Clone BO15859 Report

Search the DGRC for BO15859

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:158
Well:59
Vector:pDNR-Dual
Associated Gene/TranscriptCG17333-RA
Protein status:BO15859.pep: validated full length
Sequenced Size:763

Clone Sequence Records

BO15859.5prime Sequence

761 bp (761 high quality bases) assembled on 2006-05-30

> BO15859.5prime
GAAGTTATCAGTCGACATGTCGGAGAAAAAGGGTGCGCTAAAAGTAATCC
CGTCCGCTTCGGAGGAGCAACTTGTCCAGGCCCTGGGCGATCTTCTCCAG
CGCTGCTCCCAGGAGGCGCTGGCCAAACATGATAAGTTCAGCGTGGGACT
TTCGGGTGGTTCCCTCGTCCAGTTGCTAACGAAAGCCCTGAAATCGTGCA
ACTTAAAAACGGCCAAATGGGTGTTTTTCTTCTGTGACGAGCGGTATGTT
CGCCTGGATGACAGCGATTCCACCTATGGTGCCTACAGGGCCGAGTGGCT
AACCCAATTGCCCTGCATCCAGGAATCCCAGTTCGTCCGCGCCGATACCA
GCCAACCGCTGGACGCCTGCGCCGCAGATTACGAGGCGAAGGTCAAAAGT
CAAGTCGATCGCTTCGATCTGCTGCTGCTTGGCATGGGACCCGATGGCCA
CACCTGCTCCCTCTTTCCCGAGCAGCCAGCCACCCTGCAGGAGACCAAGC
GCCTGGTTATCCCCATCCGGAACTCGCCCAAGCCGCCTCCCGAGCGGATC
ACTTTCACCCTGCCGCTGATCAATAAGGCACGGAATGTCGCCTTCGTGGT
TACGGGCGCCGCANAAGCCAGTGTCGTCAAGAGTGTGTTTGTCGATCTGG
ACAAGAAGTTTCCCGCTGCGTGGGTGAATCCGACCAAAGGGCAGTTGACA
TTGATTGTGGACGCGGGTGCTGGAAAAGAAATTGAAACCTTAAAAGCAAG
CTTTCTAGACC

BO15859.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:41:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG17333-PA 732 CG17333-RA 1..729 17..745 3626 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:12:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG17333-RA 847 CG17333-RA 63..791 17..745 3634 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:12:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10847769..10848245 155..631 2374 99.8 Plus
X 23542271 X 10847500..10847640 17..157 705 100 Plus
X 23542271 X 10848363..10848478 630..745 580 100 Plus
Blast to na_te.dros performed on 2015-02-11 13:12:18 has no hits.

BO15859.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:55:13 Download gff for BO15859.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17333-PA 1..732 17..748 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 07:00:29 Download gff for BO15859.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17333-PA 1..732 17..748 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:08:13 Download gff for BO15859.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17333-RA 53..791 7..745 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:31:58 Download gff for BO15859.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17333-RA 53..791 7..745 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:31:58 Download gff for BO15859.5prime
Subject Subject Range Query Range Percent Splice Strand
X 10847490..10847638 7..155 97 -> Plus
X 10847770..10848245 156..631 99 -> Plus
X 10848365..10848478 632..745 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:08:13 Download gff for BO15859.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 10741523..10741671 7..155 97 -> Plus
arm_X 10741803..10742278 156..631 99 -> Plus
arm_X 10742398..10742511 632..745 100   Plus

