Clone Sequence Records
BO15847.3prime Sequence
308 bp (308 high quality bases) assembled on 2006-06-02
> BO15847.3prime
ATGGTCTAGAAAGCTTGCACTAGACATCTTCTTCATCAGCTCCTCGTCCT
GCATGGACATGGCCGTCAGCTTCTTGCCGATCTTCTCGTGAATGTCCAGA
TATTTGGCCACACAGCGATCGATGCACACCATCTCGCCTTTGCCCAACTC
CGACTCGGAGTAGCGCGGCGGAATGCACTTTTTGTGGCAAGCGTTCGTCA
TGCGGTTATATAAATCGGACATCATTTCGATCTCCATTTCCTGCATCAGC
TGCAGCTTGGCCTGGTCTGCGGTGCTGATCTGGGGCAATGCCATGTCGAC
TGATAACT
BO15847.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:41:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9878-PB | 279 | Tim10-RB | 1..276 | 294..19 | 1380 | 100 | Minus |
CG9878-PA | 279 | Tim10-RA | 1..276 | 294..19 | 1380 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:15:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tim10-RA | 691 | CG9878-RA | 281..556 | 294..19 | 1380 | 100 | Minus |
Tim10-RB | 762 | CG9878-RB | 352..627 | 294..19 | 1380 | 100 | Minus |
CG42497-RA | 691 | CG42497-RA | 281..556 | 294..19 | 1380 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:15:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21690637..21690788 | 143..294 | 760 | 100 | Plus |
2R | 25286936 | 2R | 21690350..21690475 | 19..144 | 630 | 100 | Plus |
Blast to na_te.dros performed 2015-02-03 07:15:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy4 | 6852 | gypsy4 GYPSY4 6852bp | 6386..6442 | 212..267 | 138 | 73.7 | Plus |
BO15847.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:54:57 Download gff for
BO15847.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tim10-PB | 1..279 | 15..294 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:00:07 Download gff for
BO15847.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9878-PA | 1..279 | 15..294 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:36:59 Download gff for
BO15847.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42497-RA | 275..562 | 12..302 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:43:08 Download gff for
BO15847.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42497-RA | 275..562 | 12..302 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:43:08 Download gff for
BO15847.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21690344..21690474 | 12..143 | 97 | <- | Plus |
2R | 21690638..21690792 | 144..302 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:36:59 Download gff for
BO15847.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17577849..17577979 | 12..143 | 97 | <- | Plus |
arm_2R | 17578143..17578297 | 144..302 | 97 | | Plus |
BO15847.5prime Sequence
308 bp (308 high quality bases) assembled on 2006-05-30
> BO15847.5prime
GAAGTTATCAGTCGACATGGCATTGCCCCAGATCAGCACCGCAGACCAGG
CCAAGCTGCAGCTGATGCAGGAAATGGAGATCGAAATGATGTCCGATTTA
TATAACCGCATGACGAACGCTTGCCACAAAAAGTGCATTCCGCCGCGCTA
CTCCGAGTCGGAGTTGGGCAAAGGCGAGATGGTGTGCATCGATCGCTGTG
TGGCCAAATATCTGGACATTCACGAGAAGATCGGCAAGAAGCTGACGGCC
ATGTCCATGCAGGACGAGGAGCTGATGAAGAAGATGTCTAGTGCAAGCTT
TCTAGACC
BO15847.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:41:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9878-PB | 279 | Tim10-RB | 1..276 | 17..292 | 1380 | 100 | Plus |
CG9878-PA | 279 | Tim10-RA | 1..276 | 17..292 | 1380 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:35:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tim10-RA | 691 | CG9878-RA | 281..556 | 17..292 | 1380 | 100 | Plus |
Tim10-RB | 762 | CG9878-RB | 352..627 | 17..292 | 1380 | 100 | Plus |
CG42497-RA | 691 | CG42497-RA | 281..556 | 17..292 | 1380 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:35:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21690637..21690788 | 168..17 | 760 | 100 | Minus |
2R | 25286936 | 2R | 21690350..21690475 | 292..167 | 630 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 23:35:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy4 | 6852 | gypsy4 GYPSY4 6852bp | 6386..6442 | 99..44 | 138 | 73.7 | Minus |
BO15847.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:54:58 Download gff for
BO15847.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tim10-PB | 1..279 | 17..296 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:00:08 Download gff for
