Clone BO15850 Report

Search the DGRC for BO15850

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:158
Well:50
Vector:pDNR-Dual
Associated Gene/TranscriptCG8012-RA
Protein status:BO15850.pep:
Sequenced Size:280

Clone Sequence Records

BO15850.5prime Sequence

278 bp (278 high quality bases) assembled on 2006-05-30

> BO15850.5prime
GAAGTTATCAGTCGACATGGGAGTCATGTTGGTCAAGGTCTTGATGTTCG
CATTGTGGCTCGTGGCCCTGAGCCAGGCGAAGCCCCAGCTGTTGGTCACG
ACGCCAGTGAGTTATGCCACCGGAGCGGGTGCCTCTTGGCTGGCTCCCTC
CTCCGCCGCTTACTATCCGGCGTATGCCAGCTATCCGGCCTACGCGGCGT
ATGCGTATGCACCGGTTTATGGCGCATACGCCACGTATCCATACTACTCG
TATCTAGGGCGGGCAAGCTTTCTAGACC

BO15850.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:41:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG8012-PA 249 CG8012-RA 1..246 17..262 1230 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:03:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG8012-RB 851 CG8012-RB 223..468 17..262 1230 100 Plus
CG8012-RA 461 CG8012-RA 72..317 17..262 1230 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:03:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8215599..8215815 46..262 1085 100 Plus
Blast to na_te.dros performed on 2015-02-12 00:03:35 has no hits.

BO15850.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:55:04 Download gff for BO15850.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8012-PA 1..249 17..265 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:00:16 Download gff for BO15850.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8012-PA 1..249 17..265 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:56:53 Download gff for BO15850.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8012-RA 63..321 3..266 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:55:35 Download gff for BO15850.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8012-RA 63..321 3..266 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:55:35 Download gff for BO15850.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8215600..8215819 47..266 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:56:53 Download gff for BO15850.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8208700..8208919 47..266 99   Plus

BO15850.3prime Sequence

278 bp (278 high quality bases) assembled on 2006-06-02

> BO15850.3prime
ATGGTCTAGAAAGCTTGCCCGCCCTAGATACGAGTAGTATGGATACGTGG
CGTATGCGCCATAAACCGGTGCATACGCATACGCCGCGTAGGCCGGATAG
CTGGCATACGCCGGATAGTAAGCGGCGGAGGAGGGAGCCAGCCAAGAGGC
ACCCGCTCCGGTGGCATAACTCACTGGCGTCGTGACCAACAGCTGGGGCT
TCGCCTGGCTCAGGGCCACGAGCCACAATGCGAACATCAAGACCTTGACC
AACATGACTCCCATGTCGACTGATAACT

BO15850.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:41:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG8012-PA 249 CG8012-RA 1..246 264..19 1230 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:27:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG8012-RB 851 CG8012-RB 223..468 264..19 1230 100 Minus
CG8012-RA 461 CG8012-RA 72..317 264..19 1230 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:27:35
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8215599..8215815 235..19 1085 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:27:36 has no hits.

BO15850.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:55:03 Download gff for BO15850.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8012-PA 1..249 16..264 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:00:15 Download gff for BO15850.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8012-PA 1..249 16..264 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:48:36 Download gff for BO15850.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8012-RA 63..321 15..278 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:57:13 Download gff for BO15850.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8012-RA 63..321 15..278 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:57:13 Download gff for BO15850.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8215600..8215819 15..234 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:48:36 Download gff for BO15850.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8208700..8208919 15..234 99   Minus

BO15850.complete Sequence

280 bp (280 high quality bases) assembled on 2006-08-25

GenBank Submission: FJ633607

> BO15850.complete
GAAGTTATCAGTCGACATGGGAGTCATGTTGGTCAAGGTCTTGATGTTCG
CATTGTGGCTCGTGGCCCTGAGCCAGGCGAAGCCCCAGCTGTTGGTCACG
ACGCCAGTGAGTTATGCCACCGGAGCGGGTGCCTCTTGGCTGGCTCCCTC
CTCCGCCGCTTACTATCCGGCGTATGCCAGCTATCCGGCCTACGCGGCGT
ATGCGTATGCACCGGTTTATGGCGCATACGCCACGTATCCATACTACTCG
TATCTAGGGCGGGCAAGCTTTCTAGACCAT

BO15850.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:18:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG8012-RB 249 CG8012-PB 1..246 17..262 1230 100 Plus
CG8012-RA 249 CG8012-PA 1..246 17..262 1230 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:18:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG8012-RB 851 CG8012-RB 223..468 17..262 1230 100 Plus
CG8012-RA 461 CG8012-RA 72..317 17..262 1230 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:18:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8215599..8215815 46..262 1085 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:18:51 has no hits.

BO15850.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:59:42 Download gff for BO15850.complete
Subject Subject Range Query Range Percent Splice Strand
CG8012-RA 1..249 17..265 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:06:52 Download gff for BO15850.complete
Subject Subject Range Query Range Percent Splice Strand
CG8012-RA 63..321 3..266 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:26 Download gff for BO15850.complete
Subject Subject Range Query Range Percent Splice Strand
CG8012-RA 72..317 17..264 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:59:42 Download gff for BO15850.complete
Subject Subject Range Query Range Percent Splice Strand
CG8012-RA 63..321 3..266 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:15:42 Download gff for BO15850.complete
Subject Subject Range Query Range Percent Splice Strand
CG8012-RA 72..317 17..264 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:15:42 Download gff for BO15850.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8215502..8215531 17..46 100 -> Plus
3L 8215600..8215815 47..264 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:26 Download gff for BO15850.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8208602..8208631 17..46 100 -> Plus
arm_3L 8208700..8208915 47..264 99   Plus

BO15850.pep Sequence

Translation from 16 to 280

> BO15850.pep
MGVMLVKVLMFALWLVALSQAKPQLLVTTPVSYATGAGASWLAPSSAAYY
PAYASYPAYAAYAYAPVYGAYATYPYYSYLGRASFLDH

BO15850.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:27:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG8012-PB 82 CG8012-PB 1..82 1..82 429 100 Plus
CG8012-PA 82 CG8012-PA 1..82 1..82 429 100 Plus