BO15837.complete Sequence
1129 bp (1129 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633601
> BO15837.complete
GAAGTTATCAGTCGACATGGCCTTAATTATGAAATACATCGACAGCATAA
GCAGATACATGGACTCACATAGTGACTCGAGGACAAAGGGCTGGCCCATG
ATGTCGTCCCCATTCCCCACACTGGCCGTTTGCCTCACATATGTCTATCT
GGTCAAGGTGCTGGGACCCCGATTAATGGAGAACCGAAAGCCTCTGAATC
TGCAAAACACTCTAGTCATGTACAATGCCATACAGGTTGTATTTAGCGCA
TGGCTGTTTTATGAGATAGGCATTTCCGGTTGGCTAACTGGACATTATAG
CTTCCGATGTCAGCCAGTCGACTATAGTAATAATCCTAGAACGTTAAGGA
TGGTTCATGCCTGCTGGTGGTACTACTTCTCGAAGTTTACAGAATTCATG
GATACGATTTTCTTCGTGTTGCGCAAGAAGTCGAGCCAAGTTACCACACT
GCACGTCATCCATCACGGCTGCATGCCCATGTCGGTCTGGTTCGGCGTCA
AGTTCACACCGGGTGGTCACAGCACCTTCTTCGGCCTGCTCAACACCTTC
GTCCACATCGTGATGTACACCTACTACATGTTCTCCGCCATGGGTCCGCA
GTACCAGAAATACCTCTGGTGGAAGAAGTACCTGACCACTCTGCAGATGG
TCCAGTTCATCTTGATCATGGTGCACGCCTTCCAGCTGCTCTTCATCGAT
TGCAACTACCCGAAGGCGTTCGTCTGGTGGATTGGCATGCATGCCGTCAT
GTTCTTCTTCCTGTTCAACGAGTTCTACAAGGCAGCCTACAGGAGCCGCA
TGATGAAAAAGAACGGAGCCCTGGCCAACGGACACGCCAAGCCCAATGGC
TACTGCAAGAGCATCAACGCCCATGACGATCTGGCCATGCCACAGACCAC
GGAGGCGACAGCGACAGCGACGCCCGCATCCAAGGCCAACGGGAGCAGCA
CCCCGCCGAGCAATGGACATGCCAATGGGGTGGAGAACGTCTACAAGCAG
GTGGCCAACGGCAGCGCGCACAAGGGGTCCAACGGAGGACTGAGCAACGG
GTATGCCACCAAGCTGCTGGACGACGCCTCCCAGGAGCTGAAACAGCGGA
AGACGCCGAAAGCAAGCTTTCTAGACCAT
BO15837.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:27:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31522-RF | 1098 | CG31522-PF | 1..1095 | 17..1111 | 5475 | 100 | Plus |
| CG31522-RB | 1098 | CG31522-PB | 1..1095 | 17..1111 | 5475 | 100 | Plus |
| CG31522-RD | 1098 | CG31522-PD | 1..1095 | 17..1111 | 5475 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:27:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31522-RF | 2883 | CG31522-RF | 454..1548 | 17..1111 | 5475 | 100 | Plus |
| CG31522-RB | 2216 | CG31522-RB | 322..1416 | 17..1111 | 5475 | 100 | Plus |
| CG31522-RD | 2760 | CG31522-RD | 331..1425 | 17..1111 | 5475 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:27:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4442750..4443056 | 1111..805 | 1535 | 100 | Minus |
| 3R | 32079331 | 3R | 4443902..4444058 | 805..649 | 785 | 100 | Minus |
| 3R | 32079331 | 3R | 4444110..4444249 | 651..512 | 700 | 100 | Minus |
| 3R | 32079331 | 3R | 7982801..7983135 | 695..361 | 625 | 79.1 | Minus |
| 3R | 32079331 | 3R | 4446412..4446534 | 278..156 | 570 | 97.6 | Minus |
| 3R | 32079331 | 3R | 4444319..4444428 | 515..406 | 550 | 100 | Minus |
| 3R | 32079331 | 3R | 4446737..4446823 | 160..74 | 435 | 100 | Minus |
| 3R | 32079331 | 3R | 4445332..4445417 | 349..264 | 430 | 100 | Minus |
| 3R | 32079331 | 3R | 4467642..4467766 | 639..515 | 325 | 84 | Minus |
| 3R | 32079331 | 3R | 4444506..4444563 | 406..349 | 290 | 100 | Minus |
| 3R | 32079331 | 3R | 4447701..4447758 | 74..17 | 290 | 100 | Minus |
| 3R | 32079331 | 3R | 22555685..22555806 | 550..671 | 235 | 79.5 | Plus |
| 3R | 32079331 | 3R | 22559608..22559737 | 651..522 | 230 | 78.5 | Minus |
| 3R | 32079331 | 3R | 22532970..22533076 | 648..542 | 205 | 79.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:27:25 has no hits.
