Clone Sequence Records
BO15849.3prime Sequence
281 bp (281 high quality bases) assembled on 2006-06-02
> BO15849.3prime
ATGGTCTAGAAAGCTTGCGTTGCGCCTCTCGCCCGCTCGTGCCGCCTGCC
GCTGCTGCTGTTGCTGCTGCTCCTTGTCGCGCAGCTCCTTGATGGCGCCC
ACCGTACCGAACATCACCTTGGCCGTCAGCTGGGCGCGGGGCGGACCGCC
GGACTTGCCGCTGGTGGCCGCCTCGCGGTCCAGAGATGCATTCGCATTGG
CGTAGGCGTTGGTGTACGAGACGTAGTTGTTGTTGAGGTCGCGACCGCAG
CTGCACTGATGCGACATGTCGACTGATAACT
BO15849.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:41:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13631-PA | 252 | CG13631-RA | 1..249 | 267..19 | 1245 | 100 | Minus |
CG31247-PD | 4542 | tinc-RD | 3188..3215 | 71..44 | 140 | 100 | Minus |
CG31247-PA | 4542 | tinc-RA | 3188..3215 | 71..44 | 140 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 10:23:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13631-RB | 1583 | CG13631-RB | 170..420 | 269..19 | 1255 | 100 | Minus |
CG13631-RA | 761 | CG13631-RA | 170..420 | 269..19 | 1255 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 10:23:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24769520..24769770 | 269..19 | 1255 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 10:23:04 has no hits.
BO15849.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:55:01 Download gff for
BO15849.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13631-PA | 1..252 | 16..267 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:00:12 Download gff for
BO15849.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13631-PA | 1..252 | 16..267 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 11:25:12 Download gff for
BO15849.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13631-RA | 160..420 | 19..277 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 12:36:25 Download gff for
BO15849.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13631-RA | 160..420 | 19..277 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 12:36:25 Download gff for
BO15849.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24769510..24769770 | 19..277 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 11:25:12 Download gff for
BO15849.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20595232..20595492 | 19..277 | 98 | | Minus |
BO15849.5prime Sequence
281 bp (281 high quality bases) assembled on 2006-05-30
> BO15849.5prime
GAAGTTATCAGTCGACATGTCGCATCAGTGCAGCTGCGGTCGCGACCTCA
ACAACAACTACGTCTCGTACACCAACGCCTACGCCAATGCGAATGCATCT
CTGGACCGCGAGGCGGCCACCAGCGGCAAGTCCGGCGGTCCGCCCCGCGC
CCAGCTGACGGCCAAGGTGATGTTCGGTACGGTGGGCGCCATCAAGGAGC
TGCGCGACAAGGAGCAGCAGCAACAGCAGCAGCGGCAGGCGGCACGAGCG
GGCGAGAGGCGCAACGCAAGCTTTCTAGACC
BO15849.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:41:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13631-PA | 252 | CG13631-RA | 1..249 | 17..265 | 1245 | 100 | Plus |
CG31247-PD | 4542 | tinc-RD | 3188..3215 | 213..240 | 140 | 100 | Plus |
CG31247-PA | 4542 | tinc-RA | 3188..3215 | 213..240 | 140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:09:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13631-RB | 1583 | CG13631-RB | 170..420 | 15..265 | 1255 | 100 | Plus |
CG13631-RA | 761 | CG13631-RA | 170..420 | 15..265 | 1255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:09:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24769520..24769770 | 15..265 | 1255 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 09:09:06 has no hits.
BO15849.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:55:02 Download gff for
BO15849.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13631-PA | 1..252 | 17..268 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:00:14 Download gff for
BO15849.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13631-PA | 1..252 | 17..268 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:27:54 Download gff for
BO15849.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13631-RA | 160..420 | 7..265 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:58:01 Download gff for
BO15849.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13631-RA | 160..420 | 7..265 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 12:58:01 Download gff for
BO15849.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24769510..24769770 | 7..265 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:27:54 Download gff for
BO15849.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20595232..20595492 | 7..265 | 98 | | Plus |
BO15849.complete Sequence
283 bp (283 high quality bases) assembled on 2006-08-25
GenBank Submission: FJ633606
> BO15849.complete
GAAGTTATCAGTCGACATGTCGCATCAGTGCAGCTGCGGTCGCGACCTCA
ACAACAACTACGTCTCGTACACCAACGCCTACGCCAATGCGAATGCATCT
CTGGACCGCGAGGCGGCCACCAGCGGCAAGTCCGGCGGTCCGCCCCGCGC
CCAGCTGACGGCCAAGGTGATGTTCGGTACGGTGGGCGCCATCAAGGAGC
TGCGCGACAAGGAGCAGCAGCAACAGCAGCAGCGGCAGGCGGCACGAGCG
GGCGAGAGGCGCAACGCAAGCTTTCTAGACCAT
BO15849.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:09:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13631-RB | 252 | CG13631-PB | 1..249 | 17..265 | 1245 | 100 | Plus |
CG13631-RA | 252 | CG13631-PA | 1..249 | 17..265 | 1245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:09:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13631-RB | 1583 | CG13631-RB | 170..420 | 15..265 | 1255 | 100 | Plus |
CG13631-RA | 761 | CG13631-RA | 170..420 | 15..265 | 1255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:09:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24769520..24769770 | 15..265 | 1255 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:09:47 has no hits.
BO15849.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 22:59:39 has no hits.
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:06:50 Download gff for
BO15849.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13631-RA | 158..418 | 7..265 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:07:27 Download gff for
BO15849.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13631-RA | 172..420 | 17..267 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-21 22:59:39 has no hits.
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:09 Download gff for
BO15849.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13631-RA | 172..420 | 17..267 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:09 Download gff for
BO15849.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24769522..24769770 | 17..267 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:07:27 Download gff for
BO15849.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20595244..20595492 | 17..267 | 99 | | Plus |
BO15849.pep Sequence
Translation from 16 to 283
> BO15849.pep
MSHQCSCGRDLNNNYVSYTNAYANANASLDREAATSGKSGGPPRAQLTAK
VMFGTVGAIKELRDKEQQQQQQRQAARAGERRNASFLDH
BO15849.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:27:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13631-PB | 83 | CG13631-PB | 1..83 | 1..83 | 428 | 100 | Plus |
CG13631-PA | 83 | CG13631-PA | 1..83 | 1..83 | 428 | 100 | Plus |