BO15859.complete Sequence

763 bp (763 high quality bases) assembled on 2006-08-24

GenBank Submission: FJ633609

> BO15859.complete
GAAGTTATCAGTCGACATGTCGGAGAAAAAGGGTGCGCTAAAAGTAATCC
CGTCCGCTTCGGAGGAGCAACTTGTCCAGGCCCTGGGCGATCTTCTCCAG
CGCTGCTCCCAGGAGGCGCTGGCCAAACATGATAAGTTCAGCGTGGGACT
TTCGGGTGGTTCCCTCGTCCAGTTGCTAACGAAAGCCCTGAAATCGTGCA
ACTTAAAAACGGCCAAATGGGTGTTTTTCTTCTGTGACGAGCGGTATGTT
CGCCTGGATGACAGCGATTCCACCTATGGTGCCTACAGGGCCGAGTGGCT
AACCCAATTGCCCTGCATCCAGGAATCCCAGTTCGTCCGCGCCGATACCA
GCCAACCGCTGGACGCCTGCGCCGCAGATTACGAGGCGAAGGTCAAAAGT
CAAGTCGATCGCTTCGATCTGCTGCTGCTTGGCATGGGACCCGATGGCCA
CACCTGCTCCCTCTTTCCCGAGCAGCCAGCCACCCTGCAGGAGACCAAGC
GCCTGGTTATCCCCATCCGGAACTCGCCCAAGCCGCCTCCCGAGCGGATC
ACTTTCACCCTGCCGCTGATCAATAAGGCACGGAATGTCGCCTTCGTGGT
TACGGGCGCCGCAAAAGCCAGTGTCGTCAAGAGTGTGTTTGTCGATCTGG
ACAAGAAGTTTCCCGCTGCGTGGGTGAATCCGACCAAAGGGCAGTTGACA
TTGATTGTGGACGCGGGTGCTGGAAAAGAAATTGAAACCTTAAAAGCAAG
CTTTCTAGACCAT

BO15859.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:45:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG17333-RA 732 CG17333-PA 1..729 17..745 3645 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:45:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG17333-RA 847 CG17333-RA 63..791 17..745 3645 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:45:24
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 10847769..10848245 155..631 2385 100 Plus
X 23542271 X 10847500..10847640 17..157 705 100 Plus
X 23542271 X 10848363..10848478 630..745 580 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:45:25 has no hits.

BO15859.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:00:02 Download gff for BO15859.complete
Subject Subject Range Query Range Percent Splice Strand
CG17333-RA 1..732 17..748 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:12:04 Download gff for BO15859.complete
Subject Subject Range Query Range Percent Splice Strand
CG17333-RA 1..732 17..748 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:54 Download gff for BO15859.complete
Subject Subject Range Query Range Percent Splice Strand
CG17333-RA 63..787 17..741 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:00:02 Download gff for BO15859.complete
Subject Subject Range Query Range Percent Splice Strand
CG17333-RA 1..732 17..748 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:52:06 Download gff for BO15859.complete
Subject Subject Range Query Range Percent Splice Strand
CG17333-RA 63..787 17..741 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:52:06 Download gff for BO15859.complete
Subject Subject Range Query Range Percent Splice Strand
X 10847500..10847638 17..155 100 -> Plus
X 10847770..10848245 156..631 100 -> Plus
X 10848365..10848474 632..741 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:54 Download gff for BO15859.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 10741533..10741671 17..155 100 -> Plus
arm_X 10741803..10742278 156..631 100 -> Plus
arm_X 10742398..10742507 632..741 100   Plus

BO15859.pep Sequence

Translation from 16 to 763

> BO15859.pep
MSEKKGALKVIPSASEEQLVQALGDLLQRCSQEALAKHDKFSVGLSGGSL
VQLLTKALKSCNLKTAKWVFFFCDERYVRLDDSDSTYGAYRAEWLTQLPC
IQESQFVRADTSQPLDACAADYEAKVKSQVDRFDLLLLGMGPDGHTCSLF
PEQPATLQETKRLVIPIRNSPKPPPERITFTLPLINKARNVAFVVTGAAK
ASVVKSVFVDLDKKFPAAWVNPTKGQLTLIVDAGAGKEIETLKASFLDH

BO15859.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG17333-PA 243 CG17333-PA 1..243 1..243 1246 100 Plus