BO15846.complete Sequence
1186 bp (1186 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633604
> BO15846.complete
GAAGTTATCAGTCGACATGGTTATTGTGCACGAGCGGGTTCCGGATATGA
AGCGCTATCCGCCGCTGCCGGACATCTTCCTGGACAACGTGCCGCATATT
CCGTGGGCCTTTAATATGTGCGAAATAACCGGCTCACTATTGTTCACCAT
TTGGGTGGTCGTGCTAACCTTCCACAAGTATAGATTGGTCCTACTGAGGC
GATTCTTTGCTCTGGCGGGCACGGTTTTCCTGCTGCGCTGCGTCACCATG
TTGATCACGTCGCTGAGCGTACCGGGAACGCATCTGCAGTGCAGCCAGAA
GGACTTTGCCATCGATGATCCCAATGTGGACATGGTGGGCGCCTTGATTA
TCCGCATGTCACGAGCCTATCGCATCTGGAGCGGCCTGGGCATGTCCATT
CAGGGAGTGCGGACCTGCGGCGATTATATGTTTAGTGGTCACACGGTGGC
CTTGACCCTGCTCAACTTCTTTATCACAGAATACACGCCGCGGAATCTGT
ACTTCCTGCACACGCTGACCTGGCTGCTCAACATGTTTGGCATATTCTTC
ATCCTGGCTGCCCACGAGCACTACTCCATCGATGTGTTTGTGGCCTTCTA
TATCACCTCACGTCTGTTTCTGTACTATCATACTCTAGCAAATAACAGGG
CTCTCATGCAAAGCGACTCCAAGAGGACGCGTGTTTGGTTTCCCATGTTT
AGCTACTTCGAGAGCAGTGTCGATGGAATGGTGCCCAATGAATACGATAC
ACTTGGCTCCCTCATCGATGGGATTATTGAGCAGATCTTCAAGGCCAAGG
ATCAATTGGCCATATCCGTGAAGCGCTGCTGGCTGGATGCCCCGCTGTCC
GGCAATTCATCGGCTCACATGTTTGGCGGAGAATCTGAACAATGTTTGCG
CAATGGCACAGCATCGGCCGCTTTCTTTAGTCCTCACCAGTCGCTGATCG
GAGGATTGGGTGGTCAGAGGAGCCAGACGCATTTGAATAGCGCCCAATCC
GGGTCCTCCACACCCACACCAGCTACATCGGCGCCGACCAAGAGTTTGCC
GACCCAAAAGAAGACCTTCAGGGATGCGAGTGTGGATCCCTTTTCGCGCA
CGACGTTCGCTGCGGTCCAGCAGGCAGAAAACGTCAAGGATTCGCCGATG
AAGGAAAAGAAGCATCTCGCAAGCTTTCTAGACCAT
BO15846.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:05:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SMSr-RA | 1803 | CG32380-PA | 649..1800 | 17..1168 | 5760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:05:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SMSr-RA | 2591 | CG32380-RA | 893..2044 | 17..1168 | 5760 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:05:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7374597..7375116 | 1168..649 | 2600 | 100 | Minus |
| 3L | 28110227 | 3L | 7375405..7375870 | 482..17 | 2330 | 100 | Minus |
| 3L | 28110227 | 3L | 7375179..7375346 | 650..483 | 840 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:05:31 has no hits.
BO15846.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:52:02 Download gff for
BO15846.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SMSr-RB | 1..1155 | 17..1171 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:07:42 Download gff for
BO15846.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SMSr-RB | 161..1329 | 7..1175 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:17:34 Download gff for
BO15846.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SMSr-RA | 893..2044 | 17..1170 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:52:03 Download gff for
BO15846.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SMSr-RB | 161..1329 | 7..1175 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:07 Download gff for
BO15846.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SMSr-RA | 893..2044 | 17..1170 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:07 Download gff for
BO15846.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7374594..7375115 | 650..1170 | 99 | <- | Minus |
| 3L | 7375180..7375346 | 483..649 | 100 | <- | Minus |
| 3L | 7375405..7375870 | 17..482 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:17:34 Download gff for
BO15846.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7367694..7368215 | 650..1170 | 99 | <- | Minus |
| arm_3L | 7368280..7368446 | 483..649 | 100 | <- | Minus |
| arm_3L | 7368505..7368970 | 17..482 | 100 | | Minus |
BO15846.pep Sequence
Translation from 16 to 1186
> BO15846.pep
MVIVHERVPDMKRYPPLPDIFLDNVPHIPWAFNMCEITGSLLFTIWVVVL
TFHKYRLVLLRRFFALAGTVFLLRCVTMLITSLSVPGTHLQCSQKDFAID
DPNVDMVGALIIRMSRAYRIWSGLGMSIQGVRTCGDYMFSGHTVALTLLN
FFITEYTPRNLYFLHTLTWLLNMFGIFFILAAHEHYSIDVFVAFYITSRL
FLYYHTLANNRALMQSDSKRTRVWFPMFSYFESSVDGMVPNEYDTLGSLI
DGIIEQIFKAKDQLAISVKRCWLDAPLSGNSSAHMFGGESEQCLRNGTAS
AAFFSPHQSLIGGLGGQRSQTHLNSAQSGSSTPTPATSAPTKSLPTQKKT
FRDASVDPFSRTTFAAVQQAENVKDSPMKEKKHLASFLDH
BO15846.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:18:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SMSr-PA | 600 | CG32380-PA | 217..600 | 1..384 | 2016 | 100 | Plus |
