Clone BO15855 Report

Search the DGRC for BO15855

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:158
Well:55
Vector:pDNR-Dual
Associated Gene/TranscriptCG32582-RA
Protein status:BO15855.pep:
Sequenced Size:190

Clone Sequence Records

BO15855.5prime Sequence

188 bp (188 high quality bases) assembled on 2006-05-30

> BO15855.5prime
GAAGTTATCAGTCGACATGGGGCAAGGAGCTAGACGAATATTGCGGGCGT
CCCGCTCGCAGATTTGCGGTAGTCTTCGAACGGGCGAAGGGTCCAGCACC
TCAGCAAGTTGTCGAAAAGGTACACATAATCATTTTTGTCCTGCAGGCAC
AAAAATTTGGAAATTCTTTTATGCAAGCTTTCTAGACC

BO15855.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:41:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG32582-PA 159 CG32582-RA 1..156 17..172 780 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:55:55
Subject Length Description Subject Range Query Range Score Percent Strand
Rrp47-RB 1285 CG8928-RB 1132..1189 112..55 230 93.1 Minus
Rrp47-RB 1285 CG8928-RB 1044..1093 160..111 205 94 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:55:46
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15836295..15836450 17..172 780 100 Plus
X 23542271 X 15946096..15946153 112..55 230 93.1 Minus
X 23542271 X 15946008..15946057 160..111 205 94 Minus
Blast to na_te.dros performed on 2015-02-13 00:55:50 has no hits.

BO15855.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:55:08 Download gff for BO15855.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32582-PA 1..159 17..176 98   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:00:23 Download gff for BO15855.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32582-PA 1..159 17..176 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 08:43:21 Download gff for BO15855.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32582-RA 127..288 10..176 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed on 2015-02-13 03:05:13 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:05:13 Download gff for BO15855.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15836292..15836453 10..176 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 08:43:21 Download gff for BO15855.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15730325..15730486 10..176 96   Plus

BO15855.3prime Sequence

188 bp (188 high quality bases) assembled on 2006-06-02

> BO15855.3prime
ATGGTCTAGAAAGCTTGCATAAAAGAATTTCCAAATTTTTGTGCCTGCAG
GACAAAAATGATTATGTGTACCTTTTCGACAACTTGCTGAGGTGCTGGAC
CCTTCGCCCGTTCGAAGACTACCGCAAATCTGCGAGCGGGACGCCCGCAA
TATTCGTCTAGCTCCTTGCCCCATGTCGACTGATAACT

BO15855.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:41:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG32582-PA 159 CG32582-RA 1..156 174..19 780 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:05:53
Subject Length Description Subject Range Query Range Score Percent Strand
Rrp47-RB 1285 CG8928-RB 1132..1189 79..136 230 93.1 Plus
Rrp47-RB 1285 CG8928-RB 1044..1093 31..80 205 94 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:05:47
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15836295..15836450 174..19 780 100 Minus
X 23542271 X 15946096..15946153 79..136 230 93.1 Plus
X 23542271 X 15946008..15946057 31..80 205 94 Plus
Blast to na_te.dros performed on 2015-02-10 15:05:50 has no hits.

BO15855.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:55:07 Download gff for BO15855.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32582-PA 1..159 15..174 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:00:21 Download gff for BO15855.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32582-PA 1..159 15..174 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:33:25 Download gff for BO15855.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32582-RA 127..288 15..181 96   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed on 2015-02-10 17:49:43 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:49:43 Download gff for BO15855.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15836292..15836453 15..181 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:33:25 Download gff for BO15855.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15730325..15730486 15..181 96   Minus

BO15855.complete Sequence

190 bp assembled on 2007-12-19

GenBank Submission: FJ633608

> BO15855.complete
GAAGTTATCAGTCGACATGGGGCAAGGAGCTAGACGAATATTGCGGGCGT
CCCGCTCGCAGATTTGCGGTAGTCTTCGAACGGGCGAAGGGTCCAGCACC
TCAGCAAGTTGTCGAAAAGGTACACATAATCATTTTTGTCCTGCAGGCAC
AAAAATTTGGAAATTCTTTTATGCAAGCTTTCTAGACCAT

BO15855.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed on 2014-11-28 01:11:06 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:11:07
Subject Length Description Subject Range Query Range Score Percent Strand
Rrp47-RB 1285 CG8928-RB 1132..1189 112..55 230 93.1 Minus
Rrp47-RB 1285 CG8928-RB 1044..1093 160..111 205 94 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:11:05
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15836295..15836450 17..172 780 100 Plus
X 23542271 X 15946096..15946153 112..55 230 93.1 Minus
X 23542271 X 15946008..15946057 160..111 205 94 Minus
Blast to na_te.dros performed on 2014-11-28 01:11:05 has no hits.

BO15855.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:59 Download gff for BO15855.complete
Subject Subject Range Query Range Percent Splice Strand
CG32582-RA 1..159 17..176 98   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:30:27 Download gff for BO15855.complete
Subject Subject Range Query Range Percent Splice Strand
CG32582-RA 130..285 17..174 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:41:29 Download gff for BO15855.complete
Subject Subject Range Query Range Percent Splice Strand
CG32582-RA 130..285 17..174 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:03:00 Download gff for BO15855.complete
Subject Subject Range Query Range Percent Splice Strand
CG32582-RA 127..288 10..176 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed on 2014-11-28 01:46:47 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:46:47 Download gff for BO15855.complete
Subject Subject Range Query Range Percent Splice Strand
X 15836295..15836450 17..174 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:41:29 Download gff for BO15855.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15730328..15730483 17..174 98   Plus

BO15855.pep Sequence

Translation from 16 to 190

> BO15855.pep
MGQGARRILRASRSQICGSLRTGEGSSTSASCRKGTHNHFCPAGTKIWKF
FYASFLDH
Sequence BO15855.pep has no blast hits.