BO15847.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9878-PA | 1..279 | 17..296 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 16:54:03 Download gff for
BO15847.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42497-RA | 275..562 | 9..299 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:30:09 Download gff for
BO15847.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42497-RA | 275..562 | 9..299 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:30:09 Download gff for
BO15847.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21690344..21690474 | 168..299 | 97 | <- | Minus |
2R | 21690638..21690792 | 9..167 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 16:54:03 Download gff for
BO15847.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17577849..17577979 | 168..299 | 97 | <- | Minus |
arm_2R | 17578143..17578297 | 9..167 | 97 | | Minus |
BO15847.complete Sequence
310 bp (310 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633605
> BO15847.complete
GAAGTTATCAGTCGACATGGCATTGCCCCAGATCAGCACCGCAGACCAGG
CCAAGCTGCAGCTGATGCAGGAAATGGAGATCGAAATGATGTCCGATTTA
TATAACCGCATGACGAACGCTTGCCACAAAAAGTGCATTCCGCCGCGCTA
CTCCGAGTCGGAGTTGGGCAAAGGCGAGATGGTGTGCATCGATCGCTGTG
TGGCCAAATATCTGGACATTCACGAGAAGATCGGCAAGAAGCTGACGGCC
ATGTCCATGCAGGACGAGGAGCTGATGAAGAAGATGTCTAGTGCAAGCTT
TCTAGACCAT
BO15847.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:49:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tim10-RA | 279 | CG9878-PA | 1..276 | 17..292 | 1380 | 100 | Plus |
Tim10-RB | 279 | CG9878-PB | 1..276 | 17..292 | 1380 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:49:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tim10-RA | 691 | CG9878-RA | 281..556 | 17..292 | 1380 | 100 | Plus |
Tim10-RB | 762 | CG9878-RB | 352..627 | 17..292 | 1380 | 100 | Plus |
CG42497-RA | 691 | CG42497-RA | 281..556 | 17..292 | 1380 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:49:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21690637..21690788 | 168..17 | 760 | 100 | Minus |
2R | 25286936 | 2R | 21690350..21690475 | 292..167 | 630 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 14:49:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy4 | 6852 | gypsy4 GYPSY4 6852bp | 6386..6442 | 99..44 | 138 | 73.7 | Minus |
BO15847.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:59:45 Download gff for
BO15847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tim10-RA | 1..279 | 17..296 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:31:48 Download gff for
BO15847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tim10-RB | 271..558 | 9..299 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:43:26 Download gff for
BO15847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42497-RA | 281..556 | 17..294 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:59:45 Download gff for
BO15847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tim10-RB | 271..558 | 9..299 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:00:54 Download gff for
BO15847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42497-RA | 281..556 | 17..294 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:00:54 Download gff for
BO15847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21690348..21690474 | 168..294 | 98 | <- | Minus |
2R | 21690638..21690788 | 17..167 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:43:26 Download gff for
BO15847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17577853..17577979 | 168..294 | 98 | <- | Minus |
arm_2R | 17578143..17578293 | 17..167 | 100 | | Minus |
BO15847.pep Sequence
Translation from 16 to 310
> BO15847.pep
MALPQISTADQAKLQLMQEMEIEMMSDLYNRMTNACHKKCIPPRYSESEL
GKGEMVCIDRCVAKYLDIHEKIGKKLTAMSMQDEELMKKMSSASFLDH
BO15847.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:48:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tim10-PA | 92 | CG9878-PA | 1..92 | 1..92 | 475 | 100 | Plus |
Tim10-PB | 92 | CG9878-PB | 1..92 | 1..92 | 475 | 100 | Plus |