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:10:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG16964-RB 793 CG16964-RB 100..453 372..19 1770 100 Minus
CG16964-RA 589 CG16964-RA 76..429 372..19 1770 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:10:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11948110..11948463 372..19 1770 100 Minus
Blast to na_te.dros performed on 2015-02-12 18:10:16 has no hits.

BO15830.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:54:54 Download gff for BO15830.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16964-PA 1..357 18..372 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:00:04 Download gff for BO15830.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16964-PA 1..357 18..372 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:49:13 Download gff for BO15830.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16964-RA 76..434 11..372 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:19:42 Download gff for BO15830.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16964-RA 76..434 11..372 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:19:42 Download gff for BO15830.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 11948103..11948468 11..379 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:49:13 Download gff for BO15830.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11948103..11948468 11..379 97   Minus

BO15830.complete Sequence

388 bp (388 high quality bases) assembled on 2006-08-24

GenBank Submission: FJ633599

> BO15830.complete
GAAGTTATCAGTCGACATGTTGACCACGATGAGAGGCAGCGCAAAGAAAC
TTCCCATCTGGCCACTGACCCATTTTCGCAGATTCCCGACATTGATTAAA
TCCCACGCAAGTTCCGAAGAAAAATTTGAGCAAAAAGCTGAGGAAGTGGA
CGGCGTATCCAATATGAAGCTACCCTACTTTATAAGCCCAAGGTGTGTTC
AAAATCAGGATCAACTGGTTGATGGGCAGACGAAAATGTTCACCTACAAC
TATCATCCGTTTTCCATTTACGATTTAAATGAAGCTACTCTTCGCGCCAA
GCAAGCAGCAGATGAGTATTCAAAGAAAATTGATGAGTTGCAAAAGCGTA
AGATTGAATATGTAAACAAGGCAAGCTTTCTAGACCAT

BO15830.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:37:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG16964-RB 357 CG16964-PB 1..354 17..370 1770 100 Plus
CG16964-RA 357 CG16964-PA 1..354 17..370 1770 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:37:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG16964-RB 793 CG16964-RB 100..453 17..370 1770 100 Plus
CG16964-RA 589 CG16964-RA 76..429 17..370 1770 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:37:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11948110..11948463 17..370 1770 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:37:01 has no hits.

BO15830.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:52:07 Download gff for BO15830.complete
Subject Subject Range Query Range Percent Splice Strand
CG16964-RA 1..357 17..371 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:07:49 Download gff for BO15830.complete
Subject Subject Range Query Range Percent Splice Strand
CG16964-RA 76..434 17..378 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:57:26 Download gff for BO15830.complete
Subject Subject Range Query Range Percent Splice Strand
CG16964-RA 81..429 22..372 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:52:07 Download gff for BO15830.complete
Subject Subject Range Query Range Percent Splice Strand
CG16964-RA 76..434 17..378 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:22:41 Download gff for BO15830.complete
Subject Subject Range Query Range Percent Splice Strand
CG16964-RA 81..429 22..372 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:22:41 Download gff for BO15830.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11948115..11948463 22..372 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:57:26 Download gff for BO15830.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11948115..11948463 22..372 99   Plus

BO15830.pep Sequence

Translation from 16 to 388

> BO15830.pep
MLTTMRGSAKKLPIWPLTHFRRFPTLIKSHASSEEKFEQKAEEVDGVSNM
KLPYFISPRCVQNQDQLVDGQTKMFTYNYHPFSIYDLNEATLRAKQAADE
YSKKIDELQKRKIEYVNKASFLDH

BO15830.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:01:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG16964-PB 118 CG16964-PB 1..118 1..118 618 100 Plus
CG16964-PA 118 CG16964-PA 1..118 1..118 618 100 Plus