BO15833.complete Sequence
1330 bp (1330 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633600
> BO15833.complete
GAAGTTATCAGTCGACATGGTTATGATGCCCCTCCGGATACTGCTGATCG
CCTTTTCGCTGACGCTAGCCCAGAGCTATGGCGTCGGTGTCAATGGACCG
CGTCCCGTGCGCACTGTAGAAACGCTGACGCAGTGGGGCCAGCTGGAGTT
CGGATTTCCCACGGCGCAGGATCGGGAGAACGCTCAGGCGGCGGGTAATC
TGGTGCCCGAGAACGGCACTCCCATCGATGTGCAGCCACAGTACATGGCC
AATGGCCAGATCAGGCTGTTCACCACTATTCCGCGCTTCGTGACGGGCAT
TCCCTACACCTTGGCCACCGTTTCAGCGACGCAGGGCAGGAATGGCCCGC
TGCTGCAGCCGTATCCCAACTACTCCTGGCACAATGCCAACGGCGAGGAC
TGCGATCGCATAACATCCGCATTCAGAGTGGCTATCACCGAGTGCAACCA
GATGTGGGTGATCGATTCGGGTGTGATTGGAACCACCCAGCTGTGTCCGC
CGCAGTTGCTGCAGTTCGCCCTGGCCACCGATCGCTTGCTGCATCGCTTC
CGCTTCCCGAACGACACATACATCCCGAGTGGATCGCTCTTCATCACGCC
AAATGTACTCGTCCAGGATCCTCCGCCTAGGGGAACCTGCAGTCGCACCA
TGATCTATGTGGCCGATGTGAGCTATCATGGCTTGGTGGTCTACGACCAC
CAGGCGCAGACATCATGGCGGGCTGAGAACCGCTTTATGTATCCCGATCC
GGACTACGGCAAGCACACCATAGCAGGCGAGAGCTTCTACCTGATGGACG
GCATGTTTGCACTGAACAACGACAAGCGCAATCTTTACTTCCATCCGCTG
GCCAGTGCAAGTGAGTATTCCGTGCCACTGAGTGCTTTGAACCGGCAGCA
GAACTGGGCCAACGGGCCGGAGGCTCTGCCGGAGGAGTTCAGGCTGCTAG
GCAGGCGGCGGAGCGAGTGCGCCGCGTCCGCCATCGATGGCAGGAACAAC
GTCTACTGCGTCACCTTCAATCCCGTCAAGCTCTTTGTGTGGAACGTGAA
CTCGCCGTACAATTCGCGAAACTTTGGCAATCTGCCAGCCAAGTCCGATG
ACCTGCAGTTCGTCAGCGGCATGAAGGTGTTGCGGAACCGCGAAGGGCAG
GAGGAACTCTGGATGCTCTCCAATCGCTACCAGAAAATCGCCGCAGGTAC
GCTGAACTCGAAGGAGGTCAACTTCCGCATCCTGCGCCGCAAGTTGGATG
ATGTCCAGGGCGGCGTCTTCTTCTCCAACGACGAGGATCTAACCAATCGC
CTGGTGTTTAGCGCAAGCTTTCTAGACCAT
BO15833.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:07:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yellow-d-RA | 1299 | CG9889-PA | 1..1296 | 17..1312 | 6480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:07:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yellow-d-RA | 1751 | CG9889-RA | 294..1589 | 17..1312 | 6480 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:07:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23379337..23380086 | 434..1183 | 3750 | 100 | Plus |
| 2R | 25286936 | 2R | 23378866..23379282 | 17..433 | 2085 | 100 | Plus |
| 2R | 25286936 | 2R | 23380146..23380276 | 1182..1312 | 655 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 11:07:06 has no hits.
BO15833.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:52:11 Download gff for
BO15833.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-d-RA | 1..1299 | 17..1313 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:07:51 Download gff for
BO15833.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-d-RA | 332..1629 | 14..1312 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:44:52 Download gff for
BO15833.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-d-RA | 294..1589 | 17..1314 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:52:11 Download gff for
BO15833.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-d-RA | 332..1629 | 14..1312 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:39:10 Download gff for
BO15833.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yellow-d-RA | 294..1589 | 17..1314 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:39:10 Download gff for
BO15833.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23378866..23379282 | 17..433 | 100 | -> | Plus |
| 2R | 23379337..23380086 | 434..1183 | 100 | -> | Plus |
| 2R | 23380148..23380276 | 1184..1314 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:44:52 Download gff for
BO15833.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19266389..19266805 | 17..433 | 100 | -> | Plus |
| arm_2R | 19266860..19267609 | 434..1183 | 100 | -> | Plus |
| arm_2R | 19267671..19267799 | 1184..1314 | 98 | | Plus |
BO15833.pep Sequence
Translation from 16 to 1330
> BO15833.pep
MVMMPLRILLIAFSLTLAQSYGVGVNGPRPVRTVETLTQWGQLEFGFPTA
QDRENAQAAGNLVPENGTPIDVQPQYMANGQIRLFTTIPRFVTGIPYTLA
TVSATQGRNGPLLQPYPNYSWHNANGEDCDRITSAFRVAITECNQMWVID
SGVIGTTQLCPPQLLQFALATDRLLHRFRFPNDTYIPSGSLFITPNVLVQ
DPPPRGTCSRTMIYVADVSYHGLVVYDHQAQTSWRAENRFMYPDPDYGKH
TIAGESFYLMDGMFALNNDKRNLYFHPLASASEYSVPLSALNRQQNWANG
PEALPEEFRLLGRRRSECAASAIDGRNNVYCVTFNPVKLFVWNVNSPYNS
RNFGNLPAKSDDLQFVSGMKVLRNREGQEELWMLSNRYQKIAAGTLNSKE
VNFRILRRKLDDVQGGVFFSNDEDLTNRLVFSASFLDH
BO15833.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:01:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yellow-d-PA | 432 | CG9889-PA | 1..432 | 1..432 | 2298 | 100 | Plus |
| yellow-e2-PB | 435 | CG17044-PB | 1..431 | 1..416 | 871 | 40.3 | Plus |
| yellow-d2-PA | 412 | CG9891-PA | 31..408 | 43..416 | 769 | 41.4 | Plus |
| yellow-e3-PA | 409 | CG17045-PA | 19..391 | 31..413 | 555 | 35.8 | Plus |
| yellow-h-PA | 463 | CG1629-PA | 53..434 | 34..413 | 485 | 29.4 | Plus |
