Clone Sequence Records
BO15850.5prime Sequence
278 bp (278 high quality bases) assembled on 2006-05-30
> BO15850.5prime
GAAGTTATCAGTCGACATGGGAGTCATGTTGGTCAAGGTCTTGATGTTCG
CATTGTGGCTCGTGGCCCTGAGCCAGGCGAAGCCCCAGCTGTTGGTCACG
ACGCCAGTGAGTTATGCCACCGGAGCGGGTGCCTCTTGGCTGGCTCCCTC
CTCCGCCGCTTACTATCCGGCGTATGCCAGCTATCCGGCCTACGCGGCGT
ATGCGTATGCACCGGTTTATGGCGCATACGCCACGTATCCATACTACTCG
TATCTAGGGCGGGCAAGCTTTCTAGACC
BO15850.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:41:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8012-PA | 249 | CG8012-RA | 1..246 | 17..262 | 1230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:03:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8012-RB | 851 | CG8012-RB | 223..468 | 17..262 | 1230 | 100 | Plus |
CG8012-RA | 461 | CG8012-RA | 72..317 | 17..262 | 1230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:03:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8215599..8215815 | 46..262 | 1085 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:03:35 has no hits.
BO15850.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:55:04 Download gff for
BO15850.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8012-PA | 1..249 | 17..265 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:00:16 Download gff for
BO15850.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8012-PA | 1..249 | 17..265 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:56:53 Download gff for
BO15850.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8012-RA | 63..321 | 3..266 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:55:35 Download gff for
BO15850.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8012-RA | 63..321 | 3..266 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:55:35 Download gff for
BO15850.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8215600..8215819 | 47..266 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:56:53 Download gff for
BO15850.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8208700..8208919 | 47..266 | 99 | | Plus |
BO15850.3prime Sequence
278 bp (278 high quality bases) assembled on 2006-06-02
> BO15850.3prime
ATGGTCTAGAAAGCTTGCCCGCCCTAGATACGAGTAGTATGGATACGTGG
CGTATGCGCCATAAACCGGTGCATACGCATACGCCGCGTAGGCCGGATAG
CTGGCATACGCCGGATAGTAAGCGGCGGAGGAGGGAGCCAGCCAAGAGGC
ACCCGCTCCGGTGGCATAACTCACTGGCGTCGTGACCAACAGCTGGGGCT
TCGCCTGGCTCAGGGCCACGAGCCACAATGCGAACATCAAGACCTTGACC
AACATGACTCCCATGTCGACTGATAACT
BO15850.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:41:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8012-PA | 249 | CG8012-RA | 1..246 | 264..19 | 1230 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:27:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8012-RB | 851 | CG8012-RB | 223..468 | 264..19 | 1230 | 100 | Minus |
CG8012-RA | 461 | CG8012-RA | 72..317 | 264..19 | 1230 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:27:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8215599..8215815 | 235..19 | 1085 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:27:36 has no hits.
BO15850.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:55:03 Download gff for
BO15850.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8012-PA | 1..249 | 16..264 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:00:15 Download gff for
BO15850.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8012-PA | 1..249 | 16..264 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:48:36 Download gff for
BO15850.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8012-RA | 63..321 | 15..278 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:57:13 Download gff for
BO15850.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8012-RA | 63..321 | 15..278 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:57:13 Download gff for
BO15850.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8215600..8215819 | 15..234 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:48:36 Download gff for
BO15850.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8208700..8208919 | 15..234 | 99 | | Minus |
BO15850.complete Sequence
280 bp (280 high quality bases) assembled on 2006-08-25
GenBank Submission: FJ633607
> BO15850.complete
GAAGTTATCAGTCGACATGGGAGTCATGTTGGTCAAGGTCTTGATGTTCG
CATTGTGGCTCGTGGCCCTGAGCCAGGCGAAGCCCCAGCTGTTGGTCACG
ACGCCAGTGAGTTATGCCACCGGAGCGGGTGCCTCTTGGCTGGCTCCCTC
CTCCGCCGCTTACTATCCGGCGTATGCCAGCTATCCGGCCTACGCGGCGT
ATGCGTATGCACCGGTTTATGGCGCATACGCCACGTATCCATACTACTCG
TATCTAGGGCGGGCAAGCTTTCTAGACCAT
BO15850.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:18:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8012-RB | 249 | CG8012-PB | 1..246 | 17..262 | 1230 | 100 | Plus |
CG8012-RA | 249 | CG8012-PA | 1..246 | 17..262 | 1230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:18:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8012-RB | 851 | CG8012-RB | 223..468 | 17..262 | 1230 | 100 | Plus |
CG8012-RA | 461 | CG8012-RA | 72..317 | 17..262 | 1230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:18:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8215599..8215815 | 46..262 | 1085 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:18:51 has no hits.
BO15850.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:59:42 Download gff for
BO15850.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8012-RA | 1..249 | 17..265 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:06:52 Download gff for
BO15850.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8012-RA | 63..321 | 3..266 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:26 Download gff for
BO15850.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8012-RA | 72..317 | 17..264 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:59:42 Download gff for
BO15850.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8012-RA | 63..321 | 3..266 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:15:42 Download gff for
BO15850.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8012-RA | 72..317 | 17..264 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:15:42 Download gff for
BO15850.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8215502..8215531 | 17..46 | 100 | -> | Plus |
3L | 8215600..8215815 | 47..264 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:26 Download gff for
BO15850.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8208602..8208631 | 17..46 | 100 | -> | Plus |
arm_3L | 8208700..8208915 | 47..264 | 99 | | Plus |
BO15850.pep Sequence
Translation from 16 to 280
> BO15850.pep
MGVMLVKVLMFALWLVALSQAKPQLLVTTPVSYATGAGASWLAPSSAAYY
PAYASYPAYAAYAYAPVYGAYATYPYYSYLGRASFLDH
BO15850.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:27:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8012-PB | 82 | CG8012-PB | 1..82 | 1..82 | 429 | 100 | Plus |
CG8012-PA | 82 | CG8012-PA | 1..82 | 1..82 | 429 | 100 | Plus |