BO15837.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:52:13 Download gff for
BO15837.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31522-RB | 1..1098 | 17..1115 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:07:52 Download gff for
BO15837.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31522-RB | 313..1417 | 9..1115 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:52:30 Download gff for
BO15837.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31522-RD | 331..1425 | 17..1113 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:52:13 Download gff for
BO15837.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31522-RB | 313..1417 | 9..1115 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:20:45 Download gff for
BO15837.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31522-RD | 331..1425 | 17..1113 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:20:45 Download gff for
BO15837.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4442748..4443055 | 806..1113 | 99 | <- | Minus |
| 3R | 4443902..4444057 | 650..805 | 100 | <- | Minus |
| 3R | 4444112..4444248 | 513..649 | 100 | <- | Minus |
| 3R | 4444322..4444427 | 407..512 | 100 | <- | Minus |
| 3R | 4444506..4444562 | 350..406 | 100 | <- | Minus |
| 3R | 4445332..4445415 | 266..349 | 100 | <- | Minus |
| 3R | 4446425..4446532 | 158..265 | 100 | <- | Minus |
| 3R | 4446740..4446822 | 75..157 | 100 | <- | Minus |
| 3R | 4447701..4447758 | 17..74 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:52:30 Download gff for
BO15837.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 268470..268777 | 806..1113 | 99 | <- | Minus |
| arm_3R | 269624..269779 | 650..805 | 100 | <- | Minus |
| arm_3R | 269834..269970 | 513..649 | 100 | <- | Minus |
| arm_3R | 270044..270149 | 407..512 | 100 | <- | Minus |
| arm_3R | 270228..270284 | 350..406 | 100 | <- | Minus |
| arm_3R | 271054..271137 | 266..349 | 100 | <- | Minus |
| arm_3R | 272147..272254 | 158..265 | 100 | <- | Minus |
| arm_3R | 272462..272544 | 75..157 | 100 | <- | Minus |
| arm_3R | 273423..273480 | 17..74 | 100 | | Minus |
BO15837.pep Sequence
Translation from 16 to 1129
> BO15837.pep
MALIMKYIDSISRYMDSHSDSRTKGWPMMSSPFPTLAVCLTYVYLVKVLG
PRLMENRKPLNLQNTLVMYNAIQVVFSAWLFYEIGISGWLTGHYSFRCQP
VDYSNNPRTLRMVHACWWYYFSKFTEFMDTIFFVLRKKSSQVTTLHVIHH
GCMPMSVWFGVKFTPGGHSTFFGLLNTFVHIVMYTYYMFSAMGPQYQKYL
WWKKYLTTLQMVQFILIMVHAFQLLFIDCNYPKAFVWWIGMHAVMFFFLF
NEFYKAAYRSRMMKKNGALANGHAKPNGYCKSINAHDDLAMPQTTEATAT
ATPASKANGSSTPPSNGHANGVENVYKQVANGSAHKGSNGGLSNGYATKL
LDDASQELKQRKTPKASFLDH
BO15837.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:01:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31522-PF | 365 | CG31522-PF | 1..365 | 1..365 | 1987 | 100 | Plus |
| CG31522-PB | 365 | CG31522-PB | 1..365 | 1..365 | 1987 | 100 | Plus |
| CG31522-PD | 365 | CG31522-PD | 1..365 | 1..365 | 1987 | 100 | Plus |
| CG31522-PI | 392 | CG31522-PI | 1..392 | 1..365 | 1949 | 93.1 | Plus |
| CG31522-PH | 364 | CG31522-PH | 1..364 | 1..365 | 1904 | 96.4 | Plus |
