Clone Sequence Records
BO15859.5prime Sequence
761 bp (761 high quality bases) assembled on 2006-05-30
> BO15859.5prime
GAAGTTATCAGTCGACATGTCGGAGAAAAAGGGTGCGCTAAAAGTAATCC
CGTCCGCTTCGGAGGAGCAACTTGTCCAGGCCCTGGGCGATCTTCTCCAG
CGCTGCTCCCAGGAGGCGCTGGCCAAACATGATAAGTTCAGCGTGGGACT
TTCGGGTGGTTCCCTCGTCCAGTTGCTAACGAAAGCCCTGAAATCGTGCA
ACTTAAAAACGGCCAAATGGGTGTTTTTCTTCTGTGACGAGCGGTATGTT
CGCCTGGATGACAGCGATTCCACCTATGGTGCCTACAGGGCCGAGTGGCT
AACCCAATTGCCCTGCATCCAGGAATCCCAGTTCGTCCGCGCCGATACCA
GCCAACCGCTGGACGCCTGCGCCGCAGATTACGAGGCGAAGGTCAAAAGT
CAAGTCGATCGCTTCGATCTGCTGCTGCTTGGCATGGGACCCGATGGCCA
CACCTGCTCCCTCTTTCCCGAGCAGCCAGCCACCCTGCAGGAGACCAAGC
GCCTGGTTATCCCCATCCGGAACTCGCCCAAGCCGCCTCCCGAGCGGATC
ACTTTCACCCTGCCGCTGATCAATAAGGCACGGAATGTCGCCTTCGTGGT
TACGGGCGCCGCANAAGCCAGTGTCGTCAAGAGTGTGTTTGTCGATCTGG
ACAAGAAGTTTCCCGCTGCGTGGGTGAATCCGACCAAAGGGCAGTTGACA
TTGATTGTGGACGCGGGTGCTGGAAAAGAAATTGAAACCTTAAAAGCAAG
CTTTCTAGACC
BO15859.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:41:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17333-PA | 732 | CG17333-RA | 1..729 | 17..745 | 3626 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:12:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17333-RA | 847 | CG17333-RA | 63..791 | 17..745 | 3634 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:12:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10847769..10848245 | 155..631 | 2374 | 99.8 | Plus |
X | 23542271 | X | 10847500..10847640 | 17..157 | 705 | 100 | Plus |
X | 23542271 | X | 10848363..10848478 | 630..745 | 580 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 13:12:18 has no hits.
BO15859.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:55:13 Download gff for
BO15859.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17333-PA | 1..732 | 17..748 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:00:29 Download gff for
BO15859.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17333-PA | 1..732 | 17..748 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:08:13 Download gff for
BO15859.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17333-RA | 53..791 | 7..745 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:31:58 Download gff for
BO15859.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17333-RA | 53..791 | 7..745 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:31:58 Download gff for
BO15859.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10847490..10847638 | 7..155 | 97 | -> | Plus |
X | 10847770..10848245 | 156..631 | 99 | -> | Plus |
X | 10848365..10848478 | 632..745 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:08:13 Download gff for
BO15859.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10741523..10741671 | 7..155 | 97 | -> | Plus |
arm_X | 10741803..10742278 | 156..631 | 99 | -> | Plus |
arm_X | 10742398..10742511 | 632..745 | 100 | | Plus |
BO15859.complete Sequence
763 bp (763 high quality bases) assembled on 2006-08-24
GenBank Submission: FJ633609
> BO15859.complete
GAAGTTATCAGTCGACATGTCGGAGAAAAAGGGTGCGCTAAAAGTAATCC
CGTCCGCTTCGGAGGAGCAACTTGTCCAGGCCCTGGGCGATCTTCTCCAG
CGCTGCTCCCAGGAGGCGCTGGCCAAACATGATAAGTTCAGCGTGGGACT
TTCGGGTGGTTCCCTCGTCCAGTTGCTAACGAAAGCCCTGAAATCGTGCA
ACTTAAAAACGGCCAAATGGGTGTTTTTCTTCTGTGACGAGCGGTATGTT
CGCCTGGATGACAGCGATTCCACCTATGGTGCCTACAGGGCCGAGTGGCT
AACCCAATTGCCCTGCATCCAGGAATCCCAGTTCGTCCGCGCCGATACCA
GCCAACCGCTGGACGCCTGCGCCGCAGATTACGAGGCGAAGGTCAAAAGT
CAAGTCGATCGCTTCGATCTGCTGCTGCTTGGCATGGGACCCGATGGCCA
CACCTGCTCCCTCTTTCCCGAGCAGCCAGCCACCCTGCAGGAGACCAAGC
GCCTGGTTATCCCCATCCGGAACTCGCCCAAGCCGCCTCCCGAGCGGATC
ACTTTCACCCTGCCGCTGATCAATAAGGCACGGAATGTCGCCTTCGTGGT
TACGGGCGCCGCAAAAGCCAGTGTCGTCAAGAGTGTGTTTGTCGATCTGG
ACAAGAAGTTTCCCGCTGCGTGGGTGAATCCGACCAAAGGGCAGTTGACA
TTGATTGTGGACGCGGGTGCTGGAAAAGAAATTGAAACCTTAAAAGCAAG
CTTTCTAGACCAT
BO15859.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:45:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17333-RA | 732 | CG17333-PA | 1..729 | 17..745 | 3645 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:45:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17333-RA | 847 | CG17333-RA | 63..791 | 17..745 | 3645 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:45:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 10847769..10848245 | 155..631 | 2385 | 100 | Plus |
X | 23542271 | X | 10847500..10847640 | 17..157 | 705 | 100 | Plus |
X | 23542271 | X | 10848363..10848478 | 630..745 | 580 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:45:25 has no hits.
BO15859.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:02 Download gff for
BO15859.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17333-RA | 1..732 | 17..748 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:12:04 Download gff for
BO15859.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17333-RA | 1..732 | 17..748 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:54 Download gff for
BO15859.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17333-RA | 63..787 | 17..741 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:00:02 Download gff for
BO15859.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17333-RA | 1..732 | 17..748 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:52:06 Download gff for
BO15859.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17333-RA | 63..787 | 17..741 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:52:06 Download gff for
BO15859.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 10847500..10847638 | 17..155 | 100 | -> | Plus |
X | 10847770..10848245 | 156..631 | 100 | -> | Plus |
X | 10848365..10848474 | 632..741 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:54 Download gff for
BO15859.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10741533..10741671 | 17..155 | 100 | -> | Plus |
arm_X | 10741803..10742278 | 156..631 | 100 | -> | Plus |
arm_X | 10742398..10742507 | 632..741 | 100 | | Plus |
BO15859.pep Sequence
Translation from 16 to 763
> BO15859.pep
MSEKKGALKVIPSASEEQLVQALGDLLQRCSQEALAKHDKFSVGLSGGSL
VQLLTKALKSCNLKTAKWVFFFCDERYVRLDDSDSTYGAYRAEWLTQLPC
IQESQFVRADTSQPLDACAADYEAKVKSQVDRFDLLLLGMGPDGHTCSLF
PEQPATLQETKRLVIPIRNSPKPPPERITFTLPLINKARNVAFVVTGAAK
ASVVKSVFVDLDKKFPAAWVNPTKGQLTLIVDAGAGKEIETLKASFLDH
BO15859.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17333-PA | 243 | CG17333-PA | 1..243 | 1..243 | 1246 | 100 | Plus |